Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1038/s41598-018-36578-8 http://hdl.handle.net/11449/188729 |
Resumo: | Antigen-antibody interaction is crucial in autoimmune disease pathogenesis, as multiple sclerosis and neuromyelitis optica. Given that, autoantibodies are essential biomolecules, of which the myelin oligodendrocyte glycoprotein (MOG) can figure as a target. Here we combined Molecular Dynamics (MD), Steered Molecular Dynamics (SMD), and Atomic Force Microscope (AFM) to detail MOG recognition by its specific antibody. The complex model consisted of the MOG external domain interacting with an experimental anti-MOG antibody from the Protein Data Bank (1PKQ). Computational data demonstrated thirteen MOG residues with a robust contribution to the antigen-antibody interaction. Comprising five of the thirteen anchor residues (ASP 102 , HIS 103 , SER 104 , TYR 105 , and GLN 106 ), the well-known MOG 92–106 peptide in complex with the anti-MOG was analysed by AFM and SMD. These analyses evidenced similar force values of 780 pN and 765 pN for computational and experimental MOG 92–106 and anti-MOG detachment, respectively. MOG 92–106 was responsible for 75% of the total force measured between MOG external domain and anti-MOG, holding the interaction with the antibody. The antigen-antibody binding was confirmed by Surface Plasmon Resonance (SPR) measurements. Combined approaches presented here can conveniently be adjusted to detail novel molecules in diseases research. This can optimize pre-clinical steps, guiding experiments, reducing costs, and animal model usage. |
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Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopesAntigen-antibody interaction is crucial in autoimmune disease pathogenesis, as multiple sclerosis and neuromyelitis optica. Given that, autoantibodies are essential biomolecules, of which the myelin oligodendrocyte glycoprotein (MOG) can figure as a target. Here we combined Molecular Dynamics (MD), Steered Molecular Dynamics (SMD), and Atomic Force Microscope (AFM) to detail MOG recognition by its specific antibody. The complex model consisted of the MOG external domain interacting with an experimental anti-MOG antibody from the Protein Data Bank (1PKQ). Computational data demonstrated thirteen MOG residues with a robust contribution to the antigen-antibody interaction. Comprising five of the thirteen anchor residues (ASP 102 , HIS 103 , SER 104 , TYR 105 , and GLN 106 ), the well-known MOG 92–106 peptide in complex with the anti-MOG was analysed by AFM and SMD. These analyses evidenced similar force values of 780 pN and 765 pN for computational and experimental MOG 92–106 and anti-MOG detachment, respectively. MOG 92–106 was responsible for 75% of the total force measured between MOG external domain and anti-MOG, holding the interaction with the antibody. The antigen-antibody binding was confirmed by Surface Plasmon Resonance (SPR) measurements. Combined approaches presented here can conveniently be adjusted to detail novel molecules in diseases research. This can optimize pre-clinical steps, guiding experiments, reducing costs, and animal model usage.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Nanoneurobiophysics Research Group Department of Physics Chemistry and Mathematics Federal University of São CarlosInstitute of Tropical Medicine of São Paulo University of São PauloDepartment of Neurology Psychology and Psychiatry UNESP - São Paulo State UniversityScience and Technology Centre for Sustainability Federal University of São CarlosRheabiotech Laboratory Research and DevelopmentInstitute of Chemistry Federal University of UberlândiaDepartment of Chemistry Federal University of São CarlosDepartment of Neurology Psychology and Psychiatry UNESP - São Paulo State UniversityFAPESP: 2012/50839-4FAPESP: 2013/09746-5FAPESP: 2014/12082-4FAPESP: 2014/15093-7FAPESP: 2014/21530-0FAPESP: 2014/26369-3FAPESP: 2015/05283-6FAPESP: 2015/06847-0FAPESP: 2016/19387-0CNPq: 305069/2016-0CNPq: 459768/2014-0Universidade Federal de São Carlos (UFSCar)Universidade de São Paulo (USP)Universidade Estadual Paulista (Unesp)Rheabiotech Laboratory Research and DevelopmentUniversidade Federal de Uberlândia (UFU)Ierich, Jéssica Cristiane MagalhãesBrum, Doralina Guimarães [UNESP]Moraes, Ariana de SouzaHiga, Akemi MartinsGarcia, Pâmela SotoMiyazaki, Celina MassumiFerreira, MarystelaPeroni, Luís AntonioOliveira, Guedmiller Souza deFranca, Eduardo de FariaFreitas, Luiz Carlos GomideLeite, Fabio Lima2019-10-06T16:17:22Z2019-10-06T16:17:22Z2019-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41598-018-36578-8Scientific Reports, v. 9, n. 1, 2019.2045-2322http://hdl.handle.net/11449/18872910.1038/s41598-018-36578-82-s2.0-85061565923Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Reportsinfo:eu-repo/semantics/openAccess2024-08-16T15:45:42Zoai:repositorio.unesp.br:11449/188729Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-16T15:45:42Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
