Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri

Bibliographic Details
Main Author: Costa, Maria Lucília Machado da [UNESP]
Publication Date: 2015
Format: Doctoral thesis
Language: por
Source: Repositório Institucional da UNESP
Download full: http://hdl.handle.net/11449/142960
http://www.athena.biblioteca.unesp.br/exlibris/bd/cathedra/14-07-2016/000867494.pdf
Summary: The Gram-negative bacterium Xanthomonas citri subsp. citri (Xac) is the causal agent of citrus canker, disease that causes a significant economic impact on the orange production. Molecular studies involving pathosystems like Xac-citrus have been used to as an approach to understand the pathogenic processes. Therewith, the objective of this study was to investigate the expression of exsF and exsG Xac genes and the effect of its silencing in Xac pathogenicity in Rangpur lime (Citrus limonia Osbeck) leaves and also get the proteins coded by them and use it in initial tests of crystallization. The real-time PCR (qRT-PCR) technique was used in the analysis of gene expression.The in planta expression of exsF and exsG genes were evaluated in Xac isolated from Rangpur lime leaves collected at 48, 72 and 120 h after inoculation compared to Xac growing in NA culture. For the production of Xac double mutant having the ExsF and exsG genes silenced, the site-directed mutagenesis technique by PCR using the suicide vector pOK1 was used. For the production of ExsF and ExsG recombinant proteins, the E. coli heterologous expression in the pET SUMO expression vector was used. Finally, the initial crystallization trials were performed using commercial and non-commercial kits. The gene expression analysis showed that the exsF and exsG genes were induced about 10-fold more after 72 hours of Xac infection in Rangpur lime leaves, compared with the Xac grown in the culture medium. The functional assays performed with the Xac Δ3135/3136 double mutant showed that it was avirulent on Rangpur lime leaves, in contrast to the wild type strain Xac 306. Moreover, the mutation reduced the multiplication of the bacteria in planta. The mutation also affected the biofilm production, that was reduced in the mutated strain. Through the heterologous expression assays and protein purification it was possible to obtain only the ExsG protein, soluble and pure enough to be ...
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spelling Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citriCítricosFrutas citricas - Doenças e pragasGenetica vegetalCancro citricoMutageneseGenesMutagenesisThe Gram-negative bacterium Xanthomonas citri subsp. citri (Xac) is the causal agent of citrus canker, disease that causes a significant economic impact on the orange production. Molecular studies involving pathosystems like Xac-citrus have been used to as an approach to understand the pathogenic processes. Therewith, the objective of this study was to investigate the expression of exsF and exsG Xac genes and the effect of its silencing in Xac pathogenicity in Rangpur lime (Citrus limonia Osbeck) leaves and also get the proteins coded by them and use it in initial tests of crystallization. The real-time PCR (qRT-PCR) technique was used in the analysis of gene expression.The in planta expression of exsF and exsG genes were evaluated in Xac isolated from Rangpur lime leaves collected at 48, 72 and 120 h after inoculation compared to Xac growing in NA culture. For the production of Xac double mutant having the ExsF and exsG genes silenced, the site-directed mutagenesis technique by PCR using the suicide vector pOK1 was used. For the production of ExsF and ExsG recombinant proteins, the E. coli heterologous expression in the pET SUMO expression vector was used. Finally, the initial crystallization trials were performed using commercial and non-commercial kits. The gene expression analysis showed that the exsF and exsG genes were induced about 10-fold more after 72 hours of Xac infection in Rangpur lime leaves, compared with the Xac grown in the culture medium. The functional assays performed with the Xac Δ3135/3136 double mutant showed that it was avirulent on Rangpur lime leaves, in contrast to the wild type strain Xac 306. Moreover, the mutation reduced the multiplication of the bacteria in planta. The mutation also affected the biofilm production, that was reduced in the mutated strain. Through the heterologous expression assays and protein purification it was possible to obtain only the ExsG protein, soluble and pure enough to be ...A bactéria Gram-negativa Xanthomonas citri subsp. citri (Xac) é o agente causal do cancro cítrico, doença ainda sem método curativo que gera grande impacto econômico na produção de laranja. Estudos moleculares envolvendo patossistemas, como o Xac-citros, vêm ganhando espaço no auxílio do entendimento sobre os processos fitopatogênicos. Diante disto, o objetivo do presente trabalho foi investigar a expressão dos genes exsF e exsG de Xac e o efeito dos seus nocautes na patogenicidade de Xac em limoeiro cravo (Citrus limonia Osbeck), bem como obter as proteínas por eles codificadas e utilizá-las em ensaios iniciais de cristalização. Na análise da expressão destes genes, foi utilizada a técnica de PCR em tempo real (qRT-PCR), onde foi avaliada a expressão dos mesmos em Xac inoculada em folhas de limoeiro cravo coletadas em três tempos após a inoculação (48, 72 e 120 h) comparada com a expressão em Xac inoculada em meio de cultura. Já para a produção do mutante duplo de Xac apresentando os genes exsF e exsG nocauteados, foi utilizada a técnica de mutação sítio-dirigida por PCR utilizando o vetor suicida pOK1 e a estratégia de troca alélica. Para a produção das proteínas ExsF e ExsG recombinantes foi utilizada a expressão