Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pntd.0003068 http://hdl.handle.net/11449/117386 |
Resumo: | Background: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control. |
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Repositório Institucional da UNESP |
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spelling |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensisBackground: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)French Agence Nationale de la RechercheIRD, BEI UR072, Gif Sur Yvette, FranceCNRS UPSud11, LEGS UPR9034, Gif Sur Yvette, FranceFiocruz MS, Inst Oswaldo Cruz, Lab Biodiversidade Entomol, BR-21045900 Rio De Janeiro, BrazilUNESP, Fac Ciencias Farmaceut, Dept Ciencias Biol, Araraquara, Sao Paolo, BrazilUniv Mayor San Andres, Inst Ecol, La Paz, BoliviaUNESP, Fac Ciencias Farmaceut, Dept Ciencias Biol, Araraquara, Sao Paolo, BrazilFAPESP: 10/17027-0FAPESP: 11/22378French Agence Nationale de la RechercheAdaptanthrop ANR-097-PEXT-009Public Library ScienceIRDCNRS UPSud11Fiocruz MSUniversidade Estadual Paulista (Unesp)Univ Mayor San AndresRebaudo, FrancoisCosta, JaneAlmeida, Carlos E. [UNESP]Silvain, Jean-FrancoisHarry, MyriamDangles, Olivier2015-03-18T15:56:00Z2015-03-18T15:56:00Z2014-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.1371/journal.pntd.0003068Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014.1935-2735http://hdl.handle.net/11449/11738610.1371/journal.pntd.0003068WOS:000341574700036WOS000341574700036.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPlos Neglected Tropical Diseases4.3672,589info:eu-repo/semantics/openAccess2024-06-24T13:08:13Zoai:repositorio.unesp.br:11449/117386Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:27:14.475271Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
title |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
spellingShingle |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis Rebaudo, Francois |
title_short |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
title_full |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
title_fullStr |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
title_full_unstemmed |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
title_sort |
Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis |
author |
Rebaudo, Francois |
author_facet |
Rebaudo, Francois Costa, Jane Almeida, Carlos E. [UNESP] Silvain, Jean-Francois Harry, Myriam Dangles, Olivier |
author_role |
author |
author2 |
Costa, Jane Almeida, Carlos E. [UNESP] Silvain, Jean-Francois Harry, Myriam Dangles, Olivier |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
IRD CNRS UPSud11 Fiocruz MS Universidade Estadual Paulista (Unesp) Univ Mayor San Andres |
dc.contributor.author.fl_str_mv |
Rebaudo, Francois Costa, Jane Almeida, Carlos E. [UNESP] Silvain, Jean-Francois Harry, Myriam Dangles, Olivier |
description |
Background: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-08-01 2015-03-18T15:56:00Z 2015-03-18T15:56:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pntd.0003068 Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014. 1935-2735 http://hdl.handle.net/11449/117386 10.1371/journal.pntd.0003068 WOS:000341574700036 WOS000341574700036.pdf |
url |
http://dx.doi.org/10.1371/journal.pntd.0003068 http://hdl.handle.net/11449/117386 |
identifier_str_mv |
Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014. 1935-2735 10.1371/journal.pntd.0003068 WOS:000341574700036 WOS000341574700036.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Plos Neglected Tropical Diseases 4.367 2,589 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
8 application/pdf |
dc.publisher.none.fl_str_mv |
Public Library Science |
publisher.none.fl_str_mv |
Public Library Science |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
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1808129321388212224 |