Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)

Detalhes bibliográficos
Autor(a) principal: Sanches, Paulo R.S. [UNESP]
Data de Publicação: 2021
Outros Autores: Charlie-Silva, Ives, Braz, Helyson L.B., Bittar, Cíntia [UNESP], Freitas Calmon, Marilia [UNESP], Rahal, Paula [UNESP], Cilli, Eduardo M. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
DOI: 10.1016/j.jve.2021.100054
Texto Completo: http://dx.doi.org/10.1016/j.jve.2021.100054
http://hdl.handle.net/11449/233558
Resumo: New variants of SARS-CoV-2 Alpha (B.1.1.7); Beta (B.1.351) Gamma (P.1) and Delta (B.1.617.2) quickly spread in the UK, South Africa, Brazil and India, respectively. To address whether mutations in SARS-CoV-2 RBD spike protein could affect virus infectivity, peptides containing RBD amino acids mutations have been constructed and interacted with human ACE2 by computational methods. Our results suggest that mutations in RBD amino acids K417, E484, L452, T478 and N501 are expressively increasing the affinity of this protein with human angiotensin-converting enzyme 2 (ACE2), consequently, variants Alpha (B.1.1.7), Beta (B1.351), Gamma (P.1) and Delta (B.1.617.2) could be more infective in human cells compared with SARS-CoV-2 isolated in Wuhan-2019 and the Gamma and Delta variants could be the most infective among them.
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spelling Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)Human ACE2New variantsReceptor binding domainSARS-CoV-2Spike proteinNew variants of SARS-CoV-2 Alpha (B.1.1.7); Beta (B.1.351) Gamma (P.1) and Delta (B.1.617.2) quickly spread in the UK, South Africa, Brazil and India, respectively. To address whether mutations in SARS-CoV-2 RBD spike protein could affect virus infectivity, peptides containing RBD amino acids mutations have been constructed and interacted with human ACE2 by computational methods. Our results suggest that mutations in RBD amino acids K417, E484, L452, T478 and N501 are expressively increasing the affinity of this protein with human angiotensin-converting enzyme 2 (ACE2), consequently, variants Alpha (B.1.1.7), Beta (B1.351), Gamma (P.1) and Delta (B.1.617.2) could be more infective in human cells compared with SARS-CoV-2 isolated in Wuhan-2019 and the Gamma and Delta variants could be the most infective among them.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Institute of Chemistry UNESP - São Paulo State UniversityInstitute of Biomedical Sciences Department of Pharmacology University of São PauloDepartment of Morphology School of Medicine Federal University of CearáInstitute of Bioscience Language and Exact Science UNESP - São Paulo State University São José Do Rio PretoInstitute of Chemistry UNESP - São Paulo State UniversityInstitute of Bioscience Language and Exact Science UNESP - São Paulo State University São José Do Rio PretoFAPESP: FAPESP 20/05761–3FAPESP: FAPESP 20/12519–4Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Federal University of CearáSanches, Paulo R.S. [UNESP]Charlie-Silva, IvesBraz, Helyson L.B.Bittar, Cíntia [UNESP]Freitas Calmon, Marilia [UNESP]Rahal, Paula [UNESP]Cilli, Eduardo M. [UNESP]2022-05-01T09:30:34Z2022-05-01T09:30:34Z2021-09-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.jve.2021.100054Journal of Virus Eradication, v. 7, n. 3, 2021.2055-66592055-6640http://hdl.handle.net/11449/23355810.1016/j.jve.2021.1000542-s2.0-85115260703Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Virus Eradicationinfo:eu-repo/semantics/openAccess2022-05-01T09:30:34Zoai:repositorio.unesp.br:11449/233558Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:28:32.831604Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
title Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
spellingShingle Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
Sanches, Paulo R.S. [UNESP]
Human ACE2
New variants
Receptor binding domain
SARS-CoV-2
Spike protein
Sanches, Paulo R.S. [UNESP]
Human ACE2
New variants
Receptor binding domain
SARS-CoV-2
Spike protein
title_short Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
title_full Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
title_fullStr Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
title_full_unstemmed Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
title_sort Recent advances in SARS-CoV-2 Spike protein and RBD mutations comparison between new variants Alpha (B.1.1.7, United Kingdom), Beta (B.1.351, South Africa), Gamma (P.1, Brazil) and Delta (B.1.617.2, India)
author Sanches, Paulo R.S. [UNESP]
author_facet Sanches, Paulo R.S. [UNESP]
Sanches, Paulo R.S. [UNESP]
Charlie-Silva, Ives
Braz, Helyson L.B.
Bittar, Cíntia [UNESP]
Freitas Calmon, Marilia [UNESP]
Rahal, Paula [UNESP]
Cilli, Eduardo M. [UNESP]
Charlie-Silva, Ives
Braz, Helyson L.B.
Bittar, Cíntia [UNESP]
Freitas Calmon, Marilia [UNESP]
Rahal, Paula [UNESP]
Cilli, Eduardo M. [UNESP]
author_role author
author2 Charlie-Silva, Ives
Braz, Helyson L.B.
Bittar, Cíntia [UNESP]
Freitas Calmon, Marilia [UNESP]
Rahal, Paula [UNESP]
Cilli, Eduardo M. [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
Federal University of Ceará
dc.contributor.author.fl_str_mv Sanches, Paulo R.S. [UNESP]
Charlie-Silva, Ives
Braz, Helyson L.B.
Bittar, Cíntia [UNESP]
Freitas Calmon, Marilia [UNESP]
Rahal, Paula [UNESP]
Cilli, Eduardo M. [UNESP]
dc.subject.por.fl_str_mv Human ACE2
New variants
Receptor binding domain
SARS-CoV-2
Spike protein
topic Human ACE2
New variants
Receptor binding domain
SARS-CoV-2
Spike protein
description New variants of SARS-CoV-2 Alpha (B.1.1.7); Beta (B.1.351) Gamma (P.1) and Delta (B.1.617.2) quickly spread in the UK, South Africa, Brazil and India, respectively. To address whether mutations in SARS-CoV-2 RBD spike protein could affect virus infectivity, peptides containing RBD amino acids mutations have been constructed and interacted with human ACE2 by computational methods. Our results suggest that mutations in RBD amino acids K417, E484, L452, T478 and N501 are expressively increasing the affinity of this protein with human angiotensin-converting enzyme 2 (ACE2), consequently, variants Alpha (B.1.1.7), Beta (B1.351), Gamma (P.1) and Delta (B.1.617.2) could be more infective in human cells compared with SARS-CoV-2 isolated in Wuhan-2019 and the Gamma and Delta variants could be the most infective among them.
publishDate 2021
dc.date.none.fl_str_mv 2021-09-01
2022-05-01T09:30:34Z
2022-05-01T09:30:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.jve.2021.100054
Journal of Virus Eradication, v. 7, n. 3, 2021.
2055-6659
2055-6640
http://hdl.handle.net/11449/233558
10.1016/j.jve.2021.100054
2-s2.0-85115260703
url http://dx.doi.org/10.1016/j.jve.2021.100054
http://hdl.handle.net/11449/233558
identifier_str_mv Journal of Virus Eradication, v. 7, n. 3, 2021.
2055-6659
2055-6640
10.1016/j.jve.2021.100054
2-s2.0-85115260703
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Virus Eradication
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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dc.identifier.doi.none.fl_str_mv 10.1016/j.jve.2021.100054