Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)

Detalhes bibliográficos
Autor(a) principal: Milhomem, Susana S. R.
Data de Publicação: 2013
Outros Autores: Scacchetti, Priscilla C. [UNESP], Pieczarka, Julio C., Ferguson-Smith, Malcolm A., Pansonato-Alves, José C. [UNESP], O'Brien, Patricia C. M., Foresti, Fausto [UNESP], Nagamachi, Cleusa Y.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0055608
http://hdl.handle.net/11449/74563
Resumo: Gymnotus (Gymnotiformes, Gymnotidae) is the most diverse known Neotropical electric knife fish genus. Cytogenetic studies in Gymnotus demonstrate a huge karyotypic diversity for this genus, with diploid numbers ranging from 34 to 54. The NOR are also variable in this genus, with both single and multiple NORs described. A common interpretation is that the single NOR pair is a primitive trait while multiple NORs are derivative. However this hypothesis has never been fully tested. In this report we checked if the NOR-bearing chromosome and the rDNA site are homeologous in different species of the genus Gymnotus: G. carapo (2n = 40, 42, 54), G. mamiraua (2n = 54), G. arapaima (2n = 44), G. sylvius (2n = 40), G. inaequilabiatus (2n = 54) and G. capanema (2n = 34), from the monophyletic group G. carapo (Gymnotidae-Gymnotiformes), as well as G. jonasi (2n = 52), belonging to the G1 group. They were analyzed with Fluorescence in situ hybridization (FISH) using 18S rDNA and whole chromosome probes of the NOR-bearing chromosome 20 (GCA20) of G. carapo (cytotype 2n = 42), obtained by Fluorescence Activated Cell Sorting. All species of the monophyletic G. carapo group show the NOR in the same single pair, confirmed by hybridization with CGA20 whole chromosome probe. In G. jonasi the NORs are multiple, and located on pairs 9, 10 and 11. In G. jonasi the GCA20 chromosome probe paints the distal half of the long arm of pair 7, which is not a NOR-bearing chromosome. Thus these rDNA sequences are not always in the homeologous chromosomes in different species thus giving no support to the hypothesis that single NOR pairs are primitive traits while multiple NORs are derived. The separation of groups of species in the genus Gymnotus proposed by phylogenies with morphologic and molecular data is supported by our cytogenetic data. © 2013 Milhomem et al.
id UNSP_dc779acf8530f6798c6e8e7dc60dab53
oai_identifier_str oai:repositorio.unesp.br:11449/74563
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)ribosome DNAchromosomal localizationchromosome analysischromosome NORcontrolled studycytotypeDNA determinationDNA sequencefishfluorescence activated cell sortingfluorescence in situ hybridizationGymnotus arapaimaGymnotus capanemaGymnotus carapoGymnotus inaequilabiatusGymnotus jonasiGymnotus mamirauaGymnotus sylviusmolecular probenonhumanspecies differenceAnimalsChromosomesDNA ProbesDNA, RibosomalGymnotiformesIn Situ Hybridization, FluorescenceNucleolus Organizer RegionPhylogenySpecies SpecificityGymnotus (Gymnotiformes, Gymnotidae) is the most diverse known Neotropical electric knife fish genus. Cytogenetic studies in Gymnotus demonstrate a huge karyotypic diversity for this genus, with diploid numbers ranging from 34 to 54. The NOR are also variable in this genus, with both single and multiple NORs described. A common interpretation is that the single NOR pair is a primitive trait while multiple NORs are derivative. However this hypothesis has never been fully tested. In this report we checked if the NOR-bearing chromosome and the rDNA site are homeologous in different species of the genus Gymnotus: G. carapo (2n = 40, 42, 54), G. mamiraua (2n = 54), G. arapaima (2n = 44), G. sylvius (2n = 40), G. inaequilabiatus (2n = 54) and G. capanema (2n = 34), from the monophyletic group G. carapo (Gymnotidae-Gymnotiformes), as well as G. jonasi (2n = 52), belonging to the G1 group. They were analyzed with Fluorescence in situ hybridization (FISH) using 18S rDNA and whole chromosome probes of