The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1007/s00438-016-1204-1 http://hdl.handle.net/11449/168591 |
Resumo: | The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit. |
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The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organizationFISHGenomeMultigene familyNon-transcribed spacerRepetitive DNAsThe 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.Departamento de Biologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaLaboratorio de Genética Evolutiva IBS Facultad de Ciencias Exactas Químicas y Naturales CONICET Universidad Nacional de MisionesDepartamento de Zoologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaDepartamento de Biologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaDepartamento de Zoologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaUniversidade Estadual Paulista (Unesp)Universidad Nacional de MisionesBueno, Danilo [UNESP]Palacios-Gimenez, Octavio Manuel [UNESP]Martí, Dardo AndreaMariguela, Tatiane Casagrande [UNESP]Cabral-de-Mello, Diogo Cavalcanti [UNESP]2018-12-11T16:42:04Z2018-12-11T16:42:04Z2016-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1607-1613application/pdfhttp://dx.doi.org/10.1007/s00438-016-1204-1Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016.1617-46231617-4615http://hdl.handle.net/11449/16859110.1007/s00438-016-1204-12-s2.0-849641941502-s2.0-84964194150.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMolecular Genetics and Genomics1,1681,168info:eu-repo/semantics/openAccess2024-01-24T06:29:15Zoai:repositorio.unesp.br:11449/168591Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:49:14.451179Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
title |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
spellingShingle |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization Bueno, Danilo [UNESP] FISH Genome Multigene family Non-transcribed spacer Repetitive DNAs |
title_short |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
title_full |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
title_fullStr |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
title_full_unstemmed |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
title_sort |
The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization |
author |
Bueno, Danilo [UNESP] |
author_facet |
Bueno, Danilo [UNESP] Palacios-Gimenez, Octavio Manuel [UNESP] Martí, Dardo Andrea Mariguela, Tatiane Casagrande [UNESP] Cabral-de-Mello, Diogo Cavalcanti [UNESP] |
author_role |
author |
author2 |
Palacios-Gimenez, Octavio Manuel [UNESP] Martí, Dardo Andrea Mariguela, Tatiane Casagrande [UNESP] Cabral-de-Mello, Diogo Cavalcanti [UNESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidad Nacional de Misiones |
dc.contributor.author.fl_str_mv |
Bueno, Danilo [UNESP] Palacios-Gimenez, Octavio Manuel [UNESP] Martí, Dardo Andrea Mariguela, Tatiane Casagrande [UNESP] Cabral-de-Mello, Diogo Cavalcanti [UNESP] |
dc.subject.por.fl_str_mv |
FISH Genome Multigene family Non-transcribed spacer Repetitive DNAs |
topic |
FISH Genome Multigene family Non-transcribed spacer Repetitive DNAs |
description |
The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-08-01 2018-12-11T16:42:04Z 2018-12-11T16:42:04Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s00438-016-1204-1 Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016. 1617-4623 1617-4615 http://hdl.handle.net/11449/168591 10.1007/s00438-016-1204-1 2-s2.0-84964194150 2-s2.0-84964194150.pdf |
url |
http://dx.doi.org/10.1007/s00438-016-1204-1 http://hdl.handle.net/11449/168591 |
identifier_str_mv |
Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016. 1617-4623 1617-4615 10.1007/s00438-016-1204-1 2-s2.0-84964194150 2-s2.0-84964194150.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Molecular Genetics and Genomics 1,168 1,168 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1607-1613 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129555256311808 |