title |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
spellingShingle |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes Ierich, Jéssica Cristiane Magalhães |
title_short |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
title_full |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
title_fullStr |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
title_full_unstemmed |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
title_sort |
Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes |
author |
Ierich, Jéssica Cristiane Magalhães |
author_facet |
Ierich, Jéssica Cristiane Magalhães Brum, Doralina Guimarães [UNESP] Moraes, Ariana de Souza Higa, Akemi Martins Garcia, Pâmela Soto Miyazaki, Celina Massumi Ferreira, Marystela Peroni, Luís Antonio Oliveira, Guedmiller Souza de Franca, Eduardo de Faria Freitas, Luiz Carlos Gomide Leite, Fabio Lima |
author_role |
author |
author2 |
Brum, Doralina Guimarães [UNESP] Moraes, Ariana de Souza Higa, Akemi Martins Garcia, Pâmela Soto Miyazaki, Celina Massumi Ferreira, Marystela Peroni, Luís Antonio Oliveira, Guedmiller Souza de Franca, Eduardo de Faria Freitas, Luiz Carlos Gomide Leite, Fabio Lima |
author2_role |
author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de São Carlos (UFSCar) Universidade de São Paulo (USP) Universidade Estadual Paulista (Unesp) Rheabiotech Laboratory Research and Development Universidade Federal de Uberlândia (UFU) |
dc.contributor.author.fl_str_mv |
Ierich, Jéssica Cristiane Magalhães Brum, Doralina Guimarães [UNESP] Moraes, Ariana de Souza Higa, Akemi Martins Garcia, Pâmela Soto Miyazaki, Celina Massumi Ferreira, Marystela Peroni, Luís Antonio Oliveira, Guedmiller Souza de Franca, Eduardo de Faria Freitas, Luiz Carlos Gomide Leite, Fabio Lima |
description |
Antigen-antibody interaction is crucial in autoimmune disease pathogenesis, as multiple sclerosis and neuromyelitis optica. Given that, autoantibodies are essential biomolecules, of which the myelin oligodendrocyte glycoprotein (MOG) can figure as a target. Here we combined Molecular Dynamics (MD), Steered Molecular Dynamics (SMD), and Atomic Force Microscope (AFM) to detail MOG recognition by its specific antibody. The complex model consisted of the MOG external domain interacting with an experimental anti-MOG antibody from the Protein Data Bank (1PKQ). Computational data demonstrated thirteen MOG residues with a robust contribution to the antigen-antibody interaction. Comprising five of the thirteen anchor residues (ASP 102 , HIS 103 , SER 104 , TYR 105 , and GLN 106 ), the well-known MOG 92–106 peptide in complex with the anti-MOG was analysed by AFM and SMD. These analyses evidenced similar force values of 780 pN and 765 pN for computational and experimental MOG 92–106 and anti-MOG detachment, respectively. MOG 92–106 was responsible for 75% of the total force measured between MOG external domain and anti-MOG, holding the interaction with the antibody. The antigen-antibody binding was confirmed by Surface Plasmon Resonance (SPR) measurements. Combined approaches presented here can conveniently be adjusted to detail novel molecules in diseases research. This can optimize pre-clinical steps, guiding experiments, reducing costs, and animal model usage. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-10-06T16:17:22Z 2019-10-06T16:17:22Z 2019-12-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1038/s41598-018-36578-8 Scientific Reports, v. 9, n. 1, 2019. 2045-2322 http://hdl.handle.net/11449/188729 10.1038/s41598-018-36578-8 2-s2.0-85061565923 |
url |
http://dx.doi.org/10.1038/s41598-018-36578-8 http://hdl.handle.net/11449/188729 |
identifier_str_mv |
Scientific Reports, v. 9, n. 1, 2019. 2045-2322 10.1038/s41598-018-36578-8 2-s2.0-85061565923 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientific Reports |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808128153459097600 |