Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae

Detalhes bibliográficos
Autor(a) principal: Taggart, Nathan T. E.
Data de Publicação: 2023
Outros Autores: Crabtree, Angela M. A., Creagh, Jack W. M., Bizarria, Rodolfo M. [UNESP], Li, Shunji, la Higuera, Ignacio A. de, Barnes, Jonathan E., Shipley, Mason A., Boyer, Josephine M., Stedman, Kenneth M., Ytreberg, F. Marty, Rowley, Paul A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.ppat.1011418
http://hdl.handle.net/11449/245662
Resumo: It has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae. A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S. cerevisiae has identified multiple novel viruses from the family Partitiviridae that have been previously shown to infect plants, fungi, protozoans, and insects. Most S. cerevisiae partitiviruses (ScPVs) are associated with strains of yeasts isolated from coffee and cacao beans. The presence of partitiviruses was confirmed by sequencing the viral dsRNAs and purifying and visualizing isometric, non-enveloped viral particles. ScPVs have a typical bipartite genome encoding an RNA-dependent RNA polymerase (RdRP) and a coat protein (CP). Phylogenetic analysis of ScPVs identified three species of ScPV, which are most closely related to viruses of the genus Cryspovirus from the mammalian pathogenic protozoan Cryptosporidium parvum. Molecular modeling of the ScPV RdRP revealed a conserved tertiary structure and catalytic site organization when compared to the RdRPs of the Picornaviridae. The ScPV CP is the smallest so far identified in the Partitiviridae and has structural homology with the CP of other partitiviruses but likely lacks a protrusion domain that is a conspicuous feature of other partitivirus particles. ScPVs were stably maintained during laboratory growth and were successfully transferred to haploid progeny after sporulation, which provides future opportunities to study partitivirus-host interactions using the powerful genetic tools available for the model organism S. cerevisiae. Author summaryThis article describes the discovery and characterization of multiple strains and species of viruses from the family Partitiviridae in the brewer's and baker's yeast S. cerevisiae. These novel viruses have bipartite genomes packaged in spherical viral particles with structural homology to members of the family Partitiviridae. Strikingly, yeast partitiviruses are most closely related to viruses from human pathogenic protozoa and not partitiviruses of other fungi. As partitiviruses can positively and negatively contribute to a host's physiology (including important human and plant pathogens), the presence of partitiviruses in S. cerevisiae offers a unique opportunity to study the biology of these viruses in a well-developed model system.
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spelling Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiaeIt has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae. A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S. cerevisiae has identified multiple novel viruses from the family Partitiviridae that have been previously shown to infect plants, fungi, protozoans, and insects. Most S. cerevisiae partitiviruses (ScPVs) are associated with strains of yeasts isolated from coffee and cacao beans. The presence of partitiviruses was confirmed by sequencing the viral dsRNAs and purifying and visualizing isometric, non-enveloped viral particles. ScPVs have a typical bipartite genome encoding an RNA-dependent RNA polymerase (RdRP) and a coat protein (CP). Phylogenetic analysis of ScPVs identified three species of ScPV, which are most closely related to viruses of the genus Cryspovirus from the mammalian pathogenic protozoan Cryptosporidium parvum. Molecular modeling of the ScPV RdRP revealed a conserved tertiary structure and catalytic site organization when compared to the RdRPs of the Picornaviridae. The ScPV CP is the smallest so far identified in the Partitiviridae and has structural homology with the CP of other partitiviruses but likely lacks a protrusion domain that is a conspicuous feature of other partitivirus particles. ScPVs were stably maintained during laboratory growth and were successfully transferred to haploid progeny after sporulation, which provides future opportunities to study partitivirus-host interactions using the powerful genetic tools available for the model organism S. cerevisiae. Author summaryThis article describes the discovery and characterization of multiple strains and species of viruses from the family Partitiviridae in the brewer's and baker's yeast S. cerevisiae. These novel viruses have bipartite genomes packaged in spherical viral particles with structural homology to members of the family Partitiviridae. Strikingly, yeast partitiviruses are most closely related to viruses from human pathogenic protozoa and not partitiviruses of other fungi. As partitiviruses can positively and negatively contribute to a host's physiology (including important human and plant pathogens), the presence of partitiviruses in S. cerevisiae offers a unique opportunity to study the biology of these viruses in a well-developed model system.National Institute of General Medical Sciences of the National Institutes of HealthNational Science Foundation Division of Molecular and Cellular BiosciencesNational Science Foundation EPSCoR Research Infrastructure Improvement Program: Track-2National Institutes of HealthOffice of Nuclear Energy of the U.S. DOENuclear Science User FacilitiesFunda��o de Amparo � Pesquisa do Estado de S�o Paulo (FAPESP)University of Idaho Office of Undergraduate ResearchDepartment of Biological SciencesDyess Faculty Fellowship, University of Idaho College of ScienceUniv Idaho, Dept Biol Sci, Moscow, ID 83844 USASao Paulo State Univ UNESP, Dept Gen & Appl Biol, Rio Claro, SP, BrazilSao Paulo State Univ UNESP, Ctr Study Social Insects, Rio Claro, SP, BrazilPortland State Univ, Ctr Life Extreme Environm, Dept Biol, Portland, OR USAUniv Idaho, Inst Modeling Collaborat & Innovat, Moscow, ID USAUniv Idaho, Dept Phys, Moscow, ID USASao Paulo State Univ UNESP, Dept Gen & Appl Biol, Rio Claro, SP, BrazilSao Paulo State Univ UNESP, Ctr Study Social Insects, Rio Claro, SP, BrazilNational Institute of General Medical Sciences of the National Institutes of Health: P20 GM104420National Science Foundation Division of Molecular and Cellular Biosciences: 1818368National Science Foundation Division of Molecular and Cellular Biosciences: 2025305National Science Foundation EPSCoR Research Infrastructure Improvement Program: Track-2: OIA-1736253National Institutes of Health: P30 GM103324Nuclear Science User Facilities: DE-AC07-05ID14517FAPESP: 2021/09980-4Public Library ScienceUniv IdahoUniversidade Estadual Paulista (UNESP)Portland State UnivTaggart, Nathan T. E.Crabtree, Angela M. A.Creagh, Jack W. M.Bizarria, Rodolfo M. [UNESP]Li, Shunjila Higuera, Ignacio A. deBarnes, Jonathan E.Shipley, Mason A.Boyer, Josephine M.Stedman, Kenneth M.Ytreberg, F. MartyRowley, Paul A.2023-07-29T12:01:23Z2023-07-29T12:01:23Z2023-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article22http://dx.doi.org/10.1371/journal.ppat.1011418Plos Pathogens. San Francisco: Public Library Science, v. 19, n. 6, 22 p., 2023.1553-7366http://hdl.handle.net/11449/24566210.1371/journal.ppat.1011418WOS:001003237700002Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPlos Pathogensinfo:eu-repo/semantics/openAccess2023-07-29T12:01:23Zoai:repositorio.unesp.br:11449/245662Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:21:05.103642Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
title Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
spellingShingle Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
Taggart, Nathan T. E.
