Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1007/s13246-022-01118-2 http://hdl.handle.net/11449/230681 |
Resumo: | Several studies have demonstrated statistical and texture analysis abilities to differentiate cancerous from healthy tissue in magnetic resonance imaging. This study developed a method based on texture analysis and machine learning to differentiate prostate findings. Forty-eight male patients with PI-RADS classification and subsequent radical prostatectomy histopathological analysis were used as gold standard. Experienced radiologists delimited the regions of interest in magnetic resonance images. Six different groups of images were used to perform multiple analyses (seven analyses variations). Those analyses were outlined by specialists in urology as those of most significant importance for the classification. Forty texture features were extracted from each image and processed with Random Forest, Support Vector Machine, K-Nearest Neighbors, and Naive Bayes. Those seven analyses variation results were described in terms of area under the ROC curve (AUC), accuracy, F-score, precision and sensitivity. The highest AUC (93.7%) and accuracy (88.8%) were obtained when differentiating the group with both MRI and histopathology positive findings against the group with both negative MRI and histopathology. When differentiating the group with both MRI and histopathology positive findings versus the peripheral image zone group the AUC value was 86.6%. When differentiating the group with negative MRI/positive histopathology versus the group with both negative MRI and histopathology the AUC value was 80.7%. The evaluation of statistical and texture analysis promoted very suggestive indications for future work in prostate cancer suspicious regions. The method is fast for both region of interest selection and classification with machine learning and the result brings original contributions in the classification of different groups of patients. This tool is low-cost, and can be used to assist diagnostic decisions. |
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Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissueHistopathologyMachine learningMagnetic resonance imagingProstate cancerTexture analysisSeveral studies have demonstrated statistical and texture analysis abilities to differentiate cancerous from healthy tissue in magnetic resonance imaging. This study developed a method based on texture analysis and machine learning to differentiate prostate findings. Forty-eight male patients with PI-RADS classification and subsequent radical prostatectomy histopathological analysis were used as gold standard. Experienced radiologists delimited the regions of interest in magnetic resonance images. Six different groups of images were used to perform multiple analyses (seven analyses variations). Those analyses were outlined by specialists in urology as those of most significant importance for the classification. Forty texture features were extracted from each image and processed with Random Forest, Support Vector Machine, K-Nearest Neighbors, and Naive Bayes. Those seven analyses variation results were described in terms of area under the ROC curve (AUC), accuracy, F-score, precision and sensitivity. The highest AUC (93.7%) and accuracy (88.8%) were obtained when differentiating the group with both MRI and histopathology positive findings against the group with both negative MRI and histopathology. When differentiating the group with both MRI and histopathology positive findings versus the peripheral image zone group the AUC value was 86.6%. When differentiating the group with negative MRI/positive histopathology versus the group with both negative MRI and histopathology the AUC value was 80.7%. The evaluation of statistical and texture analysis promoted very suggestive indications for future work in prostate cancer suspicious regions. The method is fast for both region of interest selection and classification with machine learning and the result brings original contributions in the classification of different groups of patients. This tool is low-cost, and can be used to assist diagnostic decisions.São Paulo State University Júlio de Mesquita Filho, R. Prof. Dr. Antônio Celso Wagner Zanin, 250 - Distrito de Rubião Junior, SPDepartment of Urology UroScience State University of Campinas Unicamp and Pontifical Catholic University of Campinas PUC-Campinas, Av. John Boyd Dunlop-Jardim Ipaussurama, SPBotucatu Medical School Clinics Hospital Medical Physics and Radioprotection Nucleus, Av. Prof. Mário Rubens Guimarães Montenegro, s/n - UNESP - Campus de Botucatu, SPDepartment of Radiology Pontifical Catholic University of Campinas, SPDepartment of Anatomic Pathology and Urology School of Medical Sciences State University of Campinas (Unicamp)Department of Urology Botucatu Medical School São Paulo State University (UNESP), SPDepartment of Radiology University of Campinas (UNICAMP), SPBotucatu Medical School São Paulo State University Júlio de Mesquita Filho, Av. Prof. Mário Rubens Guimarães Montenegro, s/n - UNESP - Campus de Botucatu, SPInstitute of Bioscience São Paulo State University Júlio de Mesquita Filho, R. Prof. Dr. Antônio Celso Wagner Zanin, 250 - Distrito de Rubião Junior, SPSão Paulo State University Júlio de Mesquita Filho, R. Prof. Dr. Antônio Celso Wagner Zanin, 250 - Distrito de Rubião Junior, SPBotucatu Medical School Clinics Hospital Medical Physics and Radioprotection Nucleus, Av. Prof. Mário Rubens Guimarães Montenegro, s/n - UNESP - Campus de Botucatu, SPDepartment of Urology Botucatu Medical School São Paulo State University (UNESP), SPBotucatu Medical School São Paulo State University Júlio de Mesquita Filho, Av. Prof. Mário Rubens Guimarães Montenegro, s/n - UNESP - Campus de Botucatu, SPInstitute of Bioscience São Paulo State