Algorithms for automatic segmentation of bovine embryos produced
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://iopscience.iop.org/1742-6596/490/1/012125/ http://hdl.handle.net/11449/122439 |
Resumo: | In vitro production has been employed in bovine embryos and quantification of lipids is fundamental to understand the metabolism of these embryos. This paper presents a unsupervised segmentation method for histological images of bovine embryos. In this method, the anisotropic filter was used in the differents RGB components. After pre-processing step, the thresholding technique based on maximum entropy was applied to separate lipid droplets in the histological slides in different stages: early cleavage, morula and blastocyst. In the postprocessing step, false positives are removed using the connected components technique that identify regions with excess of dye near pellucid zone. The proposed segmentation method was applied in 30 histological images of bovine embryos. Experiments were performed with the images and statistical measures of sensitivity, specificity and accuracy were calculated based on reference images (gold standard). The value of accuracy of the proposed method was 96% with standard deviation of 3%. |
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Repositório Institucional da UNESP |
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Algorithms for automatic segmentation of bovine embryos producedIn vitro production has been employed in bovine embryos and quantification of lipids is fundamental to understand the metabolism of these embryos. This paper presents a unsupervised segmentation method for histological images of bovine embryos. In this method, the anisotropic filter was used in the differents RGB components. After pre-processing step, the thresholding technique based on maximum entropy was applied to separate lipid droplets in the histological slides in different stages: early cleavage, morula and blastocyst. In the postprocessing step, false positives are removed using the connected components technique that identify regions with excess of dye near pellucid zone. The proposed segmentation method was applied in 30 histological images of bovine embryos. Experiments were performed with the images and statistical measures of sensitivity, specificity and accuracy were calculated based on reference images (gold standard). The value of accuracy of the proposed method was 96% with standard deviation of 3%.Universidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio Preto, São José do Rio Preto, Rua Cristóvão Colombo, 2265, Jardim Nazareth, CEP 15054000, SP, BrasilUniversidade Estadual Paulista Júlio de Mesquita Filho, Departamento de Ciência da Computação e Estatística, Instituto de Biociências Letras e Ciências Exatas de São José do Rio PretoUniversidade Federal do ABC (UFABC)Universidade Federal de Uberlândia (UFU)Universidade Estadual Paulista (Unesp)Melo, D. H.Nascimento, Marcelo Zanchetta doOliveira, Domingos Lucas Latorre deNeves, Leandro Alves [UNESP]Annes, K.2015-04-27T11:55:45Z2015-04-27T11:55:45Z2014info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-4application/pdfhttp://iopscience.iop.org/1742-6596/490/1/012125/Journal of Physics. Conference Series, v. 490, 2014.1742-6596http://hdl.handle.net/11449/12243910.1088/1742-6596/490/1/012125ISSN1742-6596-2013-490-012125.pdf21390538148793120000-0001-8580-7054Currículo Lattesreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Physics. Conference Series0,241info:eu-repo/semantics/openAccess2023-11-19T06:08:57Zoai:repositorio.unesp.br:11449/122439Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:06:35.094614Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Algorithms for automatic segmentation of bovine embryos produced |
title |
Algorithms for automatic segmentation of bovine embryos produced |
spellingShingle |
Algorithms for automatic segmentation of bovine embryos produced Melo, D. H. |
title_short |
Algorithms for automatic segmentation of bovine embryos produced |
title_full |
Algorithms for automatic segmentation of bovine embryos produced |
title_fullStr |
Algorithms for automatic segmentation of bovine embryos produced |
title_full_unstemmed |
Algorithms for automatic segmentation of bovine embryos produced |
title_sort |
Algorithms for automatic segmentation of bovine embryos produced |
author |
Melo, D. H. |
author_facet |
Melo, D. H. Nascimento, Marcelo Zanchetta do Oliveira, Domingos Lucas Latorre de Neves, Leandro Alves [UNESP] Annes, K. |
author_role |
author |
author2 |
Nascimento, Marcelo Zanchetta do Oliveira, Domingos Lucas Latorre de Neves, Leandro Alves [UNESP] Annes, K. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do ABC (UFABC) Universidade Federal de Uberlândia (UFU) Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Melo, D. H. Nascimento, Marcelo Zanchetta do Oliveira, Domingos Lucas Latorre de Neves, Leandro Alves [UNESP] Annes, K. |
description |
In vitro production has been employed in bovine embryos and quantification of lipids is fundamental to understand the metabolism of these embryos. This paper presents a unsupervised segmentation method for histological images of bovine embryos. In this method, the anisotropic filter was used in the differents RGB components. After pre-processing step, the thresholding technique based on maximum entropy was applied to separate lipid droplets in the histological slides in different stages: early cleavage, morula and blastocyst. In the postprocessing step, false positives are removed using the connected components technique that identify regions with excess of dye near pellucid zone. The proposed segmentation method was applied in 30 histological images of bovine embryos. Experiments were performed with the images and statistical measures of sensitivity, specificity and accuracy were calculated based on reference images (gold standard). The value of accuracy of the proposed method was 96% with standard deviation of 3%. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014 2015-04-27T11:55:45Z 2015-04-27T11:55:45Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://iopscience.iop.org/1742-6596/490/1/012125/ Journal of Physics. Conference Series, v. 490, 2014. 1742-6596 http://hdl.handle.net/11449/122439 10.1088/1742-6596/490/1/012125 ISSN1742-6596-2013-490-012125.pdf 2139053814879312 0000-0001-8580-7054 |
url |
http://iopscience.iop.org/1742-6596/490/1/012125/ http://hdl.handle.net/11449/122439 |
identifier_str_mv |
Journal of Physics. Conference Series, v. 490, 2014. 1742-6596 10.1088/1742-6596/490/1/012125 ISSN1742-6596-2013-490-012125.pdf 2139053814879312 0000-0001-8580-7054 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Physics. Conference Series 0,241 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1-4 application/pdf |
dc.source.none.fl_str_mv |
Currículo Lattes reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128896452788224 |