Reactivation of multiple fetal mirnas in lung adenocarcinoma

Detalhes bibliográficos
Autor(a) principal: Cohn, David E.
Data de Publicação: 2021
Outros Autores: Barros-Filho, Mateus C., Minatel, Brenda C., Pewarchuk, Michelle E., Marshall, Erin A., Vucic, Emily A., Sage, Adam P., Telkar, Nikita, Stewart, Greg L., Jurisica, Igor, Reis, Patricia P. [UNESP], Robinson, Wendy P., Lam, Wan L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/cancers13112686
http://hdl.handle.net/11449/206405
Resumo: MicroRNAs (miRNAs) play vital roles in the regulation of normal developmental pathways. However, cancer cells can co-opt these miRNAs, and the pathways that they regulate, to drive pro-tumourigenic phenotypes. Characterization of the miRNA transcriptomes of fetal organs is essential for identifying these oncofetal miRNAs, but it has been limited by fetal sample availability. As oncofetal miRNAs are absent from healthy adult lungs, they represent ideal targets for developing diagnostic and therapeutic strategies. We conducted small RNA sequencing of a rare collection of 25 human fetal lung (FL) samples and compared them to two independent cohorts (n = 140, n = 427), each comprised of adult non-neoplastic lung (ANL) and lung adenocarcinoma (LUAD) samples. We identified 13 oncofetal miRNAs that were expressed in FL and LUAD but not in ANL. These oncofetal miRNAs are potential biomarkers for LUAD detection (AUC = 0.963). Five of these miRNAs are derived from the imprinted C14MC miRNA cluster at the 14q32 locus, which has been associated with cancer development and abnormal fetal and placental development. Additionally, we observed the pulmonary expression of 44 previously unannotated miRNAs. The sequencing of these fetal lung samples also provides a baseline resource against which aberrant samples can be compared.
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spelling Reactivation of multiple fetal mirnas in lung adenocarcinomaLung adenocarcinomaMicroRNANovel microRNAOncofetalMicroRNAs (miRNAs) play vital roles in the regulation of normal developmental pathways. However, cancer cells can co-opt these miRNAs, and the pathways that they regulate, to drive pro-tumourigenic phenotypes. Characterization of the miRNA transcriptomes of fetal organs is essential for identifying these oncofetal miRNAs, but it has been limited by fetal sample availability. As oncofetal miRNAs are absent from healthy adult lungs, they represent ideal targets for developing diagnostic and therapeutic strategies. We conducted small RNA sequencing of a rare collection of 25 human fetal lung (FL) samples and compared them to two independent cohorts (n = 140, n = 427), each comprised of adult non-neoplastic lung (ANL) and lung adenocarcinoma (LUAD) samples. We identified 13 oncofetal miRNAs that were expressed in FL and LUAD but not in ANL. These oncofetal miRNAs are potential biomarkers for LUAD detection (AUC = 0.963). Five of these miRNAs are derived from the imprinted C14MC miRNA cluster at the 14q32 locus, which has been associated with cancer development and abnormal fetal and placental development. Additionally, we observed the pulmonary expression of 44 previously unannotated miRNAs. The sequencing of these fetal lung samples also provides a baseline resource against which aberrant samples can be compared.Krembil FoundationCanada Foundation for InnovationNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchBritish Columbia Cancer Research CentreInternational Research Center A.C. Camargo Cancer CenterNYU Langone Medical CenterBritish Columbia Children’s Hospital Research InstituteDepartment of Medical Genetics University of British ColumbiaDivision of Orthopedic Surgery Schroeder Arthritis Institute University Health NetworkData Science Discovery Centre for Chronic Diseases Krembil Research Institute University Health NetworkDepartment of Medical Biophysics University of TorontoDepartment of Computer Science University of TorontoFaculty of Medicine São Paulo State University (UNESP)Faculty of Medicine São Paulo State University (UNESP)Canada Foundation for Innovation: 203373Natural Sciences and Engineering Research Council of Canada: 203475Canada Foundation for Innovation: 30865Canadian Institutes of Health Research: FDN-143345British Columbia Cancer Research CentreA.C. Camargo Cancer CenterNYU Langone Medical CenterBritish Columbia Children’s Hospital Research InstituteUniversity of British ColumbiaUniversity Health NetworkUniversity of TorontoUniversidade Estadual Paulista (Unesp)Cohn, David E.Barros-Filho, Mateus C.Minatel, Brenda C.Pewarchuk, Michelle E.Marshall, Erin A.Vucic, Emily A.Sage, Adam P.Telkar, NikitaStewart, Greg L.Jurisica, IgorReis, Patricia P. [UNESP]Robinson, Wendy P.Lam, Wan L.2021-06-25T10:31:29Z2021-06-25T10:31:29Z2021-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/cancers13112686Cancers, v. 13, n. 11, 2021.2072-6694http://hdl.handle.net/11449/20640510.3390/cancers131126862-s2.0-85106732971Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengCancersinfo:eu-repo/semantics/openAccess2021-10-22T22:24:09Zoai:repositorio.unesp.br:11449/206405Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:32:23.397847Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Reactivation of multiple fetal mirnas in lung adenocarcinoma
title Reactivation of multiple fetal mirnas in lung adenocarcinoma
spellingShingle Reactivation of multiple fetal mirnas in lung adenocarcinoma
Cohn, David E.