University Júlio de Mesquita Filho, R. Prof. Dr. Antônio Celso Wagner Zanin, 250 - Distrito de Rubião Junior, SPUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)Souza, Sérgio Augusto Santana [UNESP]Reis, Leonardo OliveiraAlves, Allan Felipe Fattori [UNESP]Silva, Letícia Cotinguiba [UNESP]Medeiros, Maria Clara KorndorferAndrade, Danilo LeiteBillis, AthanaseAmaro, João Luiz [UNESP]Martins, Daniel LahanTrindade, André Petean [UNESP]Miranda, José Ricardo Arruda [UNESP]Pina, Diana Rodrigues [UNESP]2022-04-29T08:41:29Z2022-04-29T08:41:29Z2022-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s13246-022-01118-2Physical and Engineering Sciences in Medicine.2662-47372662-4729http://hdl.handle.net/11449/23068110.1007/s13246-022-01118-22-s2.0-85127617059Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPhysical and Engineering Sciences in Medicineinfo:eu-repo/semantics/openAccess2024-09-03T14:29:55Zoai:repositorio.unesp.br:11449/230681Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-03T14:29:55Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
title |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
spellingShingle |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue Souza, Sérgio Augusto Santana [UNESP] Histopathology Machine learning Magnetic resonance imaging Prostate cancer Texture analysis |
title_short |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
title_full |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
title_fullStr |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
title_full_unstemmed |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
title_sort |
Multiple analyses suggests texture features can indicate the presence of tumor in the prostate tissue |
author |
Souza, Sérgio Augusto Santana [UNESP] |
author_facet |
Souza, Sérgio Augusto Santana [UNESP] Reis, Leonardo Oliveira Alves, Allan Felipe Fattori [UNESP] Silva, Letícia Cotinguiba [UNESP] Medeiros, Maria Clara Korndorfer Andrade, Danilo Leite Billis, Athanase Amaro, João Luiz [UNESP] Martins, Daniel Lahan Trindade, André Petean [UNESP] Miranda, José Ricardo Arruda [UNESP] Pina, Diana Rodrigues [UNESP] |
author_role |
author |
author2 |
Reis, Leonardo Oliveira Alves, Allan Felipe Fattori [UNESP] Silva, Letícia Cotinguiba [UNESP] Medeiros, Maria Clara Korndorfer Andrade, Danilo Leite Billis, Athanase Amaro, João Luiz [UNESP] Martins, Daniel Lahan Trindade, André Petean [UNESP] Miranda, José Ricardo Arruda [UNESP] Pina, Diana Rodrigues [UNESP] |
author2_role |
author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) Universidade Estadual de Campinas (UNICAMP) |
dc.contributor.author.fl_str_mv |
Souza, Sérgio Augusto Santana [UNESP] Reis, Leonardo Oliveira Alves, Allan Felipe Fattori [UNESP] Silva, Letícia Cotinguiba [UNESP] Medeiros, Maria Clara Korndorfer Andrade, Danilo Leite Billis, Athanase Amaro, João Luiz [UNESP] Martins, Daniel Lahan Trindade, André Petean [UNESP] Miranda, José Ricardo Arruda [UNESP] Pina, Diana Rodrigues [UNESP] |
dc.subject.por.fl_str_mv |
Histopathology Machine learning Magnetic resonance imaging Prostate cancer Texture analysis |
topic |
Histopathology Machine learning Magnetic resonance imaging Prostate cancer Texture analysis |
description |
Several studies have demonstrated statistical and texture analysis abilities to differentiate cancerous from healthy tissue in magnetic resonance imaging. This study developed a method based on texture analysis and machine learning to differentiate prostate findings. Forty-eight male patients with PI-RADS classification and subsequent radical prostatectomy histopathological analysis were used as gold standard. Experienced radiologists delimited the regions of interest in magnetic resonance images. Six different groups of images were used to perform multiple analyses (seven analyses variations). Those analyses were outlined by specialists in urology as those of most significant importance for the classification. Forty texture features were extracted from each image and processed with Random Forest, Support Vector Machine, K-Nearest Neighbors, and Naive Bayes. Those seven analyses variation results were described in terms of area under the ROC curve (AUC), accuracy, F-score, precision and sensitivity. The highest AUC (93.7%) and accuracy (88.8%) were obtained when differentiating the group with both MRI and histopathology positive findings against the group with both negative MRI and histopathology. When differentiating the group with both MRI and histopathology positive findings versus the peripheral image zone group the AUC value was 86.6%. When differentiating the group with negative MRI/positive histopathology versus the group with both negative MRI and histopathology the AUC value was 80.7%. The evaluation of statistical and texture analysis promoted very suggestive indications for future work in prostate cancer suspicious regions. The method is fast for both region of interest selection and classification with machine learning and the result brings original contributions in the classification of different groups of patients. This tool is low-cost, and can be used to assist diagnostic decisions. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-04-29T08:41:29Z 2022-04-29T08:41:29Z 2022-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s13246-022-01118-2 Physical and Engineering Sciences in Medicine. 2662-4737 2662-4729 http://hdl.handle.net/11449/230681 10.1007/s13246-022-01118-2 2-s2.0-85127617059 |
url |
http://dx.doi.org/10.1007/s13246-022-01118-2 http://hdl.handle.net/11449/230681 |
identifier_str_mv |
Physical and Engineering Sciences in Medicine. 2662-4737 2662-4729 10.1007/s13246-022-01118-2 2-s2.0-85127617059 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Physical and Engineering Sciences in Medicine |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021358433730560 |