The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets

Detalhes bibliográficos
Autor(a) principal: Lyra, Mariana L. [UNESP]
Data de Publicação: 2017
Outros Autores: Joger, Ulrich, Schulte, Ulrich, Slimani, Tahar, El Mouden, El Hassan, Bouazza, Abdellah, Kuenzel, Sven, Lemmon, Alan R., Lemmon, Emily Moriarty, Vences, Miguel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
DOI: 10.1080/23802359.2017.1339212
Texto Completo: http://dx.doi.org/10.1080/23802359.2017.1339212
http://hdl.handle.net/11449/163754
Resumo: The nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.
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spelling The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasetsSquamataGekkotaSphaerodactylidaeQuedenfeldtia moerensQuedenfeldtia trachyblepharusMoroccoThe nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.Moroccan-German project research project of the Bundesministerium fur Bildung und ForschungHassan II Academy project (ICGVSA)Univ Estadual Paulista, UNESP, Inst Biociencias, Dept Zool, Rio Claro, BrazilStaatliches Nat Hist Museum, Braunschweig, GermanyBuro Faunist Gutachten, Borgholzhausen, GermanyCadi Ayyad Univ, Fac Sci, Biodivers & Ecosyst Dynam Lab, Marrakech, MoroccoMax Planck Inst Evolut Biol, Plon, GermanyFlorida State Univ, Dept Comp Sci, Dirac Sci Lib, Tallahassee, FL 32306 USAFlorida State Univ, Dept Biol Sci, B-157, Tallahassee, FL 32306 USATech Univ Carolo Wilhelmina Braunschweig, Zool Inst, Mendelssohnstr 4, D-38106 Braunschweig, GermanyUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Zool, Rio Claro, BrazilMoroccan-German project research project of the Bundesministerium fur Bildung und Forschung: 12/07Taylor & Francis LtdUniversidade Estadual Paulista (Unesp)Staatliches Nat Hist MuseumBuro Faunist GutachtenCadi Ayyad UnivMax Planck Inst Evolut BiolFlorida State UnivTech Univ Carolo Wilhelmina BraunschweigLyra, Mariana L. [UNESP]Joger, UlrichSchulte, UlrichSlimani, TaharEl Mouden, El HassanBouazza, AbdellahKuenzel, SvenLemmon, Alan R.Lemmon, Emily MoriartyVences, Miguel2018-11-26T17:44:49Z2018-11-26T17:44:49Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article356-358application/pdfhttp://dx.doi.org/10.1080/23802359.2017.1339212Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017.2380-2359http://hdl.handle.net/11449/16375410.1080/23802359.2017.1339212WOS:000423158200015WOS000423158200015.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial Dna Part B-resources0,180info:eu-repo/semantics/openAccess2023-12-28T06:19:37Zoai:repositorio.unesp.br:11449/163754Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:31:40.641796Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
title The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
spellingShingle The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
Lyra, Mariana L. [UNESP]
Squamata
Gekkota
Sphaerodactylidae
Quedenfeldtia moerens
Quedenfeldtia trachyblepharus
Morocco
Lyra, Mariana L. [UNESP]
Squamata
Gekkota
Sphaerodactylidae
Quedenfeldtia moerens
Quedenfeldtia trachyblepharus
Morocco
title_short The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
title_full The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
title_fullStr The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
title_full_unstemmed The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
title_sort The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
author Lyra, Mariana L. [UNESP]
author_facet Lyra, Mariana L. [UNESP]
Lyra, Mariana L. [UNESP]
Joger, Ulrich
Schulte, Ulrich
Slimani, Tahar
El Mouden, El Hassan
Bouazza, Abdellah
Kuenzel, Sven
Lemmon, Alan R.
Lemmon, Emily Moriarty
Vences, Miguel
Joger, Ulrich
Schulte, Ulrich
Slimani, Tahar
El Mouden, El Hassan
Bouazza, Abdellah
Kuenzel, Sven
Lemmon, Alan R.
Lemmon, Emily Moriarty
Vences, Miguel
author_role author
author2 Joger, Ulrich
Schulte, Ulrich
Slimani, Tahar
El Mouden, El Hassan
Bouazza, Abdellah
Kuenzel, Sven
Lemmon, Alan R.
Lemmon, Emily Moriarty
Vences, Miguel
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Staatliches Nat Hist Museum
Buro Faunist Gutachten
Cadi Ayyad Univ
Max Planck Inst Evolut Biol
Florida State Univ
Tech Univ Carolo Wilhelmina Braunschweig
dc.contributor.author.fl_str_mv Lyra, Mariana L. [UNESP]
Joger, Ulrich
Schulte, Ulrich
Slimani, Tahar
El Mouden, El Hassan
Bouazza, Abdellah
Kuenzel, Sven
Lemmon, Alan R.
Lemmon, Emily Moriarty
Vences, Miguel
dc.subject.por.fl_str_mv Squamata
Gekkota
Sphaerodactylidae
Quedenfeldtia moerens
Quedenfeldtia trachyblepharus
Morocco
topic Squamata
Gekkota
Sphaerodactylidae
Quedenfeldtia moerens
Quedenfeldtia trachyblepharus
Morocco
description The nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
2018-11-26T17:44:49Z
2018-11-26T17:44:49Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1080/23802359.2017.1339212
Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017.
2380-2359
http://hdl.handle.net/11449/163754
10.1080/23802359.2017.1339212
WOS:000423158200015
WOS000423158200015.pdf
url http://dx.doi.org/10.1080/23802359.2017.1339212
http://hdl.handle.net/11449/163754
identifier_str_mv Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017.
2380-2359
10.1080/23802359.2017.1339212
WOS:000423158200015
WOS000423158200015.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mitochondrial Dna Part B-resources
0,180
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 356-358
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis Ltd
publisher.none.fl_str_mv Taylor & Francis Ltd
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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dc.identifier.doi.none.fl_str_mv 10.1080/23802359.2017.1339212