Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2019 |
| Outros Autores: | , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da UNESP |
| Texto Completo: | http://dx.doi.org/10.1007/s12686-019-01090-2 http://hdl.handle.net/11449/187726 |
Resumo: | Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping. |
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Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa speciesCarapa guianensisCarapa surinamensisDNA-fingerprintsGeographical originMassARRAYMiSeqRADSeqTropical timberLow coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.Bundesministerium für Ernährung und LandwirtschaftConseil Régional AquitaineAgence Nationale de la RechercheINRA UMR0745 EcoFoG AgroParisTech Cirad CNRS Université des Antilles Université de Guyane, Campus Agronomique, Avenue de FranceThünen Institute of Forest Genetics, Sieker Landstrasse 2School of Natural Sciences and Engineering São Paulo State University (UNESP)Carrera de Ingeniería Forestal Laboratorio de Dendrocronología Facultad de Ciencias Agrícolas Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El VallecitoInstituto de Investigaciones de la Amazonía Peruana (IIAP), Av. José A. Quiñones km 2.5Instituto Florestal de São Paulo, CP 1322BIOGECO INRA University BordeauxSchool of Natural Sciences and Engineering São Paulo State University (UNESP)Conseil Régional Aquitaine: 20030304002FAConseil Régional Aquitaine: 20040305003FAAgence Nationale de la Recherche: ANR-10-EQPX-16-01Agence Nationale de la Recherche: ANR-10-LABX-25-01Université de GuyaneThünen Institute of Forest GeneticsUniversidade Estadual Paulista (Unesp)Universidad Autónoma Gabriel René MorenoInstituto de Investigaciones de la Amazonía Peruana (IIAP)Instituto Florestal de São PauloUniversity BordeauxTysklind, NiklasBlanc-Jolivet, CélineMader, MalteMeyer-Sand, Barbara R. V. [UNESP]Paredes-Villanueva, KathelynHonorio Coronado, Eurídice N.García-Dávila, Carmen R.Sebbenn, Alexandre M.Caron, HenriTroispoux, ValerieGuichoux, ErwanDegen, Bernd2019-10-06T15:45:24Z2019-10-06T15:45:24Z2019-09-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article337-339http://dx.doi.org/10.1007/s12686-019-01090-2Conservation Genetics Resources, v. 11, n. 3, p. 337-339, 2019.1877-72601877-7252http://hdl.handle.net/11449/18772610.1007/s12686-019-01090-22-s2.0-85066884617Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengConservation Genetics Resourcesinfo:eu-repo/semantics/openAccess2021-10-23T12:24:09Zoai:repositorio.unesp.br:11449/187726Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:03:05.420556Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
| dc.title.none.fl_str_mv |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| title |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| spellingShingle |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species Tysklind, Niklas Carapa guianensis Carapa surinamensis DNA-fingerprints Geographical origin MassARRAY MiSeq RADSeq Tropical timber |
| title_short |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| title_full |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| title_fullStr |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| title_full_unstemmed |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| title_sort |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
| author |
Tysklind, Niklas |
| author_facet |
Tysklind, Niklas Blanc-Jolivet, Céline Mader, Malte Meyer-Sand, Barbara R. V. [UNESP] Paredes-Villanueva, Kathelyn Honorio Coronado, Eurídice N. García-Dávila, Carmen R. Sebbenn, Alexandre M. Caron, Henri Troispoux, Valerie Guichoux, Erwan Degen, Bernd |
| author_role |
author |
| author2 |
Blanc-Jolivet, Céline Mader, Malte Meyer-Sand, Barbara R. V. [UNESP] Paredes-Villanueva, Kathelyn Honorio Coronado, Eurídice N. García-Dávila, Carmen R. Sebbenn, Alexandre M. Caron, Henri Troispoux, Valerie Guichoux, Erwan Degen, Bernd |
| author2_role |
author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Université de Guyane Thünen Institute of Forest Genetics Universidade Estadual Paulista (Unesp) Universidad Autónoma Gabriel René Moreno Instituto de Investigaciones de la Amazonía Peruana (IIAP) Instituto Florestal de São Paulo University Bordeaux |
| dc.contributor.author.fl_str_mv |
Tysklind, Niklas Blanc-Jolivet, Céline Mader, Malte Meyer-Sand, Barbara R. V. [UNESP] Paredes-Villanueva, Kathelyn Honorio Coronado, Eurídice N. García-Dávila, Carmen R. Sebbenn, Alexandre M. Caron, Henri Troispoux, Valerie Guichoux, Erwan Degen, Bernd |
| dc.subject.por.fl_str_mv |
Carapa guianensis Carapa surinamensis DNA-fingerprints Geographical origin MassARRAY MiSeq RADSeq Tropical timber |
| topic |
Carapa guianensis Carapa surinamensis DNA-fingerprints Geographical origin MassARRAY MiSeq RADSeq Tropical timber |
| description |
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping. |
| publishDate |
2019 |
| dc.date.none.fl_str_mv |
2019-10-06T15:45:24Z 2019-10-06T15:45:24Z 2019-09-15 |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s12686-019-01090-2 Conservation Genetics Resources, v. 11, n. 3, p. 337-339, 2019. 1877-7260 1877-7252 http://hdl.handle.net/11449/187726 10.1007/s12686-019-01090-2 2-s2.0-85066884617 |
| url |
http://dx.doi.org/10.1007/s12686-019-01090-2 http://hdl.handle.net/11449/187726 |
| identifier_str_mv |
Conservation Genetics Resources, v. 11, n. 3, p. 337-339, 2019. 1877-7260 1877-7252 10.1007/s12686-019-01090-2 2-s2.0-85066884617 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
| dc.relation.none.fl_str_mv |
Conservation Genetics Resources |
| dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
| eu_rights_str_mv |
openAccess |
| dc.format.none.fl_str_mv |
337-339 |
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Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
| instname_str |
Universidade Estadual Paulista (UNESP) |
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UNESP |
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UNESP |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
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1808128888813912064 |