Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.jembe.2016.11.005 http://hdl.handle.net/11449/162404 |
Resumo: | Genetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved. |
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Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern AtlanticPopulation geneticsReef fishesD-loopCOIHaplotypesSW AtlanticGenetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundacao de Amparo Pesquisa e Inovacao do Espirito SantoPrograma de Pos-graduacao em Biodiversidade Tropical (CEUNES/UFES)Programa de Pos-graduacao em Ciencias Biologicas-Zoologia (IBB/UNESP)Instituto Chico Mendes de Conservacao da NaturezaCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Fed Espirito Santo, PPGBT DCAB CEUNES, Rodovia BR 101 Norte,Km 60, BR-29932540 Sao Mateus, ES, BrazilUniv Fed Espirito Santo, PPGOAM DOC CCHN, Base Oceanog UFES, Caixa Postal 2030, BR-29199970 Aracruz, ES, BrazilUniv Fed Estado Rio de Janeiro, LICTA, Av Pasteur 458, BR-22290240 Rio De Janeiro, RJ, BrazilPontificia Univ Catolica Minas Gerais, Lab Genet Conservacao, Programa Posgrad Biol Vertebrados, Av Dom Jose Gaspar 500, BR-30535901 Belo Horizonte, MG, BrazilUniv Estadual Paulista, Inst Biociencias, Dept Morfol, BR-18618970 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias, Dept Morfol, BR-18618970 Botucatu, SP, BrazilCNPq: CNPq: 350311/2012-9Fundacao de Amparo Pesquisa e Inovacao do Espirito Santo: FAPES: 54515130/2011Instituto Chico Mendes de Conservacao da Natureza: SISBIO: 38970-1Elsevier B.V.Universidade Federal do Espírito Santo (UFES)Univ Fed Estado Rio de JaneiroPontificia Univ Catolica Minas GeraisUniversidade Estadual Paulista (Unesp)Machado, Leonardo Francisco [UNESP]Damasceno, Junio de SouzaBertoncini, Athila AndradeTosta, Vander CalmonCazerta Farro, Ana PaulaHostim-Silva, MauricioOliveira, Claudio [UNESP]2018-11-26T17:16:33Z2018-11-26T17:16:33Z2017-02-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article45-52application/pdfhttp://dx.doi.org/10.1016/j.jembe.2016.11.005Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017.0022-0981http://hdl.handle.net/11449/16240410.1016/j.jembe.2016.11.005WOS:000392999900005WOS000392999900005.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal Of Experimental Marine Biology And Ecology1,024info:eu-repo/semantics/openAccess2023-10-05T06:02:47Zoai:repositorio.unesp.br:11449/162404Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:02:52.298806Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
title |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
spellingShingle |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic Machado, Leonardo Francisco [UNESP] Population genetics Reef fishes D-loop COI Haplotypes SW Atlantic |
title_short |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
title_full |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
title_fullStr |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
title_full_unstemmed |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
title_sort |
Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic |
author |
Machado, Leonardo Francisco [UNESP] |
author_facet |
Machado, Leonardo Francisco [UNESP] Damasceno, Junio de Souza Bertoncini, Athila Andrade Tosta, Vander Calmon Cazerta Farro, Ana Paula Hostim-Silva, Mauricio Oliveira, Claudio [UNESP] |
author_role |
author |
author2 |
Damasceno, Junio de Souza Bertoncini, Athila Andrade Tosta, Vander Calmon Cazerta Farro, Ana Paula Hostim-Silva, Mauricio Oliveira, Claudio [UNESP] |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do Espírito Santo (UFES) Univ Fed Estado Rio de Janeiro Pontificia Univ Catolica Minas Gerais Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Machado, Leonardo Francisco [UNESP] Damasceno, Junio de Souza Bertoncini, Athila Andrade Tosta, Vander Calmon Cazerta Farro, Ana Paula Hostim-Silva, Mauricio Oliveira, Claudio [UNESP] |
dc.subject.por.fl_str_mv |
Population genetics Reef fishes D-loop COI Haplotypes SW Atlantic |
topic |
Population genetics Reef fishes D-loop COI Haplotypes SW Atlantic |
description |
Genetic diversity, population structure and demographic history of Chaetodipterus faber in SW Atlantic were investigated using mitochondrial DNA cytochrome c oxidase subunit 1(620 bp) and D-loop (817 bp) sequences. Individuals were collected in five sampling units (SUs) located in latitudes between 2 degrees S and 27 degrees S, southernmost limit of species distribution. The COI sequences from Brazilian sampling units were compared with eight sequences from the Gulf of Mexico and Caribbean, resulting in no significant genetic differences (K2P < 0.32%). On the contrary, pairwise F-ST analysis based on D-loop datasets from the five SUs indicated divergence between Tropical and Subtropical clades of SW Atlantic C. faber. The SAMOVA approach was consistent with this divergence and revealed maximal variance among groups (63.59%) when two clades are simulated (k = 2), setting apart Tropical and Subtropical SUs. Demographic analyses support the hypothesis of population expansion, both for Tropical and Subtropical clades. Moreover, Subtropical population size increase was dated after the Tropical clade reached the demographic stability, around 10 kyr ago, during the beginning of interglacial Pleistocene Holocene transition. The historical demographic results, along with the lower genetic diversity and the star shaped haplotype network of the Subtropical clade corroborate an ancient scenario of the species' adaptive radiation southward. (C) 2016 Elsevier B.V. All rights reserved. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-02-01 2018-11-26T17:16:33Z 2018-11-26T17:16:33Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.jembe.2016.11.005 Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017. 0022-0981 http://hdl.handle.net/11449/162404 10.1016/j.jembe.2016.11.005 WOS:000392999900005 WOS000392999900005.pdf |
url |
http://dx.doi.org/10.1016/j.jembe.2016.11.005 http://hdl.handle.net/11449/162404 |
identifier_str_mv |
Journal Of Experimental Marine Biology And Ecology. Amsterdam: Elsevier Science Bv, v. 487, p. 45-52, 2017. 0022-0981 10.1016/j.jembe.2016.11.005 WOS:000392999900005 WOS000392999900005.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal Of Experimental Marine Biology And Ecology 1,024 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
45-52 application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier B.V. |
publisher.none.fl_str_mv |
Elsevier B.V. |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128309004861440 |