Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic

Detalhes bibliográficos
Autor(a) principal: Machado, Leonardo Francisco [UNESP]
Data de Publicação: 2017
Outros Autores: Damasceno, Junio de Souza, Bertoncini, Athila Andrade, Tosta, Vander Calmon, Cazerta Farro, Ana Paula, Hostim-Silva, Mauricio, Oliveira, Claudio [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.jembe.2016.11.005
http://hdl.handle.net/11449/162404
Resumo: Genetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved.
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spelling Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern AtlanticPopulation geneticsReef fishesD-loopCOIHaplotypesSW AtlanticGenetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundacao de Amparo Pesquisa e Inovacao do Espirito SantoPrograma de Pos-graduacao em Biodiversidade Tropical (CEUNES/UFES)Programa de Pos-graduacao em Ciencias Biologicas-Zoologia (IBB/UNESP)Instituto Chico Mendes de Conservacao da NaturezaCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Fed Espirito Santo, PPGBT DCAB CEUNES, Rodovia BR 101 Norte,Km 60, BR-29932540 Sao Mateus, ES, BrazilUniv Fed Espirito Santo, PPGOAM DOC CCHN, Base Oceanog UFES, Caixa Postal 2030, BR-29199970 Aracruz, ES, BrazilUniv Fed Estado Rio de Janeiro, LICTA, Av Pasteur 458, BR-22290240 Rio De Janeiro, RJ, BrazilPontificia Univ Catolica Minas Gerais, Lab Genet Conservacao, Programa Posgrad Biol Vertebrados, Av Dom Jose Gaspar 500, BR-30535901 Belo Horizonte, MG, BrazilUniv Estadual Paulista, Inst Biociencias, Dept Morfol, BR-18618970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, Dept Morfol, BR-18618970 Botucatu, SP, BrazilCNPq: CNPq: 350311/2012-9Fundacao de Amparo Pesquisa e Inovacao do Espirito Santo: FAPES: 54515130/2011Instituto Chico Mendes de Conservacao da Natureza: SISBIO: 38970-1Elsevier B.V.Universidade Federal do Espírito Santo (UFES)Univ Fed Estado Rio de JaneiroPontificia Univ Catolica Minas GeraisUniversidade Estadual Paulista (Unesp)Machado, Leonardo Francisco [UNESP]Damasceno, Junio de SouzaBertoncini, Athila AndradeTosta, Vander CalmonCazerta Farro, Ana PaulaHostim-Silva, MauricioOliveira, Claudio [UNESP]2018-11-26T17:16:33Z2018-11-26T17:16:33Z2017-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article45-52application/pdfhttp://dx.doi.org/10.1016/j.jembe.2016.11.005Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017.0022-0981http://hdl.handle.net/11449/16240410.1016/j.jembe.2016.11.005WOS:000392999900005WOS000392999900005.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal Of Experimental Marine Biology And Ecology1,024info:eu-repo/semantics/openAccess2023-10-05T06:02:47Zoai:repositorio.unesp.br:11449/162404Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:02:52.298806Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
title Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
spellingShingle Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
Machado, Leonardo Francisco [UNESP]
Population genetics
Reef fishes
D-loop
COI
Haplotypes
SW Atlantic
title_short Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
title_full Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
title_fullStr Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
title_full_unstemmed Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
title_sort Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
author Machado, Leonardo Francisco [UNESP]
author_facet Machado, Leonardo Francisco [UNESP]
Damasceno, Junio de Souza
Bertoncini, Athila Andrade
Tosta, Vander Calmon
Cazerta Farro, Ana Paula
Hostim-Silva, Mauricio
Oliveira, Claudio [UNESP]
author_role author
author2 Damasceno, Junio de Souza
Bertoncini, Athila Andrade
Tosta, Vander Calmon
Cazerta Farro, Ana Paula
Hostim-Silva, Mauricio
Oliveira, Claudio [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Espírito Santo (UFES)
Univ Fed Estado Rio de Janeiro
Pontificia Univ Catolica Minas Gerais
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Machado, Leonardo Francisco [UNESP]
Damasceno, Junio de Souza
Bertoncini, Athila Andrade
Tosta, Vander Calmon
Cazerta Farro, Ana Paula
Hostim-Silva, Mauricio
Oliveira, Claudio [UNESP]
dc.subject.por.fl_str_mv Population genetics
Reef fishes
D-loop
COI
Haplotypes
SW Atlantic
topic Population genetics
Reef fishes
D-loop
COI
Haplotypes
SW Atlantic
description Genetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved.
publishDate 2017
dc.date.none.fl_str_mv 2017-02-01
2018-11-26T17:16:33Z
2018-11-26T17:16:33Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.jembe.2016.11.005
Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017.
0022-0981
http://hdl.handle.net/11449/162404
10.1016/j.jembe.2016.11.005
WOS:000392999900005
WOS000392999900005.pdf
url http://dx.doi.org/10.1016/j.jembe.2016.11.005
http://hdl.handle.net/11449/162404
identifier_str_mv Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017.
0022-0981
10.1016/j.jembe.2016.11.005
WOS:000392999900005
WOS000392999900005.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal Of Experimental Marine Biology And Ecology
1,024
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 45-52
application/pdf
dc.publisher.none.fl_str_mv Elsevier B.V.
publisher.none.fl_str_mv Elsevier B.V.
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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