Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques

Detalhes bibliográficos
Autor(a) principal: Santos, Letícia Bernabé [UNESP]
Data de Publicação: 2022
Outros Autores: Bastos, Leonardo Mendes, de Oliveira, Mailson Freire [UNESP], Soares, Pedro Luiz Martins [UNESP], Ciampitti, Ignacio Antonio, da Silva, Rouverson Pereira [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/agronomy12102404
http://hdl.handle.net/11449/249296
Resumo: Identifying nematode damage in large soybean areas is not always achievable in a practical way. Multispectral reflectance sensors have not been thoroughly evaluated to detect nematode damage in soybeans (Glycine max L.). The main research aims of this study were to: (i) determine the bivariate relationship between individual spectral bands and vegetation indices (VIs) relative to soybean conditions (symptomatic versus asymptomatic), and (ii) to select the best model for identifying plant conditions using three algorithms (logistic regression—LR, random forest—RF, conditional inference tree—CIT) and three options for data input using bands, vegetation indices (VIs), and bands plus VIs. The trial was conducted in Brazil on three on-farm soybean fields presenting different species of nematode infestation. Multispectral imagery was obtained using a drone-mounted MicaSense RedEdge® sensor. At each sampling, georeferenced point nematode infestation and spectral measurements of soybean plants were retrieved for the classification of symptomatic and asymptomatic areas, according to the threshold level adopted. Bivariate analysis of variance (ANOVA), LR, RF, and CIT were used to select the multispectral bands/VIs that discriminated among symptomatic and asymptomatic plants, assessing the best model via their respective parameters for accuracy, sensitivity, and specificity. The greatest classification accuracy (>0.70) was achieved when using the CIT algorithm with the spectral bands only, with green (560 ± 20 nm) and near-infrared (840 ± 40 nm) included as the main spectral input variables in the model. These results demonstrate the potential of combining remotely sensed data and machine learning to distinguish nematode-symptomatic and asymptomatic soybean plants.
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spelling Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniquesdigital agriculturedisease detectionmachine learningmultispectral mappingnematodesremote sensingIdentifying nematode damage in large soybean areas is not always achievable in a practical way. Multispectral reflectance sensors have not been thoroughly evaluated to detect nematode damage in soybeans (Glycine max L.). The main research aims of this study were to: (i) determine the bivariate relationship between individual spectral bands and vegetation indices (VIs) relative to soybean conditions (symptomatic versus asymptomatic), and (ii) to select the best model for identifying plant conditions using three algorithms (logistic regression—LR, random forest—RF, conditional inference tree—CIT) and three options for data input using bands, vegetation indices (VIs), and bands plus VIs. The trial was conducted in Brazil on three on-farm soybean fields presenting different species of nematode infestation. Multispectral imagery was obtained using a drone-mounted MicaSense RedEdge® sensor. At each sampling, georeferenced point nematode infestation and spectral measurements of soybean plants were retrieved for the classification of symptomatic and asymptomatic areas, according to the threshold level adopted. Bivariate analysis of variance (ANOVA), LR, RF, and CIT were used to select the multispectral bands/VIs that discriminated among symptomatic and asymptomatic plants, assessing the best model via their respective parameters for accuracy, sensitivity, and specificity. The greatest classification accuracy (>0.70) was achieved when using the CIT algorithm with the spectral bands only, with green (560 ± 20 nm) and near-infrared (840 ± 40 nm) included as the main spectral input variables in the model. These results demonstrate the potential of combining remotely sensed data and machine learning to distinguish nematode-symptomatic and asymptomatic soybean plants.Department of Engineering and Mathematical Sciences São Paulo State University ‘Júlio de Mesquita Filho’ (UNESP) School of Agricultural and Veterinarian Sciences, Via de Acesso Prof. Paulo Donato Castellane, SPDepartment of Agronomy Kansas State University, 1712 Claflin RoadDepartment of Crop and Soil Sciences University of Georgia Miller Plant SciencesDepartment of Crop Soil and Environmental Sciences Auburn University, 350 S College StDepartment of Agricultural Production Sciences São Paulo State University ‘Júlio de Mesquita Filho’ (UNESP) School of Agricultural and Veterinarian Sciences, Via de Acesso Prof. Paulo Donato Castellane, SPDepartment of Engineering and Mathematical Sciences São Paulo State University ‘Júlio de Mesquita Filho’ (UNESP) School of Agricultural and Veterinarian Sciences, Via de Acesso Prof. Paulo Donato