heteróloga em E. coli através do uso do vetor de expressão pET SUMO e os ensaios iniciais de cristalização foram realizados utilizando-se kits comerciais e não comerciais. A análise da expressão dos genes exsF e exsG revelou que estes foram induzidos, cerca de 10 vezes mais, após 72 horas de infecção da Xac em folhas de limoeiro cravo, em comparação com a Xac multiplicada em meio de cultura. Os ensaios de patogenicidade utilizando o mutante duplo de Xac Δ3135/3136 revelaram que este foi avirulento em folhas de limoeiro cravo, em contraste com a linhagem 306 selvagem, que elicitou os sintomas de cancro cítrico. Além disso, a mutação reduziu a capacidade de multiplicação...Universidade Estadual Paulista (Unesp)Ferro, Jesus Aparecido [UNESP]Universidade Estadual Paulista (Unesp)Costa, Maria Lucília Machado da [UNESP]2016-08-12T18:48:39Z2016-08-12T18:48:39Z2015-02-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisiv, 79 p. : il.application/pdfCOSTA, Maria Lucília Machado da. Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri. 2015. iv, 79 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.http://hdl.handle.net/11449/142960000867494http://www.athena.biblioteca.unesp.br/exlibris/bd/cathedra/14-07-2016/000867494.pdf33004102029P60147241723612464Alephreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPporinfo:eu-repo/semantics/openAccess2023-11-18T06:13:55Zoai:repositorio.unesp.br:11449/142960Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-18T06:13:55Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
title Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
spellingShingle Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
Costa, Maria Lucília Machado da [UNESP]
Cítricos
Frutas citricas - Doenças e pragas
Genetica vegetal
Cancro citrico
Mutagenese
Genes
Mutagenesis
title_short Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
title_full Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
title_fullStr Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
title_full_unstemmed Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
title_sort Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri
author Costa, Maria Lucília Machado da [UNESP]
author_facet Costa, Maria Lucília Machado da [UNESP]
author_role author
dc.contributor.none.fl_str_mv Ferro, Jesus Aparecido [UNESP]
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Costa, Maria Lucília Machado da [UNESP]
dc.subject.por.fl_str_mv Cítricos
Frutas citricas - Doenças e pragas
Genetica vegetal
Cancro citrico
Mutagenese
Genes
Mutagenesis
topic Cítricos
Frutas citricas - Doenças e pragas
Genetica vegetal
Cancro citrico
Mutagenese
Genes
Mutagenesis
description The Gram-negative bacterium Xanthomonas citri subsp. citri (Xac) is the causal agent of citrus canker, disease that causes a significant economic impact on the orange production. Molecular studies involving pathosystems like Xac-citrus have been used to as an approach to understand the pathogenic processes. Therewith, the objective of this study was to investigate the expression of exsF and exsG Xac genes and the effect of its silencing in Xac pathogenicity in Rangpur lime (Citrus limonia Osbeck) leaves and also get the proteins coded by them and use it in initial tests of crystallization. The real-time PCR (qRT-PCR) technique was used in the analysis of gene expression.The in planta expression of exsF and exsG genes were evaluated in Xac isolated from Rangpur lime leaves collected at 48, 72 and 120 h after inoculation compared to Xac growing in NA culture. For the production of Xac double mutant having the ExsF and exsG genes silenced, the site-directed mutagenesis technique by PCR using the suicide vector pOK1 was used. For the production of ExsF and ExsG recombinant proteins, the E. coli heterologous expression in the pET SUMO expression vector was used. Finally, the initial crystallization trials were performed using commercial and non-commercial kits. The gene expression analysis showed that the exsF and exsG genes were induced about 10-fold more after 72 hours of Xac infection in Rangpur lime leaves, compared with the Xac grown in the culture medium. The functional assays performed with the Xac Δ3135/3136 double mutant showed that it was avirulent on Rangpur lime leaves, in contrast to the wild type strain Xac 306. Moreover, the mutation reduced the multiplication of the bacteria in planta. The mutation also affected the biofilm production, that was reduced in the mutated strain. Through the heterologous expression assays and protein purification it was possible to obtain only the ExsG protein, soluble and pure enough to be ...
publishDate 2015
dc.date.none.fl_str_mv 2015-02-06
2016-08-12T18:48:39Z
2016-08-12T18:48:39Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv COSTA, Maria Lucília Machado da. Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri. 2015. iv, 79 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.
http://hdl.handle.net/11449/142960
000867494
http://www.athena.biblioteca.unesp.br/exlibris/bd/cathedra/14-07-2016/000867494.pdf
33004102029P6
0147241723612464
identifier_str_mv COSTA, Maria Lucília Machado da. Análise funcional dos genes exsF e exsG de Xanthomonas citri subsp. citri. 2015. iv, 79 p. Tese (doutorado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.
000867494
33004102029P6
0147241723612464
url http://hdl.handle.net/11449/142960
http://www.athena.biblioteca.unesp.br/exlibris/bd/cathedra/14-07-2016/000867494.pdf
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv iv, 79 p. : il.
application/pdf
dc.publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.source.none.fl_str_mv Aleph
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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