A stomata classification and detection system in microscope images of maize cultivars

Detalhes bibliográficos
Autor(a) principal: Aono, Alexandre H.
Data de Publicação: 2021
Outros Autores: Nagai, James S., Dickel, Gabriella da S.M., Marinho, Rafaela C., de Oliveira, Paulo E.A.M., Papa, João P. [UNESP], Faria, Fabio A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0258679
http://hdl.handle.net/11449/229790
Resumo: Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural net-woks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses.
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spelling A stomata classification and detection system in microscope images of maize cultivarsPlant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural net-woks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Instituto de Ciência e Tecnologia Universidade Federal de São Paulo São José dos CamposInstituto de Biologia Universidade Federal de Uberlândia, UberlândiaDepartment of Computing São Paulo State University, BauruDepartment of Computing São Paulo State University, BauruCNPq: 2018/23908-1CNPq: 307066/2017-7CNPq: 408919/2016-7Universidade Federal de São Paulo (UNIFESP)Universidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (UNESP)Aono, Alexandre H.Nagai, James S.Dickel, Gabriella da S.M.Marinho, Rafaela C.de Oliveira, Paulo E.A.M.Papa, João P. [UNESP]Faria, Fabio A.2022-04-29T08:35:46Z2022-04-29T08:35:46Z2021-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pone.0258679PLoS ONE, v. 16, n. 10 October, 2021.1932-6203http://hdl.handle.net/11449/22979010.1371/journal.pone.02586792-s2.0-85117935727Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONEinfo:eu-repo/semantics/openAccess2024-04-23T16:10:49Zoai:repositorio.unesp.br:11449/229790Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-04-23T16:10:49Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv A stomata classification and detection system in microscope images of maize cultivars
title A stomata classification and detection system in microscope images of maize cultivars
spellingShingle A stomata classification and detection system in microscope images of maize cultivars
Aono, Alexandre H.
title_short A stomata classification and detection system in microscope images of maize cultivars
title_full A stomata classification and detection system in microscope images of maize cultivars
title_fullStr A stomata classification and detection system in microscope images of maize cultivars
title_full_unstemmed A stomata classification and detection system in microscope images of maize cultivars
title_sort A stomata classification and detection system in microscope images of maize cultivars
author Aono, Alexandre H.
author_facet Aono, Alexandre H.
Nagai, James S.
Dickel, Gabriella da S.M.
Marinho, Rafaela C.
de Oliveira, Paulo E.A.M.
Papa, João P. [UNESP]
Faria, Fabio A.
author_role author
author2 Nagai, James S.
Dickel, Gabriella da S.M.
Marinho, Rafaela C.
de Oliveira, Paulo E.A.M.
Papa, João P. [UNESP]
Faria, Fabio A.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de São Paulo (UNIFESP)
Universidade Federal de Uberlândia (UFU)
Universidade Estadual Paulista (UNESP)
dc.contributor.author.fl_str_mv Aono, Alexandre H.
Nagai, James S.
Dickel, Gabriella da S.M.
Marinho, Rafaela C.
de Oliveira, Paulo E.A.M.
Papa, João P. [UNESP]
Faria, Fabio A.
description Plant stomata are essential structures (pores) that control the exchange of gases between plant leaves and the atmosphere, and also they influence plant adaptation to climate through photosynthesis and transpiration stream. Many works in literature aim for a better understanding of these structures and their role in the evolution process and the behavior of plants. Although stomata studies in dicots species have advanced considerably in the past years, even there is not much knowledge about the stomata of cereal grasses. Due to the high morphological variation of stomata traits intra- and inter-species, detecting and classifying stomata automatically becomes challenging. For this reason, in this work, we propose a new system for automatic stomata classification and detection in microscope images for maize cultivars based on transfer learning strategy of different deep convolution neural net-woks (DCNN). Our performed experiments show that our system achieves an approximated accuracy of 97.1% in identifying stomata regions using classifiers based on deep learning features, which figures out as a nearly perfect classification system. As the stomata are responsible for several plant functionalities, this work represents an important advance for maize research, providing an accurate system in replacing the current manual task of categorizing these pores on microscope images. Furthermore, this system can also be a reference for studies using images from different cereal grasses.
publishDate 2021
dc.date.none.fl_str_mv 2021-10-01
2022-04-29T08:35:46Z
2022-04-29T08:35:46Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0258679
PLoS ONE, v. 16, n. 10 October, 2021.
1932-6203
http://hdl.handle.net/11449/229790
10.1371/journal.pone.0258679
2-s2.0-85117935727
url http://dx.doi.org/10.1371/journal.pone.0258679
http://hdl.handle.net/11449/229790
identifier_str_mv PLoS ONE, v. 16, n. 10 October, 2021.
1932-6203
10.1371/journal.pone.0258679
2-s2.0-85117935727
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS ONE
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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