Castellane, SPDepartment of Agricultural Production Sciences São Paulo State University ‘Júlio de Mesquita Filho’ (UNESP) School of Agricultural and Veterinarian Sciences, Via de Acesso Prof. Paulo Donato Castellane, SPUniversidade Estadual Paulista (UNESP)Kansas State UniversityMiller Plant SciencesAuburn UniversitySantos, Letícia Bernabé [UNESP]Bastos, Leonardo Mendesde Oliveira, Mailson Freire [UNESP]Soares, Pedro Luiz Martins [UNESP]Ciampitti, Ignacio Antonioda Silva, Rouverson Pereira [UNESP]2023-07-29T15:12:13Z2023-07-29T15:12:13Z2022-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/agronomy12102404Agronomy, v. 12, n. 10, 2022.2073-4395http://hdl.handle.net/11449/24929610.3390/agronomy121024042-s2.0-85140436297Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengAgronomyinfo:eu-repo/semantics/openAccess2024-06-06T15:18:03Zoai:repositorio.unesp.br:11449/249296Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:39:53.246395Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
title Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
spellingShingle Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
Santos, Letícia Bernabé [UNESP]
digital agriculture
disease detection
machine learning
multispectral mapping
nematodes
remote sensing
title_short Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
title_full Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
title_fullStr Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
title_full_unstemmed Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
title_sort Identifying Nematode Damage on Soybean through Remote Sensing and Machine Learning Techniques
author Santos, Letícia Bernabé [UNESP]
author_facet Santos, Letícia Bernabé [UNESP]
Bastos, Leonardo Mendes
de Oliveira, Mailson Freire [UNESP]
Soares, Pedro Luiz Martins [UNESP]
Ciampitti, Ignacio Antonio
da Silva, Rouverson Pereira [UNESP]
author_role author
author2 Bastos, Leonardo Mendes
de Oliveira, Mailson Freire [UNESP]
Soares, Pedro Luiz Martins [UNESP]
Ciampitti, Ignacio Antonio
da Silva, Rouverson Pereira [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Kansas State University
Miller Plant Sciences
Auburn University
dc.contributor.author.fl_str_mv Santos, Letícia Bernabé [UNESP]
Bastos, Leonardo Mendes
de Oliveira, Mailson Freire [UNESP]
Soares, Pedro Luiz Martins [UNESP]
Ciampitti, Ignacio Antonio
da Silva, Rouverson Pereira [UNESP]
dc.subject.por.fl_str_mv digital agriculture
disease detection
machine learning
multispectral mapping
nematodes
remote sensing
topic digital agriculture
disease detection
machine learning
multispectral mapping
nematodes
remote sensing
description Identifying nematode damage in large soybean areas is not always achievable in a practical way. Multispectral reflectance sensors have not been thoroughly evaluated to detect nematode damage in soybeans (Glycine max L.). The main research aims of this study were to: (i) determine the bivariate relationship between individual spectral bands and vegetation indices (VIs) relative to soybean conditions (symptomatic versus asymptomatic), and (ii) to select the best model for identifying plant conditions using three algorithms (logistic regression—LR, random forest—RF, conditional inference tree—CIT) and three options for data input using bands, vegetation indices (VIs), and bands plus VIs. The trial was conducted in Brazil on three on-farm soybean fields presenting different species of nematode infestation. Multispectral imagery was obtained using a drone-mounted MicaSense RedEdge® sensor. At each sampling, georeferenced point nematode infestation and spectral measurements of soybean plants were retrieved for the classification of symptomatic and asymptomatic areas, according to the threshold level adopted. Bivariate analysis of variance (ANOVA), LR, RF, and CIT were used to select the multispectral bands/VIs that discriminated among symptomatic and asymptomatic plants, assessing the best model via their respective parameters for accuracy, sensitivity, and specificity. The greatest classification accuracy (>0.70) was achieved when using the CIT algorithm with the spectral bands only, with green (560 ± 20 nm) and near-infrared (840 ± 40 nm) included as the main spectral input variables in the model. These results demonstrate the potential of combining remotely sensed data and machine learning to distinguish nematode-symptomatic and asymptomatic soybean plants.
publishDate 2022
dc.date.none.fl_str_mv 2022-10-01
2023-07-29T15:12:13Z
2023-07-29T15:12:13Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/agronomy12102404
Agronomy, v. 12, n. 10, 2022.
2073-4395
http://hdl.handle.net/11449/249296
10.3390/agronomy12102404
2-s2.0-85140436297
url http://dx.doi.org/10.3390/agronomy12102404
http://hdl.handle.net/11449/249296
identifier_str_mv Agronomy, v. 12, n. 10, 2022.
2073-4395
10.3390/agronomy12102404
2-s2.0-85140436297
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Agronomy
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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