Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats

Detalhes bibliográficos
Autor(a) principal: Milani, Diogo [UNESP]
Data de Publicação: 2021
Outros Autores: Ruiz-Ruano, Francisco J., Camacho, Juan Pedro M., Cabral-de-Mello, Diogo C. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41437-021-00470-5
http://hdl.handle.net/11449/222382
Resumo: In addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.
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spelling Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeatsIn addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.Departamento de Biologia Geral e Aplicada UNESP - Univ Estadual Paulista Instituto de Biociências/IBEvolutionary Biology Centre Department of Organismal Biology – Systematic Biology Uppsala UniversityNorwich Research Park School of Biological Sciences University of East AngliaDepartamento de Genética Facultad de Ciencias UGR - Univ de GranadaDepartamento de Biologia Geral e Aplicada UNESP - Univ Estadual Paulista Instituto de Biociências/IBUniversidade Estadual Paulista (UNESP)Uppsala UniversityUniversity of East AngliaUGR - Univ de GranadaMilani, Diogo [UNESP]Ruiz-Ruano, Francisco J.Camacho, Juan Pedro M.Cabral-de-Mello, Diogo C. [UNESP]2022-04-28T19:44:19Z2022-04-28T19:44:19Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41437-021-00470-5Heredity.1365-25400018-067Xhttp://hdl.handle.net/11449/22238210.1038/s41437-021-00470-52-s2.0-85114650417Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengHeredityinfo:eu-repo/semantics/openAccess2022-04-28T19:44:19Zoai:repositorio.unesp.br:11449/222382Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462022-04-28T19:44:19Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
title Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
spellingShingle Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
Milani, Diogo [UNESP]
title_short Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
title_full Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
title_fullStr Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
title_full_unstemmed Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
title_sort Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats
author Milani, Diogo [UNESP]
author_facet Milani, Diogo [UNESP]
Ruiz-Ruano, Francisco J.
Camacho, Juan Pedro M.
Cabral-de-Mello, Diogo C. [UNESP]
author_role author
author2 Ruiz-Ruano, Francisco J.
Camacho, Juan Pedro M.
Cabral-de-Mello, Diogo C. [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Uppsala University
University of East Anglia
UGR - Univ de Granada
dc.contributor.author.fl_str_mv Milani, Diogo [UNESP]
Ruiz-Ruano, Francisco J.
Camacho, Juan Pedro M.
Cabral-de-Mello, Diogo C. [UNESP]
description In addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.
publishDate 2021
dc.date.none.fl_str_mv 2021-01-01
2022-04-28T19:44:19Z
2022-04-28T19:44:19Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41437-021-00470-5
Heredity.
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0018-067X
http://hdl.handle.net/11449/222382
10.1038/s41437-021-00470-5
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url http://dx.doi.org/10.1038/s41437-021-00470-5
http://hdl.handle.net/11449/222382
identifier_str_mv Heredity.
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10.1038/s41437-021-00470-5
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dc.language.iso.fl_str_mv eng
language eng
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reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
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