Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

Detalhes bibliográficos
Autor(a) principal: Camargo, Gregório Miguel Ferreira de [UNESP]
Data de Publicação: 2015
Outros Autores: Porto-Neto, Laercio Ribeiro, Kelly, Matthew J., Bunch, Rowan J., McWilliam, Sean M., Tonhati, Humberto [UNESP], Lehnert, Sigrid A., Fortes, Marina R. S., Moore, Stephen S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://www.biomedcentral.com/1471-2164/16/384
http://hdl.handle.net/11449/129211
Resumo: Background: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits.
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spelling Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattleNon-synonymous SNPX chromosomeBos taurus indicusScrotal circumferenceSperm morphologyBackground: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)The University of Queensland, School of Chemistry and Molecular BioscienceThe University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Centre for Animal ScienceUniversidade Estadual Paulista, Departamento de Zootecnia, Faculdade de Ciências Agrárias e Veterinárias de JaboticabalFAPESP: 2013/12851-5Biomed Central LtdUniversidade Estadual Paulista (Unesp)Commonwealth Scientific and Industrial Research Organization (CSIRO)The University of QueenslandCamargo, Gregório Miguel Ferreira de [UNESP]Porto-Neto, Laercio RibeiroKelly, Matthew J.Bunch, Rowan J.McWilliam, Sean M.Tonhati, Humberto [UNESP]Lehnert, Sigrid A.Fortes, Marina R. S.Moore, Stephen S.2015-10-21T20:36:27Z2015-10-21T20:36:27Z2015-05-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-10application/pdfhttp://www.biomedcentral.com/1471-2164/16/384Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015.1471-2164http://hdl.handle.net/11449/12921110.1186/s12864-015-1595-0WOS:000354426600004WOS000354426600004.pdf7445254960858159Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBmc Genomics3.7302,110info:eu-repo/semantics/openAccess2024-06-07T18:41:30Zoai:repositorio.unesp.br:11449/129211Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:47:14.571894Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
title Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
spellingShingle Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
Camargo, Gregório Miguel Ferreira de [UNESP]
Non-synonymous SNP
X chromosome
Bos taurus indicus
Scrotal circumference
Sperm morphology
title_short Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
title_full Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
title_fullStr Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
title_full_unstemmed Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
title_sort Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
author Camargo, Gregório Miguel Ferreira de [UNESP]
author_facet Camargo, Gregório Miguel Ferreira de [UNESP]
Porto-Neto, Laercio Ribeiro
Kelly, Matthew J.
Bunch, Rowan J.
McWilliam, Sean M.
Tonhati, Humberto [UNESP]
Lehnert, Sigrid A.
Fortes, Marina R. S.
Moore, Stephen S.
author_role author
author2 Porto-Neto, Laercio Ribeiro
Kelly, Matthew J.
Bunch, Rowan J.
McWilliam, Sean M.
Tonhati, Humberto [UNESP]
Lehnert, Sigrid A.
Fortes, Marina R. S.
Moore, Stephen S.
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Commonwealth Scientific and Industrial Research Organization (CSIRO)
The University of Queensland
dc.contributor.author.fl_str_mv Camargo, Gregório Miguel Ferreira de [UNESP]
Porto-Neto, Laercio Ribeiro
Kelly, Matthew J.
Bunch, Rowan J.
McWilliam, Sean M.
Tonhati, Humberto [UNESP]
Lehnert, Sigrid A.
Fortes, Marina R. S.
Moore, Stephen S.
dc.subject.por.fl_str_mv Non-synonymous SNP
X chromosome
Bos taurus indicus
Scrotal circumference
Sperm morphology
topic Non-synonymous SNP
X chromosome
Bos taurus indicus
Scrotal circumference
Sperm morphology
description Background: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits.
publishDate 2015
dc.date.none.fl_str_mv 2015-10-21T20:36:27Z
2015-10-21T20:36:27Z
2015-05-15
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://www.biomedcentral.com/1471-2164/16/384
Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015.
1471-2164
http://hdl.handle.net/11449/129211
10.1186/s12864-015-1595-0
WOS:000354426600004
WOS000354426600004.pdf
7445254960858159
url http://www.biomedcentral.com/1471-2164/16/384
http://hdl.handle.net/11449/129211
identifier_str_mv Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015.
1471-2164
10.1186/s12864-015-1595-0
WOS:000354426600004
WOS000354426600004.pdf
7445254960858159
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Bmc Genomics
3.730
2,110
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-10
application/pdf
dc.publisher.none.fl_str_mv Biomed Central Ltd
publisher.none.fl_str_mv Biomed Central Ltd
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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