Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)

Detalhes bibliográficos
Autor(a) principal: Nogueira, Acacio F. [UNESP]
Data de Publicação: 2020
Outros Autores: Oliveira, Claudio [UNESP], Langeani, Francisco [UNESP], Netto-Ferreira, Andre L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1111/zsc.12469
http://hdl.handle.net/11449/209787
Resumo: Hemiodus is the largest genus of the South American freshwater fish family Hemiodontidae, with 23 valid species. However, the species-level diversity of Hemiodus remains uncertain since morphological studies have indicated additional species. Also, the phylogenetic relationships among species and species boundaries within this genus are still unresolved. Herein, we sequenced the barcode (COI) gene of 19 species of Hemiodus on which undertook molecular species delimitation methods (automatic barcode gap discovery [ABGD], generalized mixed Yule coalescent [GMYC] and Poisson tree process [PTP]) and the standard DNA barcoding procedure to establish species boundaries and cast light on putative new species in the genus. We also provide a COI-based phylogenetic hypothesis for Hemiodus by maximum-likelihood (ML) analysis, the first at species level. The results of ABGD, GMYC and PTP indicate that around 30 MOTUs (range: 28-32) exist for Hemiodus within our data set of 19 valid species with concordance among strategies (i.e. equal results) in delimiting 24 MOTUs. Using classical DNA barcoding procedures, we settled on 28 MOTUs for Hemiodus. Undescribed morphospecies (i.e. feasible for description or taxonomic validation), as well as cryptic species (i.e. lineages with high genetic distance but indistinguishable in external morphology), are proposed. Even with the limitations of a single-locus phylogeny, the ML tree recovered many species and species groups as clades, corroborating, thus, their taxonomic separation. Overall, our results highlight the existence of an overlooked diversity of mitochondrial lineages in Hemiodus that can represent cryptic or poorly scrutinized species. Moreover, this study provides a molecular backbone for future studies on the systematics and evolution of Hemiodontidae taxa.
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spelling Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)DNA barcodingfreshwater fishesHemiodontidaeSouth AmericaHemiodus is the largest genus of the South American freshwater fish family Hemiodontidae, with 23 valid species. However, the species-level diversity of Hemiodus remains uncertain since morphological studies have indicated additional species. Also, the phylogenetic relationships among species and species boundaries within this genus are still unresolved. Herein, we sequenced the barcode (COI) gene of 19 species of Hemiodus on which undertook molecular species delimitation methods (automatic barcode gap discovery [ABGD], generalized mixed Yule coalescent [GMYC] and Poisson tree process [PTP]) and the standard DNA barcoding procedure to establish species boundaries and cast light on putative new species in the genus. We also provide a COI-based phylogenetic hypothesis for Hemiodus by maximum-likelihood (ML) analysis, the first at species level. The results of ABGD, GMYC and PTP indicate that around 30 MOTUs (range: 28-32) exist for Hemiodus within our data set of 19 valid species with concordance among strategies (i.e. equal results) in delimiting 24 MOTUs. Using classical DNA barcoding procedures, we settled on 28 MOTUs for Hemiodus. Undescribed morphospecies (i.e. feasible for description or taxonomic validation), as well as cryptic species (i.e. lineages with high genetic distance but indistinguishable in external morphology), are proposed. Even with the limitations of a single-locus phylogeny, the ML tree recovered many species and species groups as clades, corroborating, thus, their taxonomic separation. Overall, our results highlight the existence of an overlooked diversity of mitochondrial lineages in Hemiodus that can represent cryptic or poorly scrutinized species. Moreover, this study provides a molecular backbone for future studies on the systematics and evolution of Hemiodontidae taxa.