Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool

Detalhes bibliográficos
Autor(a) principal: de Borba, Rafael Splendore [UNESP]
Data de Publicação: 2019
Outros Autores: Mariotto, Sandra, Centofante, Liano, Henrique Zawadzki, Claudio, Pasquali Parise-Maltempi, Patricia [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1080/24701394.2019.1597071
http://hdl.handle.net/11449/187575
Resumo: Although several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes.
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spelling Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA toolAncistriniCatfishdistance treemitochondrial DNAtaxonomyAlthough several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes.Institute of Biosciences São Paulo State University (Unesp)Mato Grosso Federal Institute (IFMT)Institute of Biosciences Mato Grosso Federal UniversityDepartment of Biology Center for Research in Limnology Ichthyology and Aquaculture (Nupélia) Maringá State UniversityInstitute of Biosciences São Paulo State University (Unesp)Universidade Estadual Paulista (Unesp)Mato Grosso Federal Institute (IFMT)Mato Grosso Federal UniversityMaringá State Universityde Borba, Rafael Splendore [UNESP]Mariotto, SandraCentofante, LianoHenrique Zawadzki, ClaudioPasquali Parise-Maltempi, Patricia [UNESP]2019-10-06T15:40:39Z2019-10-06T15:40:39Z2019-05-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article602-608http://dx.doi.org/10.1080/24701394.2019.1597071Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019.2470-14082470-1394http://hdl.handle.net/11449/18757510.1080/24701394.2019.15970712-s2.0-85064525109Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysisinfo:eu-repo/semantics/openAccess2021-10-23T20:19:26Zoai:repositorio.unesp.br:11449/187575Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:47:55.873152Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
title Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
spellingShingle Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
de Borba, Rafael Splendore [UNESP]
Ancistrini
Catfish
distance tree
mitochondrial DNA
taxonomy
title_short Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
title_full Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
title_fullStr Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
title_full_unstemmed Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
title_sort Molecular discrimination of Ancistrus lineages (Siluriformes: Loricariidae) using barcode DNA tool
author de Borba, Rafael Splendore [UNESP]
author_facet de Borba, Rafael Splendore [UNESP]
Mariotto, Sandra
Centofante, Liano
Henrique Zawadzki, Claudio
Pasquali Parise-Maltempi, Patricia [UNESP]
author_role author
author2 Mariotto, Sandra
Centofante, Liano
Henrique Zawadzki, Claudio
Pasquali Parise-Maltempi, Patricia [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Mato Grosso Federal Institute (IFMT)
Mato Grosso Federal University
Maringá State University
dc.contributor.author.fl_str_mv de Borba, Rafael Splendore [UNESP]
Mariotto, Sandra
Centofante, Liano
Henrique Zawadzki, Claudio
Pasquali Parise-Maltempi, Patricia [UNESP]
dc.subject.por.fl_str_mv Ancistrini
Catfish
distance tree
mitochondrial DNA
taxonomy
topic Ancistrini
Catfish
distance tree
mitochondrial DNA
taxonomy
description Although several species of Ancistrus have been described from the Amazon and Paraguay river basins in the states of Amazonas and Mato Grosso, Brazil, the taxonomic status of most specimens from these regions remains doubtful. In the present work, cytogenetic and molecular data were used to discriminate and isolate unexpected Ancistrus lineages from the Amazon and Paraguay basins. For that, it was used DNA barcoding based on mitochondrial Cytochrome Oxidase Subunit I (COI) gene and cytogenic data to perform such molecular discrimination. The analyzed sequences had 669 bp, of which 171 bp were conserved and 491 bp were variable. The Neighbor-joining and Bayesian analysis revealed 21 distinct groups in topology. The genetic distances within each group was 0.4%, 21 times smaller than the mean distance observed among groups, which was 8.4%. These values showed seven distinct lineages of Ancistrus from the studied points of the Amazon basin and eight lineages from the Paraguay basin points. Our results illustrate the efficiency of this technique for the discrimination of the Ancistrus lineages once it indicates the occurrence of cryptic species in these regions, which cannot yet be identified either with just chromosomal or morphological analyzes.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T15:40:39Z
2019-10-06T15:40:39Z
2019-05-19
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1080/24701394.2019.1597071
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019.
2470-1408
2470-1394
http://hdl.handle.net/11449/187575
10.1080/24701394.2019.1597071
2-s2.0-85064525109
url http://dx.doi.org/10.1080/24701394.2019.1597071
http://hdl.handle.net/11449/187575
identifier_str_mv Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 30, n. 4, p. 602-608, 2019.
2470-1408
2470-1394
10.1080/24701394.2019.1597071
2-s2.0-85064525109
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 602-608
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808128980678606848