Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
DOI: | 10.3390/v14112333 |
Texto Completo: | http://dx.doi.org/10.3390/v14112333 http://hdl.handle.net/11449/247862 |
Resumo: | Wastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries. |
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Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in BrazilepidemiologyqRT-PCRSARS-CoV-2wastewaterWastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries.Laboratory of Genomic Studies Institute of Biosciences Letters and Exact Sciences (IBILCE) São Paulo State University (UNESP), SPInstitute of Exact and Technological Sciences (ICET) University Feevale, RSSeMAE-Autonomous Municipal Water and Sewage Service, SPVirology Research Laboratory (LPV) Faculty of Medicine of São José do Rio Preto (FAMERP), SPApplied Preventive Veterinary Medicine Laboratory Department of Veterinary Medicine Faculty of Animal Science and Food Engineering (FZEA) University of São Paulo (USP), SPDepartment of Clinical Analysis School of Pharmaceutical Sciences São Paulo State University (UNESP), SPBiotechnology Institute São Paulo State University (UNESP), SPMolecular Microbiology Laboratory University Feevale, RSLaboratory of Genomic Studies Institute of Biosciences Letters and Exact Sciences (IBILCE) São Paulo State University (UNESP), SPDepartment of Clinical Analysis School of Pharmaceutical Sciences São Paulo State University (UNESP), SPBiotechnology Institute São Paulo State University (UNESP), SPUniversidade Estadual Paulista (UNESP)University FeevaleSeMAE-Autonomous Municipal Water and Sewage ServiceFaculty of Medicine of São José do Rio Preto (FAMERP)Universidade de São Paulo (USP)Martins, Renan Moura [UNESP]Carvalho, Tamara [UNESP]Bittar, Cintia [UNESP]Quevedo, Daniela MullerMiceli, Rafael NavaNogueira, Mauricio LacerdaFerreira, Helena LageCosta, Paulo Inácio [UNESP]Araújo, João Pessoa [UNESP]Spilki, Fernando RosadoRahal, Paula [UNESP]Calmon, Marilia Freitas [UNESP]2023-07-29T13:27:56Z2023-07-29T13:27:56Z2022-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/v14112333Viruses, v. 14, n. 11, 2022.1999-4915http://hdl.handle.net/11449/24786210.3390/v141123332-s2.0-85141753977Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengVirusesinfo:eu-repo/semantics/openAccess2024-06-21T15:18:57Zoai:repositorio.unesp.br:11449/247862Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:35:41.306486Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
title |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
spellingShingle |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil Martins, Renan Moura [UNESP] epidemiology qRT-PCR SARS-CoV-2 wastewater Martins, Renan Moura [UNESP] epidemiology qRT-PCR SARS-CoV-2 wastewater |
title_short |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
title_full |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
title_fullStr |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
title_full_unstemmed |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
title_sort |
Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil |
author |
Martins, Renan Moura [UNESP] |
author_facet |
Martins, Renan Moura [UNESP] Martins, Renan Moura [UNESP] Carvalho, Tamara [UNESP] Bittar, Cintia [UNESP] Quevedo, Daniela Muller Miceli, Rafael Nava Nogueira, Mauricio Lacerda Ferreira, Helena Lage Costa, Paulo Inácio [UNESP] Araújo, João Pessoa [UNESP] Spilki, Fernando Rosado Rahal, Paula [UNESP] Calmon, Marilia Freitas [UNESP] Carvalho, Tamara [UNESP] Bittar, Cintia [UNESP] Quevedo, Daniela Muller Miceli, Rafael Nava Nogueira, Mauricio Lacerda Ferreira, Helena Lage Costa, Paulo Inácio [UNESP] Araújo, João Pessoa [UNESP] Spilki, Fernando Rosado Rahal, Paula [UNESP] Calmon, Marilia Freitas [UNESP] |
author_role |
author |
author2 |
Carvalho, Tamara [UNESP] Bittar, Cintia [UNESP] Quevedo, Daniela Muller Miceli, Rafael Nava Nogueira, Mauricio Lacerda Ferreira, Helena Lage Costa, Paulo Inácio [UNESP] Araújo, João Pessoa [UNESP] Spilki, Fernando Rosado Rahal, Paula [UNESP] Calmon, Marilia Freitas [UNESP] |
author2_role |
author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) University Feevale SeMAE-Autonomous Municipal Water and Sewage Service Faculty of Medicine of São José do Rio Preto (FAMERP) Universidade de São Paulo (USP) |
dc.contributor.author.fl_str_mv |
Martins, Renan Moura [UNESP] Carvalho, Tamara [UNESP] Bittar, Cintia [UNESP] Quevedo, Daniela Muller Miceli, Rafael Nava Nogueira, Mauricio Lacerda Ferreira, Helena Lage Costa, Paulo Inácio [UNESP] Araújo, João Pessoa [UNESP] Spilki, Fernando Rosado Rahal, Paula [UNESP] Calmon, Marilia Freitas [UNESP] |
dc.subject.por.fl_str_mv |
epidemiology qRT-PCR SARS-CoV-2 wastewater |
topic |
epidemiology qRT-PCR SARS-CoV-2 wastewater |
description |
Wastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-11-01 2023-07-29T13:27:56Z 2023-07-29T13:27:56Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3390/v14112333 Viruses, v. 14, n. 11, 2022. 1999-4915 http://hdl.handle.net/11449/247862 10.3390/v14112333 2-s2.0-85141753977 |
url |
http://dx.doi.org/10.3390/v14112333 http://hdl.handle.net/11449/247862 |
identifier_str_mv |
Viruses, v. 14, n. 11, 2022. 1999-4915 10.3390/v14112333 2-s2.0-85141753977 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Viruses |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1822182350453211136 |
dc.identifier.doi.none.fl_str_mv |
10.3390/v14112333 |