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Univ Fed Para, Inst Ciencias Biol, Programa Posgrad Zool, Belem, Para, BrazilMuseu Paraense Emilio Goeldi, Belem, Para, BrazilUniv Estadual Paulista, Lab Biol & Genet Peixes, Dept Biol Estrutural & Func, Inst Biociencias, R Prof Dr Antonio CW Zanin,250, BR-18618689 Botucatu, SP, BrazilUniv Fed Rio Grande do Sul, Inst Biociencias, Dept Zool, Lab Ictiol, Porto Alegre, RS, BrazilUniv Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Zool & Bot, Sao Jose Do Rio Preto, BrazilUniv Estadual Paulista, Lab Biol & Genet Peixes, Dept Biol Estrutural & Func, Inst Biociencias, R Prof Dr Antonio CW Zanin,250, BR-18618689 Botucatu, SP, BrazilUniv Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Dept Zool & Bot, Sao Jose Do Rio Preto, BrazilWiley-BlackwellUniv Fed ParaMuseu Paraense Emilio GoeldiUniversidade Estadual Paulista (Unesp)Univ Fed Rio Grande do SulNogueira, Acacio F. [UNESP]Oliveira, Claudio [UNESP]Langeani, Francisco [UNESP]Netto-Ferreira, Andre L.2021-06-25T12:29:18Z2021-06-25T12:29:18Z2020-12-19info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article337-351http://dx.doi.org/10.1111/zsc.12469Zoologica Scripta. Hoboken: Wiley, v. 50, n. 3, p. 337-351, 2021.0300-3256http://hdl.handle.net/11449/20978710.1111/zsc.12469WOS:000600012300001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengZoologica Scriptainfo:eu-repo/semantics/openAccess2021-10-23T19:50:02Zoai:repositorio.unesp.br:11449/209787Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:57:09.666929Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
title Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
spellingShingle Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
Nogueira, Acacio F. [UNESP]
DNA barcoding
freshwater fishes
Hemiodontidae
South America
title_short Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
title_full Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
title_fullStr Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
title_full_unstemmed Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
title_sort Overlooked biodiversity of mitochondrial lineages in Hemiodus (Ostariophysi, Characiformes)
author Nogueira, Acacio F. [UNESP]
author_facet Nogueira, Acacio F. [UNESP]
Oliveira, Claudio [UNESP]
Langeani, Francisco [UNESP]
Netto-Ferreira, Andre L.
author_role author
author2 Oliveira, Claudio [UNESP]
Langeani, Francisco [UNESP]
Netto-Ferreira, Andre L.
author2_role author
author
author
dc.contributor.none.fl_str_mv Univ Fed Para
Museu Paraense Emilio Goeldi
Universidade Estadual Paulista (Unesp)
Univ Fed Rio Grande do Sul
dc.contributor.author.fl_str_mv Nogueira, Acacio F. [UNESP]
Oliveira, Claudio [UNESP]
Langeani, Francisco [UNESP]
Netto-Ferreira, Andre L.
dc.subject.por.fl_str_mv DNA barcoding
freshwater fishes
Hemiodontidae
South America
topic DNA barcoding
freshwater fishes
Hemiodontidae
South America
description Hemiodus is the largest genus of the South American freshwater fish family Hemiodontidae, with 23 valid species. However, the species-level diversity of Hemiodus remains uncertain since morphological studies have indicated additional species. Also, the phylogenetic relationships among species and species boundaries within this genus are still unresolved. Herein, we sequenced the barcode (COI) gene of 19 species of Hemiodus on which undertook molecular species delimitation methods (automatic barcode gap discovery [ABGD], generalized mixed Yule coalescent [GMYC] and Poisson tree process [PTP]) and the standard DNA barcoding procedure to establish species boundaries and cast light on putative new species in the genus. We also provide a COI-based phylogenetic hypothesis for Hemiodus by maximum-likelihood (ML) analysis, the first at species level. The results of ABGD, GMYC and PTP indicate that around 30 MOTUs (range: 28-32) exist for Hemiodus within our data set of 19 valid species with concordance among strategies (i.e. equal results) in delimiting 24 MOTUs. Using classical DNA barcoding procedures, we settled on 28 MOTUs for Hemiodus. Undescribed morphospecies (i.e. feasible for description or taxonomic validation), as well as cryptic species (i.e. lineages with high genetic distance but indistinguishable in external morphology), are proposed. Even with the limitations of a single-locus phylogeny, the ML tree recovered many species and species groups as clades, corroborating, thus, their taxonomic separation. Overall, our results highlight the existence of an overlooked diversity of mitochondrial lineages in Hemiodus that can represent cryptic or poorly scrutinized species. Moreover, this study provides a molecular backbone for future studies on the systematics and evolution of Hemiodontidae taxa.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-19
2021-06-25T12:29:18Z
2021-06-25T12:29:18Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1111/zsc.12469
Zoologica Scripta. Hoboken: Wiley, v. 50, n. 3, p. 337-351, 2021.
0300-3256
http://hdl.handle.net/11449/209787
10.1111/zsc.12469
WOS:000600012300001
url http://dx.doi.org/10.1111/zsc.12469
http://hdl.handle.net/11449/209787
identifier_str_mv Zoologica Scripta. Hoboken: Wiley, v. 50, n. 3, p. 337-351, 2021.
0300-3256
10.1111/zsc.12469
WOS:000600012300001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Zoologica Scripta
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 337-351
dc.publisher.none.fl_str_mv Wiley-Blackwell
publisher.none.fl_str_mv Wiley-Blackwell
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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