Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1080/24701394.2019.1597071 http://hdl.handle.net/11449/187575 |
Resumo: | Although several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes. |
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Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA toolAncistriniCatfishdistance treemitochondrial DNAtaxonomyAlthough several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes.Institute of Biosciences São Paulo State University (Unesp)Mato Grosso Federal Institute (IFMT)Institute of Biosciences Mato Grosso Federal UniversityDepartment of Biology Center for Research in Limnology Ichthyology and Aquaculture (Nupélia) Maringá State UniversityInstitute of Biosciences São Paulo State University (Unesp)Universidade Estadual Paulista (Unesp)Mato Grosso Federal Institute (IFMT)Mato Grosso Federal UniversityMaringá State Universityde Borba, Rafael Splendore [UNESP]Mariotto, SandraCentofante, LianoHenrique Zawadzki, ClaudioPasquali Parise-Maltempi, Patricia [UNESP]2019-10-06T15:40:39Z2019-10-06T15:40:39Z2019-05-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article602-608http://dx.doi.org/10.1080/24701394.2019.1597071Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019.2470-14082470-1394http://hdl.handle.net/11449/18757510.1080/24701394.2019.15970712-s2.0-85064525109Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysisinfo:eu-repo/semantics/openAccess2021-10-23T20:19:26Zoai:repositorio.unesp.br:11449/187575Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:47:55.873152Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
title |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
spellingShingle |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool de Borba, Rafael Splendore [UNESP] Ancistrini Catfish distance tree mitochondrial DNA taxonomy |
title_short |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
title_full |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
title_fullStr |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
title_full_unstemmed |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
title_sort |
Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool |
author |
de Borba, Rafael Splendore [UNESP] |
author_facet |
de Borba, Rafael Splendore [UNESP] Mariotto, Sandra Centofante, Liano Henrique Zawadzki, Claudio Pasquali Parise-Maltempi, Patricia [UNESP] |
author_role |
author |
author2 |
Mariotto, Sandra Centofante, Liano Henrique Zawadzki, Claudio Pasquali Parise-Maltempi, Patricia [UNESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Mato Grosso Federal Institute (IFMT) Mato Grosso Federal University Maringá State University |
dc.contributor.author.fl_str_mv |
de Borba, Rafael Splendore [UNESP] Mariotto, Sandra Centofante, Liano Henrique Zawadzki, Claudio Pasquali Parise-Maltempi, Patricia [UNESP] |
dc.subject.por.fl_str_mv |
Ancistrini Catfish distance tree mitochondrial DNA taxonomy |
topic |
Ancistrini Catfish distance tree mitochondrial DNA taxonomy |
description |
Although several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-10-06T15:40:39Z 2019-10-06T15:40:39Z 2019-05-19 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1080/24701394.2019.1597071 Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019. 2470-1408 2470-1394 http://hdl.handle.net/11449/187575 10.1080/24701394.2019.1597071 2-s2.0-85064525109 |
url |
http://dx.doi.org/10.1080/24701394.2019.1597071 http://hdl.handle.net/11449/187575 |
identifier_str_mv |
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019. 2470-1408 2470-1394 10.1080/24701394.2019.1597071 2-s2.0-85064525109 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
602-608 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128980678606848 |