the NOR-bearing chromosome 20 (GCA20) of G. carapo (cytotype 2n = 42), obtained by Fluorescence Activated Cell Sorting. All species of the monophyletic G. carapo group show the NOR in the same single pair, confirmed by hybridization with CGA20 whole chromosome probe. In G. jonasi the NORs are multiple, and located on pairs 9, 10 and 11. In G. jonasi the GCA20 chromosome probe paints the distal half of the long arm of pair 7, which is not a NOR-bearing chromosome. Thus these rDNA sequences are not always in the homeologous chromosomes in different species thus giving no support to the hypothesis that single NOR pairs are primitive traits while multiple NORs are derived. The separation of groups of species in the genus Gymnotus proposed by phylogenies with morphologic and molecular data is supported by our cytogenetic data. © 2013 Milhomem et al.Laboratório de Citogenética Instituto de Ciências Biológicas Universidade Federal do Pará, Belém, ParáInstituto de Biociências de Botucatu Departamento de Morfologia Universidade Estadual Paulista, Botucatu, São PauloCambridge Resource Centre for Comparative Genomics Department of Veterinary Medicine University of Cambridge, CambridgeInstituto de Biociências de Botucatu Departamento de Morfologia Universidade Estadual Paulista, Botucatu, São PauloUniversidade Federal do Pará (UFPA)Universidade Estadual Paulista (Unesp)University of CambridgeMilhomem, Susana S. R.Scacchetti, Priscilla C. [UNESP]Pieczarka, Julio C.Ferguson-Smith, Malcolm A.Pansonato-Alves, José C. [UNESP]O'Brien, Patricia C. M.Foresti, Fausto [UNESP]Nagamachi, Cleusa Y.2014-05-27T11:28:21Z2014-05-27T11:28:21Z2013-02-06info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1371/journal.pone.0055608PLoS ONE, v. 8, n. 2, 2013.1932-6203http://hdl.handle.net/11449/7456310.1371/journal.pone.0055608WOS:0003151534001232-s2.0-848735316142-s2.0-84873531614.pdf0804793944846367Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLOS ONE2.7661,164info:eu-repo/semantics/openAccess2023-11-21T06:10:53Zoai:repositorio.unesp.br:11449/74563Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-21T06:10:53Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
title Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
spellingShingle Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
Milhomem, Susana S. R.
ribosome DNA
chromosomal localization
chromosome analysis
chromosome NOR
controlled study
cytotype
DNA determination
DNA sequence
fish
fluorescence activated cell sorting
fluorescence in situ hybridization
Gymnotus arapaima
Gymnotus capanema
Gymnotus carapo
Gymnotus inaequilabiatus
Gymnotus jonasi
Gymnotus mamiraua
Gymnotus sylvius
molecular probe
nonhuman
species difference
Animals
Chromosomes
DNA Probes
DNA, Ribosomal
Gymnotiformes
In Situ Hybridization, Fluorescence
Nucleolus Organizer Region
Phylogeny
Species Specificity
title_short Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
title_full Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
title_fullStr Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
title_full_unstemmed Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
title_sort Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)
author Milhomem, Susana S. R.
author_facet Milhomem, Susana S. R.
Scacchetti, Priscilla C. [UNESP]
Pieczarka, Julio C.
Ferguson-Smith, Malcolm A.
Pansonato-Alves, José C. [UNESP]
O'Brien, Patricia C. M.
Foresti, Fausto [UNESP]
Nagamachi, Cleusa Y.
author_role author
author2 Scacchetti, Priscilla C. [UNESP]
Pieczarka, Julio C.
Ferguson-Smith, Malcolm A.
Pansonato-Alves, José C. [UNESP]
O'Brien, Patricia C. M.
Foresti, Fausto [UNESP]
Nagamachi, Cleusa Y.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Pará (UFPA)
Universidade Estadual Paulista (Unesp)
University of Cambridge
dc.contributor.author.fl_str_mv Milhomem, Susana S. R.
Scacchetti, Priscilla C. [UNESP]
Pieczarka, Julio C.
Ferguson-Smith, Malcolm A.
Pansonato-Alves, José C. [UNESP]
O'Brien, Patricia C. M.
