The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
Autor(a) principal: | |
---|---|
Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
DOI: | 10.1080/23802359.2017.1339212 |
Texto Completo: | http://dx.doi.org/10.1080/23802359.2017.1339212 http://hdl.handle.net/11449/163754 |
Resumo: | The nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos. |
id |
UNSP_abd221817a561e94bd4185e89f5ba2c3 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/163754 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasetsSquamataGekkotaSphaerodactylidaeQuedenfeldtia moerensQuedenfeldtia trachyblepharusMoroccoThe nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.Moroccan-German project research project of the Bundesministerium fur Bildung und ForschungHassan II Academy project (ICGVSA)Univ Estadual Paulista, UNESP, Inst Biociencias, Dept Zool, Rio Claro, BrazilStaatliches Nat Hist Museum, Braunschweig, GermanyBuro Faunist Gutachten, Borgholzhausen, GermanyCadi Ayyad Univ, Fac Sci, Biodivers & Ecosyst Dynam Lab, Marrakech, MoroccoMax Planck Inst Evolut Biol, Plon, GermanyFlorida State Univ, Dept Comp Sci, Dirac Sci Lib, Tallahassee, FL 32306 USAFlorida State Univ, Dept Biol Sci, B-157, Tallahassee, FL 32306 USATech Univ Carolo Wilhelmina Braunschweig, Zool Inst, Mendelssohnstr 4, D-38106 Braunschweig, GermanyUniv Estadual Paulista, UNESP, Inst Biociencias, Dept Zool, Rio Claro, BrazilMoroccan-German project research project of the Bundesministerium fur Bildung und Forschung: 12/07Taylor & Francis LtdUniversidade Estadual Paulista (Unesp)Staatliches Nat Hist MuseumBuro Faunist GutachtenCadi Ayyad UnivMax Planck Inst Evolut BiolFlorida State UnivTech Univ Carolo Wilhelmina BraunschweigLyra, Mariana L. [UNESP]Joger, UlrichSchulte, UlrichSlimani, TaharEl Mouden, El HassanBouazza, AbdellahKuenzel, SvenLemmon, Alan R.Lemmon, Emily MoriartyVences, Miguel2018-11-26T17:44:49Z2018-11-26T17:44:49Z2017-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article356-358application/pdfhttp://dx.doi.org/10.1080/23802359.2017.1339212Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017.2380-2359http://hdl.handle.net/11449/16375410.1080/23802359.2017.1339212WOS:000423158200015WOS000423158200015.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial Dna Part B-resources0,180info:eu-repo/semantics/openAccess2023-12-28T06:19:37Zoai:repositorio.unesp.br:11449/163754Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:31:40.641796Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
title |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
spellingShingle |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets Lyra, Mariana L. [UNESP] Squamata Gekkota Sphaerodactylidae Quedenfeldtia moerens Quedenfeldtia trachyblepharus Morocco Lyra, Mariana L. [UNESP] Squamata Gekkota Sphaerodactylidae Quedenfeldtia moerens Quedenfeldtia trachyblepharus Morocco |
title_short |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
title_full |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
title_fullStr |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
title_full_unstemmed |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
title_sort |
The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets |
author |
Lyra, Mariana L. [UNESP] |
author_facet |
Lyra, Mariana L. [UNESP] Lyra, Mariana L. [UNESP] Joger, Ulrich Schulte, Ulrich Slimani, Tahar El Mouden, El Hassan Bouazza, Abdellah Kuenzel, Sven Lemmon, Alan R. Lemmon, Emily Moriarty Vences, Miguel Joger, Ulrich Schulte, Ulrich Slimani, Tahar El Mouden, El Hassan Bouazza, Abdellah Kuenzel, Sven Lemmon, Alan R. Lemmon, Emily Moriarty Vences, Miguel |
author_role |
author |
author2 |
Joger, Ulrich Schulte, Ulrich Slimani, Tahar El Mouden, El Hassan Bouazza, Abdellah Kuenzel, Sven Lemmon, Alan R. Lemmon, Emily Moriarty Vences, Miguel |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Staatliches Nat Hist Museum Buro Faunist Gutachten Cadi Ayyad Univ Max Planck Inst Evolut Biol Florida State Univ Tech Univ Carolo Wilhelmina Braunschweig |
dc.contributor.author.fl_str_mv |
Lyra, Mariana L. [UNESP] Joger, Ulrich Schulte, Ulrich Slimani, Tahar El Mouden, El Hassan Bouazza, Abdellah Kuenzel, Sven Lemmon, Alan R. Lemmon, Emily Moriarty Vences, Miguel |
dc.subject.por.fl_str_mv |
Squamata Gekkota Sphaerodactylidae Quedenfeldtia moerens Quedenfeldtia trachyblepharus Morocco |
topic |
Squamata Gekkota Sphaerodactylidae Quedenfeldtia moerens Quedenfeldtia trachyblepharus Morocco |
description |
The nearly complete mitogenomes of the two species of North African Atlas geckos, Quedenfeldtia moerens and Q. trachyblepharus were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-01-01 2018-11-26T17:44:49Z 2018-11-26T17:44:49Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1080/23802359.2017.1339212 Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017. 2380-2359 http://hdl.handle.net/11449/163754 10.1080/23802359.2017.1339212 WOS:000423158200015 WOS000423158200015.pdf |
url |
http://dx.doi.org/10.1080/23802359.2017.1339212 http://hdl.handle.net/11449/163754 |
identifier_str_mv |
Mitochondrial Dna Part B-resources. Abingdon: Taylor & Francis Ltd, v. 2, n. 1, p. 356-358, 2017. 2380-2359 10.1080/23802359.2017.1339212 WOS:000423158200015 WOS000423158200015.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Mitochondrial Dna Part B-resources 0,180 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
356-358 application/pdf |
dc.publisher.none.fl_str_mv |
Taylor & Francis Ltd |
publisher.none.fl_str_mv |
Taylor & Francis Ltd |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1822218415198175232 |
dc.identifier.doi.none.fl_str_mv |
10.1080/23802359.2017.1339212 |