Phaseolus lunatus L.: pulse seeds phenotype image analysis

Detalhes bibliográficos
Autor(a) principal: de Jesus Dantas, Saulo [UNESP]
Data de Publicação: 2023
Outros Autores: Torres, Maria Fernanda Oliveira, Silva-Mann, Renata [UNESP], Vargas, Pablo Forlan [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
DOI: 10.1007/s10722-023-01583-y
Texto Completo: http://dx.doi.org/10.1007/s10722-023-01583-y
http://hdl.handle.net/11449/248745
Resumo: The locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes.
id UNSP_df9cd5c3ae8ba26325b052fdad54fca6
oai_identifier_str oai:repositorio.unesp.br:11449/248745
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Phaseolus lunatus L.: pulse seeds phenotype image analysisGenetic breedingGenetic diversityGermplasmLima beanSeed biometryThe locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes.Post-Graduation Program in Agronomy (Genetics and Plant Breeding) Paulista State University (UNESP), SPPost-Graduation Program in Agriculture and Biodiversity Federal University of Sergipe (UFS), SEDepartment of Agronomic Engineering Federal University of Sergipe (UFS), SEPaulista State University (UNESP), Campus RegistroPaulista State University (UNESP), SPPost-Graduation Program in Agronomy (Genetics and Plant Breeding) Paulista State University (UNESP), SPPaulista State University (UNESP), Campus RegistroPaulista State University (UNESP), SPUniversidade Estadual Paulista (UNESP)Universidade Federal de Sergipe (UFS)de Jesus Dantas, Saulo [UNESP]Torres, Maria Fernanda OliveiraSilva-Mann, Renata [UNESP]Vargas, Pablo Forlan [UNESP]2023-07-29T13:52:33Z2023-07-29T13:52:33Z2023-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s10722-023-01583-yGenetic Resources and Crop Evolution.1573-51090925-9864http://hdl.handle.net/11449/24874510.1007/s10722-023-01583-y2-s2.0-85153761187Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetic Resources and Crop Evolutioninfo:eu-repo/semantics/openAccess2024-05-03T13:19:51Zoai:repositorio.unesp.br:11449/248745Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T13:51:52.039342Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phaseolus lunatus L.: pulse seeds phenotype image analysis
title Phaseolus lunatus L.: pulse seeds phenotype image analysis
spellingShingle Phaseolus lunatus L.: pulse seeds phenotype image analysis
Phaseolus lunatus L.: pulse seeds phenotype image analysis
de Jesus Dantas, Saulo [UNESP]
Genetic breeding
Genetic diversity
Germplasm
Lima bean
Seed biometry
de Jesus Dantas, Saulo [UNESP]
Genetic breeding
Genetic diversity
Germplasm
Lima bean
Seed biometry
title_short Phaseolus lunatus L.: pulse seeds phenotype image analysis
title_full Phaseolus lunatus L.: pulse seeds phenotype image analysis
title_fullStr Phaseolus lunatus L.: pulse seeds phenotype image analysis
Phaseolus lunatus L.: pulse seeds phenotype image analysis
title_full_unstemmed Phaseolus lunatus L.: pulse seeds phenotype image analysis
Phaseolus lunatus L.: pulse seeds phenotype image analysis
title_sort Phaseolus lunatus L.: pulse seeds phenotype image analysis
author de Jesus Dantas, Saulo [UNESP]
author_facet de Jesus Dantas, Saulo [UNESP]
de Jesus Dantas, Saulo [UNESP]
Torres, Maria Fernanda Oliveira
Silva-Mann, Renata [UNESP]
Vargas, Pablo Forlan [UNESP]
Torres, Maria Fernanda Oliveira
Silva-Mann, Renata [UNESP]
Vargas, Pablo Forlan [UNESP]
author_role author
author2 Torres, Maria Fernanda Oliveira
Silva-Mann, Renata [UNESP]
Vargas, Pablo Forlan [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade Federal de Sergipe (UFS)
dc.contributor.author.fl_str_mv de Jesus Dantas, Saulo [UNESP]
Torres, Maria Fernanda Oliveira
Silva-Mann, Renata [UNESP]
Vargas, Pablo Forlan [UNESP]
dc.subject.por.fl_str_mv Genetic breeding
Genetic diversity
Germplasm
Lima bean
Seed biometry
topic Genetic breeding
Genetic diversity
Germplasm
Lima bean
Seed biometry
description The locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T13:52:33Z
2023-07-29T13:52:33Z
2023-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s10722-023-01583-y
Genetic Resources and Crop Evolution.
1573-5109
0925-9864
http://hdl.handle.net/11449/248745
10.1007/s10722-023-01583-y
2-s2.0-85153761187
url http://dx.doi.org/10.1007/s10722-023-01583-y
http://hdl.handle.net/11449/248745
identifier_str_mv Genetic Resources and Crop Evolution.
1573-5109
0925-9864
10.1007/s10722-023-01583-y
2-s2.0-85153761187
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetic Resources and Crop Evolution
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1822218502111494144
dc.identifier.doi.none.fl_str_mv 10.1007/s10722-023-01583-y