title_short Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
title_full Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
title_fullStr Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
title_full_unstemmed Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
title_sort Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae
author Taggart, Nathan T. E.
author_facet Taggart, Nathan T. E.
Crabtree, Angela M. A.
Creagh, Jack W. M.
Bizarria, Rodolfo M. [UNESP]
Li, Shunji
la Higuera, Ignacio A. de
Barnes, Jonathan E.
Shipley, Mason A.
Boyer, Josephine M.
Stedman, Kenneth M.
Ytreberg, F. Marty
Rowley, Paul A.
author_role author
author2 Crabtree, Angela M. A.
Creagh, Jack W. M.
Bizarria, Rodolfo M. [UNESP]
Li, Shunji
la Higuera, Ignacio A. de
Barnes, Jonathan E.
Shipley, Mason A.
Boyer, Josephine M.
Stedman, Kenneth M.
Ytreberg, F. Marty
Rowley, Paul A.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Univ Idaho
Universidade Estadual Paulista (UNESP)
Portland State Univ
dc.contributor.author.fl_str_mv Taggart, Nathan T. E.
Crabtree, Angela M. A.
Creagh, Jack W. M.
Bizarria, Rodolfo M. [UNESP]
Li, Shunji
la Higuera, Ignacio A. de
Barnes, Jonathan E.
Shipley, Mason A.
Boyer, Josephine M.
Stedman, Kenneth M.
Ytreberg, F. Marty
Rowley, Paul A.
description It has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae. A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S. cerevisiae has identified multiple novel viruses from the family Partitiviridae that have been previously shown to infect plants, fungi, protozoans, and insects. Most S. cerevisiae partitiviruses (ScPVs) are associated with strains of yeasts isolated from coffee and cacao beans. The presence of partitiviruses was confirmed by sequencing the viral dsRNAs and purifying and visualizing isometric, non-enveloped viral particles. ScPVs have a typical bipartite genome encoding an RNA-dependent RNA polymerase (RdRP) and a coat protein (CP). Phylogenetic analysis of ScPVs identified three species of ScPV, which are most closely related to viruses of the genus Cryspovirus from the mammalian pathogenic protozoan Cryptosporidium parvum. Molecular modeling of the ScPV RdRP revealed a conserved tertiary structure and catalytic site organization when compared to the RdRPs of the Picornaviridae. The ScPV CP is the smallest so far identified in the Partitiviridae and has structural homology with the CP of other partitiviruses but likely lacks a protrusion domain that is a conspicuous feature of other partitivirus particles. ScPVs were stably maintained during laboratory growth and were successfully transferred to haploid progeny after sporulation, which provides future opportunities to study partitivirus-host interactions using the powerful genetic tools available for the model organism S. cerevisiae. Author summaryThis article describes the discovery and characterization of multiple strains and species of viruses from the family Partitiviridae in the brewer's and baker's yeast S. cerevisiae. These novel viruses have bipartite genomes packaged in spherical viral particles with structural homology to members of the family Partitiviridae. Strikingly, yeast partitiviruses are most closely related to viruses from human pathogenic protozoa and not partitiviruses of other fungi. As partitiviruses can positively and negatively contribute to a host's physiology (including important human and plant pathogens), the presence of partitiviruses in S. cerevisiae offers a unique opportunity to study the biology of these viruses in a well-developed model system.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T12:01:23Z
2023-07-29T12:01:23Z
2023-06-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.ppat.1011418
Plos Pathogens. San Francisco: Public Library Science, v. 19, n. 6, 22 p., 2023.
1553-7366
http://hdl.handle.net/11449/245662
10.1371/journal.ppat.1011418
WOS:001003237700002
url http://dx.doi.org/10.1371/journal.ppat.1011418
http://hdl.handle.net/11449/245662
identifier_str_mv Plos Pathogens. San Francisco: Public Library Science, v. 19, n. 6, 22 p., 2023.
1553-7366
10.1371/journal.ppat.1011418
WOS:001003237700002
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publisher.none.fl_str_mv Public Library Science
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reponame:Repositório Institucional da UNESP
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