Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://www.biomedcentral.com/1471-2164/16/384 http://hdl.handle.net/11449/129211 |
Resumo: | Background: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits. |
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spelling |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattleNon-synonymous SNPX chromosomeBos taurus indicusScrotal circumferenceSperm morphologyBackground: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)The University of Queensland, School of Chemistry and Molecular BioscienceThe University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Centre for Animal ScienceUniversidade Estadual Paulista, Departamento de Zootecnia, Faculdade de Ciências Agrárias e Veterinárias de JaboticabalFAPESP: 2013/12851-5Biomed Central LtdUniversidade Estadual Paulista (Unesp)Commonwealth Scientific and Industrial Research Organization (CSIRO)The University of QueenslandCamargo, Gregório Miguel Ferreira de [UNESP]Porto-Neto, Laercio RibeiroKelly, Matthew J.Bunch, Rowan J.McWilliam, Sean M.Tonhati, Humberto [UNESP]Lehnert, Sigrid A.Fortes, Marina R. S.Moore, Stephen S.2015-10-21T20:36:27Z2015-10-21T20:36:27Z2015-05-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-10application/pdfhttp://www.biomedcentral.com/1471-2164/16/384Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015.1471-2164http://hdl.handle.net/11449/12921110.1186/s12864-015-1595-0WOS:000354426600004WOS000354426600004.pdf7445254960858159Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBmc Genomics3.7302,110info:eu-repo/semantics/openAccess2024-06-07T18:41:30Zoai:repositorio.unesp.br:11449/129211Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:47:14.571894Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
title |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
spellingShingle |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle Camargo, Gregório Miguel Ferreira de [UNESP] Non-synonymous SNP X chromosome Bos taurus indicus Scrotal circumference Sperm morphology |
title_short |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
title_full |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
title_fullStr |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
title_full_unstemmed |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
title_sort |
Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle |
author |
Camargo, Gregório Miguel Ferreira de [UNESP] |
author_facet |
Camargo, Gregório Miguel Ferreira de [UNESP] Porto-Neto, Laercio Ribeiro Kelly, Matthew J. Bunch, Rowan J. McWilliam, Sean M. Tonhati, Humberto [UNESP] Lehnert, Sigrid A. Fortes, Marina R. S. Moore, Stephen S. |
author_role |
author |
author2 |
Porto-Neto, Laercio Ribeiro Kelly, Matthew J. Bunch, Rowan J. McWilliam, Sean M. Tonhati, Humberto [UNESP] Lehnert, Sigrid A. Fortes, Marina R. S. Moore, Stephen S. |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Commonwealth Scientific and Industrial Research Organization (CSIRO) The University of Queensland |
dc.contributor.author.fl_str_mv |
Camargo, Gregório Miguel Ferreira de [UNESP] Porto-Neto, Laercio Ribeiro Kelly, Matthew J. Bunch, Rowan J. McWilliam, Sean M. Tonhati, Humberto [UNESP] Lehnert, Sigrid A. Fortes, Marina R. S. Moore, Stephen S. |
dc.subject.por.fl_str_mv |
Non-synonymous SNP X chromosome Bos taurus indicus Scrotal circumference Sperm morphology |
topic |
Non-synonymous SNP X chromosome Bos taurus indicus Scrotal circumference Sperm morphology |
description |
Background: Previous genome-wide association analyses identified QTL regions in the X chromosome for percentage of normal sperm and scrotal circumference in Brahman and Tropical Composite cattle. These traits are important to be studied because they are indicators of male fertility and are correlated with female sexual precocity and reproductive longevity. The aim was to investigate candidate genes in these regions and to identify putative causative mutations that influence these traits. In addition, we tested the identified mutations for female fertility and growth traits.Results: Using a combination of bioinformatics and molecular assay technology, twelve non-synonymous SNPs in eleven genes were genotyped in a cattle population. Three and nine SNPs explained more than 1% of the additive genetic variance for percentage of normal sperm and scrotal circumference, respectively. The SNPs that had a major influence in percentage of normal sperm were mapped to LOC100138021 and TAF7L genes; and in TEX11 and AR genes for scrotal circumference. One SNP in TEX11 was explained similar to 13% of the additive genetic variance for scrotal circumference at 12 months. The tested SNP were also associated with weight measurements, but not with female fertility traits.Conclusions: The strong association of SNPs located in X chromosome genes with male fertility traits validates the QTL. The implicated genes became good candidates to be used for genetic evaluation, without detrimentally influencing female fertility traits. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-10-21T20:36:27Z 2015-10-21T20:36:27Z 2015-05-15 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://www.biomedcentral.com/1471-2164/16/384 Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015. 1471-2164 http://hdl.handle.net/11449/129211 10.1186/s12864-015-1595-0 WOS:000354426600004 WOS000354426600004.pdf 7445254960858159 |
url |
http://www.biomedcentral.com/1471-2164/16/384 http://hdl.handle.net/11449/129211 |
identifier_str_mv |
Bmc Genomics. London: Biomed Central Ltd, v. 16, p. 1-10, 2015. 1471-2164 10.1186/s12864-015-1595-0 WOS:000354426600004 WOS000354426600004.pdf 7445254960858159 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Bmc Genomics 3.730 2,110 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-10 application/pdf |
dc.publisher.none.fl_str_mv |
Biomed Central Ltd |
publisher.none.fl_str_mv |
Biomed Central Ltd |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128858221707264 |