Foresti, Fausto [UNESP]
Nagamachi, Cleusa Y.
dc.subject.por.fl_str_mv ribosome DNA
chromosomal localization
chromosome analysis
chromosome NOR
controlled study
cytotype
DNA determination
DNA sequence
fish
fluorescence activated cell sorting
fluorescence in situ hybridization
Gymnotus arapaima
Gymnotus capanema
Gymnotus carapo
Gymnotus inaequilabiatus
Gymnotus jonasi
Gymnotus mamiraua
Gymnotus sylvius
molecular probe
nonhuman
species difference
Animals
Chromosomes
DNA Probes
DNA, Ribosomal
Gymnotiformes
In Situ Hybridization, Fluorescence
Nucleolus Organizer Region
Phylogeny
Species Specificity
topic ribosome DNA
chromosomal localization
chromosome analysis
chromosome NOR
controlled study
cytotype
DNA determination
DNA sequence
fish
fluorescence activated cell sorting
fluorescence in situ hybridization
Gymnotus arapaima
Gymnotus capanema
Gymnotus carapo
Gymnotus inaequilabiatus
Gymnotus jonasi
Gymnotus mamiraua
Gymnotus sylvius
molecular probe
nonhuman
species difference
Animals
Chromosomes
DNA Probes
DNA, Ribosomal
Gymnotiformes
In Situ Hybridization, Fluorescence
Nucleolus Organizer Region
Phylogeny
Species Specificity
description Gymnotus (Gymnotiformes, Gymnotidae) is the most diverse known Neotropical electric knife fish genus. Cytogenetic studies in Gymnotus demonstrate a huge karyotypic diversity for this genus, with diploid numbers ranging from 34 to 54. The NOR are also variable in this genus, with both single and multiple NORs described. A common interpretation is that the single NOR pair is a primitive trait while multiple NORs are derivative. However this hypothesis has never been fully tested. In this report we checked if the NOR-bearing chromosome and the rDNA site are homeologous in different species of the genus Gymnotus: G. carapo (2n = 40, 42, 54), G. mamiraua (2n = 54), G. arapaima (2n = 44), G. sylvius (2n = 40), G. inaequilabiatus (2n = 54) and G. capanema (2n = 34), from the monophyletic group G. carapo (Gymnotidae-Gymnotiformes), as well as G. jonasi (2n = 52), belonging to the G1 group. They were analyzed with Fluorescence in situ hybridization (FISH) using 18S rDNA and whole chromosome probes of the NOR-bearing chromosome 20 (GCA20) of G. carapo (cytotype 2n = 42), obtained by Fluorescence Activated Cell Sorting. All species of the monophyletic G. carapo group show the NOR in the same single pair, confirmed by hybridization with CGA20 whole chromosome probe. In G. jonasi the NORs are multiple, and located on pairs 9, 10 and 11. In G. jonasi the GCA20 chromosome probe paints the distal half of the long arm of pair 7, which is not a NOR-bearing chromosome. Thus these rDNA sequences are not always in the homeologous chromosomes in different species thus giving no support to the hypothesis that single NOR pairs are primitive traits while multiple NORs are derived. The separation of groups of species in the genus Gymnotus proposed by phylogenies with morphologic and molecular data is supported by our cytogenetic data. © 2013 Milhomem et al.
publishDate 2013
dc.date.none.fl_str_mv 2013-02-06
2014-05-27T11:28:21Z
2014-05-27T11:28:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0055608
PLoS ONE, v. 8, n. 2, 2013.
1932-6203
http://hdl.handle.net/11449/74563
10.1371/journal.pone.0055608
WOS:000315153400123
2-s2.0-84873531614
2-s2.0-84873531614.pdf
0804793944846367
url http://dx.doi.org/10.1371/journal.pone.0055608
http://hdl.handle.net/11449/74563
identifier_str_mv PLoS ONE, v. 8, n. 2, 2013.
1932-6203
10.1371/journal.pone.0055608
WOS:000315153400123
2-s2.0-84873531614
2-s2.0-84873531614.pdf
0804793944846367
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLOS ONE
2.766
1,164
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1797789773706821632