Phaseolus lunatus L.: pulse seeds phenotype image analysis
Autor(a) principal: | |
---|---|
Data de Publicação: | 2023 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
DOI: | 10.1007/s10722-023-01583-y |
Texto Completo: | http://dx.doi.org/10.1007/s10722-023-01583-y http://hdl.handle.net/11449/248745 |
Resumo: | The locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes. |
id |
UNSP_df9cd5c3ae8ba26325b052fdad54fca6 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/248745 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Phaseolus lunatus L.: pulse seeds phenotype image analysisGenetic breedingGenetic diversityGermplasmLima beanSeed biometryThe locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes.Post-Graduation Program in Agronomy (Genetics and Plant Breeding) Paulista State University (UNESP), SPPost-Graduation Program in Agriculture and Biodiversity Federal University of Sergipe (UFS), SEDepartment of Agronomic Engineering Federal University of Sergipe (UFS), SEPaulista State University (UNESP), Campus RegistroPaulista State University (UNESP), SPPost-Graduation Program in Agronomy (Genetics and Plant Breeding) Paulista State University (UNESP), SPPaulista State University (UNESP), Campus RegistroPaulista State University (UNESP), SPUniversidade Estadual Paulista (UNESP)Universidade Federal de Sergipe (UFS)de Jesus Dantas, Saulo [UNESP]Torres, Maria Fernanda OliveiraSilva-Mann, Renata [UNESP]Vargas, Pablo Forlan [UNESP]2023-07-29T13:52:33Z2023-07-29T13:52:33Z2023-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s10722-023-01583-yGenetic Resources and Crop Evolution.1573-51090925-9864http://hdl.handle.net/11449/24874510.1007/s10722-023-01583-y2-s2.0-85153761187Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetic Resources and Crop Evolutioninfo:eu-repo/semantics/openAccess2024-05-03T13:19:51Zoai:repositorio.unesp.br:11449/248745Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T13:51:52.039342Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Phaseolus lunatus L.: pulse seeds phenotype image analysis |
title |
Phaseolus lunatus L.: pulse seeds phenotype image analysis |
spellingShingle |
Phaseolus lunatus L.: pulse seeds phenotype image analysis Phaseolus lunatus L.: pulse seeds phenotype image analysis de Jesus Dantas, Saulo [UNESP] Genetic breeding Genetic diversity Germplasm Lima bean Seed biometry de Jesus Dantas, Saulo [UNESP] Genetic breeding Genetic diversity Germplasm Lima bean Seed biometry |
title_short |
Phaseolus lunatus L.: pulse seeds phenotype image analysis |
title_full |
Phaseolus lunatus L.: pulse seeds phenotype image analysis |
title_fullStr |
Phaseolus lunatus L.: pulse seeds phenotype image analysis Phaseolus lunatus L.: pulse seeds phenotype image analysis |
title_full_unstemmed |
Phaseolus lunatus L.: pulse seeds phenotype image analysis Phaseolus lunatus L.: pulse seeds phenotype image analysis |
title_sort |
Phaseolus lunatus L.: pulse seeds phenotype image analysis |
author |
de Jesus Dantas, Saulo [UNESP] |
author_facet |
de Jesus Dantas, Saulo [UNESP] de Jesus Dantas, Saulo [UNESP] Torres, Maria Fernanda Oliveira Silva-Mann, Renata [UNESP] Vargas, Pablo Forlan [UNESP] Torres, Maria Fernanda Oliveira Silva-Mann, Renata [UNESP] Vargas, Pablo Forlan [UNESP] |
author_role |
author |
author2 |
Torres, Maria Fernanda Oliveira Silva-Mann, Renata [UNESP] Vargas, Pablo Forlan [UNESP] |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) Universidade Federal de Sergipe (UFS) |
dc.contributor.author.fl_str_mv |
de Jesus Dantas, Saulo [UNESP] Torres, Maria Fernanda Oliveira Silva-Mann, Renata [UNESP] Vargas, Pablo Forlan [UNESP] |
dc.subject.por.fl_str_mv |
Genetic breeding Genetic diversity Germplasm Lima bean Seed biometry |
topic |
Genetic breeding Genetic diversity Germplasm Lima bean Seed biometry |
description |
The locally cultivated creole varieties of Phaseolus lunatus are adapted to specific climatic and environmental conditions. Family farmers and local communities preserve and multiply their seeds over generations, promoting genetic diversity, food and nutritional security, and agricultural sustainability. This species has great geno-phenotypic diversity, which can be harnessed in breeding programs if accurately characterized. We evaluated the phenotypic variations of P. lunatus seeds from 13 varieties in three states (Sergipe, Bahia, and Alagoas) using image analysis. We estimated the weight of 100 seeds using a precision analytical balance and obtained morphometric measurements, including area, maximum diameter, and minimum diameter, using Groundeye (TBit®) imaging equipment and software. We also recorded dominant color and RGB color system descriptors. The morphometric variables underwent variance analysis using the F-test, and the means were clustered using the Scott-Knott test at 5% significance level. The data underwent Pearson Correlation Analysis (t-Student at 5%), were grouped based on dissimilarity using the UPGMA method, and were represented in a dendrogram. We also performed Principal Component Analysis on the evaluated characteristics. The dominant color of the seeds was predominantly orange in nine varieties. Morphometry showed a positive and significant association. The dendrogram revealed two homogeneous and distinct groups, and the first two principal components accounted for 86.80% of the genotypic variation. Therefore, high-resolution images for phenotypic characterization of creole lima bean seeds are a promising non-destructive tool for selection purposes. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-07-29T13:52:33Z 2023-07-29T13:52:33Z 2023-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s10722-023-01583-y Genetic Resources and Crop Evolution. 1573-5109 0925-9864 http://hdl.handle.net/11449/248745 10.1007/s10722-023-01583-y 2-s2.0-85153761187 |
url |
http://dx.doi.org/10.1007/s10722-023-01583-y http://hdl.handle.net/11449/248745 |
identifier_str_mv |
Genetic Resources and Crop Evolution. 1573-5109 0925-9864 10.1007/s10722-023-01583-y 2-s2.0-85153761187 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Genetic Resources and Crop Evolution |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1822218502111494144 |
dc.identifier.doi.none.fl_str_mv |
10.1007/s10722-023-01583-y |