Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis

Detalhes bibliográficos
Autor(a) principal: Rebaudo, Francois
Data de Publicação: 2014
Outros Autores: Costa, Jane, Almeida, Carlos E. [UNESP], Silvain, Jean-Francois, Harry, Myriam, Dangles, Olivier
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pntd.0003068
http://hdl.handle.net/11449/117386
Resumo: Background: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control.
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spelling Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensisBackground: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)French Agence Nationale de la RechercheIRD, BEI UR072, Gif Sur Yvette, FranceCNRS UPSud11, LEGS UPR9034, Gif Sur Yvette, FranceFiocruz MS, Inst Oswaldo Cruz, Lab Biodiversidade Entomol, BR-21045900 Rio De Janeiro, BrazilUNESP, Fac Ciencias Farmaceut, Dept Ciencias Biol, Araraquara, Sao Paolo, BrazilUniv Mayor San Andres, Inst Ecol, La Paz, BoliviaUNESP, Fac Ciencias Farmaceut, Dept Ciencias Biol, Araraquara, Sao Paolo, BrazilFAPESP: 10/17027-0FAPESP: 11/22378French Agence Nationale de la RechercheAdaptanthrop ANR-097-PEXT-009Public Library ScienceIRDCNRS UPSud11Fiocruz MSUniversidade Estadual Paulista (Unesp)Univ Mayor San AndresRebaudo, FrancoisCosta, JaneAlmeida, Carlos E. [UNESP]Silvain, Jean-FrancoisHarry, MyriamDangles, Olivier2015-03-18T15:56:00Z2015-03-18T15:56:00Z2014-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.1371/journal.pntd.0003068Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014.1935-2735http://hdl.handle.net/11449/11738610.1371/journal.pntd.0003068WOS:000341574700036WOS000341574700036.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPlos Neglected Tropical Diseases4.3672,589info:eu-repo/semantics/openAccess2024-06-24T13:08:13Zoai:repositorio.unesp.br:11449/117386Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:27:14.475271Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
title Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
spellingShingle Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
Rebaudo, Francois
title_short Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
title_full Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
title_fullStr Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
title_full_unstemmed Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
title_sort Simulating Population Genetics of Pathogen Vectors in Changing Landscapes: Guidelines and Application with Triatoma brasiliensis
author Rebaudo, Francois
author_facet Rebaudo, Francois
Costa, Jane
Almeida, Carlos E. [UNESP]
Silvain, Jean-Francois
Harry, Myriam
Dangles, Olivier
author_role author
author2 Costa, Jane
Almeida, Carlos E. [UNESP]
Silvain, Jean-Francois
Harry, Myriam
Dangles, Olivier
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv IRD
CNRS UPSud11
Fiocruz MS
Universidade Estadual Paulista (Unesp)
Univ Mayor San Andres
dc.contributor.author.fl_str_mv Rebaudo, Francois
Costa, Jane
Almeida, Carlos E. [UNESP]
Silvain, Jean-Francois
Harry, Myriam
Dangles, Olivier
description Background: Understanding the mechanisms that influence the population dynamics and spatial genetic structure of the vectors of pathogens infecting humans is a central issue in tropical epidemiology. In view of the rapid changes in the features of landscape pathogen vectors live in, this issue requires new methods that consider both natural and human systems and their interactions. In this context, individual-based model (IBM) simulations represent powerful yet poorly developed approaches to explore the response of pathogen vectors in heterogeneous social-ecological systems, especially when field experiments cannot be performed.Methodology/Principal Findings: We first present guidelines for the use of a spatially explicit IBM, to simulate population genetics of pathogen vectors in changing landscapes. We then applied our model with Triatoma brasiliensis, originally restricted to sylvatic habitats and now found in peridomestic and domestic habitats, posing as the most important Trypanosoma cruzi vector in Northeastern Brazil. We focused on the effects of vector migration rate, maximum dispersal distance and attraction by domestic habitat on T. brasiliensis population dynamics and spatial genetic structure. Optimized for T. brasiliensis using field data pairwise fixation index (FST) from microsatellite loci, our simulations confirmed the importance of these three variables to understand vector genetic structure at the landscape level. We then ran prospective scenarios accounting for land-use change (deforestation and urbanization), which revealed that human-induced land-use change favored higher genetic diversity among sampling points.Conclusions/Significance: Our work shows that mechanistic models may be useful tools to link observed patterns with processes involved in the population genetics of tropical pathogen vectors in heterogeneous social-ecological landscapes. Our hope is that our study may provide a testable and applicable modeling framework to a broad community of epidemiologists for formulating scenarios of landscape change consequences on vector dynamics, with potential implications for their surveillance and control.
publishDate 2014
dc.date.none.fl_str_mv 2014-08-01
2015-03-18T15:56:00Z
2015-03-18T15:56:00Z
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format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pntd.0003068
Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014.
1935-2735
http://hdl.handle.net/11449/117386
10.1371/journal.pntd.0003068
WOS:000341574700036
WOS000341574700036.pdf
url http://dx.doi.org/10.1371/journal.pntd.0003068
http://hdl.handle.net/11449/117386
identifier_str_mv Plos Neglected Tropical Diseases. San Francisco: Public Library Science, v. 8, n. 8, 8 p., 2014.
1935-2735
10.1371/journal.pntd.0003068
WOS:000341574700036
WOS000341574700036.pdf
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language eng
dc.relation.none.fl_str_mv Plos Neglected Tropical Diseases
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dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
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reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
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