Lung adenocarcinoma
MicroRNA
Novel microRNA
Oncofetal
title_short Reactivation of multiple fetal mirnas in lung adenocarcinoma
title_full Reactivation of multiple fetal mirnas in lung adenocarcinoma
title_fullStr Reactivation of multiple fetal mirnas in lung adenocarcinoma
title_full_unstemmed Reactivation of multiple fetal mirnas in lung adenocarcinoma
title_sort Reactivation of multiple fetal mirnas in lung adenocarcinoma
author Cohn, David E.
author_facet Cohn, David E.
Barros-Filho, Mateus C.
Minatel, Brenda C.
Pewarchuk, Michelle E.
Marshall, Erin A.
Vucic, Emily A.
Sage, Adam P.
Telkar, Nikita
Stewart, Greg L.
Jurisica, Igor
Reis, Patricia P. [UNESP]
Robinson, Wendy P.
Lam, Wan L.
author_role author
author2 Barros-Filho, Mateus C.
Minatel, Brenda C.
Pewarchuk, Michelle E.
Marshall, Erin A.
Vucic, Emily A.
Sage, Adam P.
Telkar, Nikita
Stewart, Greg L.
Jurisica, Igor
Reis, Patricia P. [UNESP]
Robinson, Wendy P.
Lam, Wan L.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv British Columbia Cancer Research Centre
A.C. Camargo Cancer Center
NYU Langone Medical Center
British Columbia Children’s Hospital Research Institute
University of British Columbia
University Health Network
University of Toronto
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Cohn, David E.
Barros-Filho, Mateus C.
Minatel, Brenda C.
Pewarchuk, Michelle E.
Marshall, Erin A.
Vucic, Emily A.
Sage, Adam P.
Telkar, Nikita
Stewart, Greg L.
Jurisica, Igor
Reis, Patricia P. [UNESP]
Robinson, Wendy P.
Lam, Wan L.
dc.subject.por.fl_str_mv Lung adenocarcinoma
MicroRNA
Novel microRNA
Oncofetal
topic Lung adenocarcinoma
MicroRNA
Novel microRNA
Oncofetal
description MicroRNAs (miRNAs) play vital roles in the regulation of normal developmental pathways. However, cancer cells can co-opt these miRNAs, and the pathways that they regulate, to drive pro-tumourigenic phenotypes. Characterization of the miRNA transcriptomes of fetal organs is essential for identifying these oncofetal miRNAs, but it has been limited by fetal sample availability. As oncofetal miRNAs are absent from healthy adult lungs, they represent ideal targets for developing diagnostic and therapeutic strategies. We conducted small RNA sequencing of a rare collection of 25 human fetal lung (FL) samples and compared them to two independent cohorts (n = 140, n = 427), each comprised of adult non-neoplastic lung (ANL) and lung adenocarcinoma (LUAD) samples. We identified 13 oncofetal miRNAs that were expressed in FL and LUAD but not in ANL. These oncofetal miRNAs are potential biomarkers for LUAD detection (AUC = 0.963). Five of these miRNAs are derived from the imprinted C14MC miRNA cluster at the 14q32 locus, which has been associated with cancer development and abnormal fetal and placental development. Additionally, we observed the pulmonary expression of 44 previously unannotated miRNAs. The sequencing of these fetal lung samples also provides a baseline resource against which aberrant samples can be compared.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T10:31:29Z
2021-06-25T10:31:29Z
2021-06-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/cancers13112686
Cancers, v. 13, n. 11, 2021.
2072-6694
http://hdl.handle.net/11449/206405
10.3390/cancers13112686
2-s2.0-85106732971
url http://dx.doi.org/10.3390/cancers13112686
http://hdl.handle.net/11449/206405
identifier_str_mv Cancers, v. 13, n. 11, 2021.
2072-6694
10.3390/cancers13112686
2-s2.0-85106732971
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cancers
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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