Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi

Detalhes bibliográficos
Autor(a) principal: Bravo, Gustavo A.
Data de Publicação: 2021
Outros Autores: Whitney, Bret M., Belmonte-Lopes, Ricardo, Bornschein, Marcos R. [UNESP], Aristizábal, Natalia, Beco, Renata, Battilana, Jaqueline, Naka, Luciano N., Aleixo, Alexandre, Pie, Marcio R., Silveira, Luís F., Derryberry, Elizabeth P., Brumfield, Robb T.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1093/ornithology/ukab025
http://hdl.handle.net/11449/222093
Resumo: The family Thamnophilidae is a species-rich Neotropical radiation of passerine birds. Current classification of its 235 species is mostly based on morphological similarities, but recent studies integrating comprehensive phenotypic and phylogenetic data have redefined taxonomic limits of several taxa. Here, we assess generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus using DNA sequences from the mitochondrion, nuclear exons, and ultraconserved elements, with further attention to interspecific relationships within Herpsilochmus. We show that Herpsilochmus and Sakesphorus are not monophyletic. We resolve Herpsilochmus sellowi as a deep-branch sister to the monotypic genus Biatas and Sakesphorus cristatus as sister to a clade comprising Herpsilochmus sensu stricto and Dysithamnus. These results are consistent across loci, obtained via concatenation and coalescent-based analyses, and supported by likelihood-ratio tests of the distribution of our sampled coalescent histories. The phenotypic distinctiveness of both H. sellowi and Biatas argues against merging them into a single genus. Because no generic name is available for H. sellowi, we describe a monotypic genus. The polyphyly of Sakesphorus warrants recognition of the available generic name Sakesphoroides for the distinctive and monotypic S. cristatus. Furthermore, we recover 6 well-supported species groups within Herpsilochmus sensu stricto. Within the context of the family as a whole, the ubiquity of long terminal branches representing monotypic genera points to extinction events among ancestors of these lineages. We suggest that retention of ancestral characters or random genetic drift coupled with extensive extinction could explain the high degree of morphological and ecological similarity across these taxa, but we highlight the potential role of the environment in driving adaptive phenotypic convergence. Finally, our results send a cautionary message against the blind use of phylogenies containing imputed data based on taxonomy due to the increasingly frequent mismatches between traditional taxonomic classification and molecular phylogenies. LAY SUMMARY We conduct phylogenomic analyses to infer generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus. Using thousands of ultraconserved elements, exons, and mitochondrial DNA, we consistently show that the genus Herpsilochmus is not monophyletic because H. sellowi is a sister of the monotypic species Biatas nigropectus. Because the phenotypic distinctiveness of H. sellowi and B. nigropectus argues against merging them into a single genus and there is no available generic name for H. sellowi, we describe a monotypic genus for this species. We also found polyphyly of the genus Sakesphorus, warranting recognition of the available generic name Sakesphoroides for Sakesphorus cristatus. Our results provide a robust framework for downstream analyses of biogeographic and phenotypic evolution of Herpsilochmus antwrens and allies. This study adds to the increasing body of literature documenting the mismatch between traditional avian taxonomic classifications based on external morphology and evolutionary histories traced by modern genetic tools.
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spelling Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowiAntbird phylogenyMonotypic generaPhenotypic constraintsPhenotypic convergenceSystematicsThe family Thamnophilidae is a species-rich Neotropical radiation of passerine birds. Current classification of its 235 species is mostly based on morphological similarities, but recent studies integrating comprehensive phenotypic and phylogenetic data have redefined taxonomic limits of several taxa. Here, we assess generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus using DNA sequences from the mitochondrion, nuclear exons, and ultraconserved elements, with further attention to interspecific relationships within Herpsilochmus. We show that Herpsilochmus and Sakesphorus are not monophyletic. We resolve Herpsilochmus sellowi as a deep-branch sister to the monotypic genus Biatas and Sakesphorus cristatus as sister to a clade comprising Herpsilochmus sensu stricto and Dysithamnus. These results are consistent across loci, obtained via concatenation and coalescent-based analyses, and supported by likelihood-ratio tests of the distribution of our sampled coalescent histories. The phenotypic distinctiveness of both H. sellowi and Biatas argues against merging them into a single genus. Because no generic name is available for H. sellowi, we describe a monotypic genus. The polyphyly of Sakesphorus warrants recognition of the available generic name Sakesphoroides for the distinctive and monotypic S. cristatus. Furthermore, we recover 6 well-supported species groups within Herpsilochmus sensu stricto. Within the context of the family as a whole, the ubiquity of long terminal branches representing monotypic genera points to extinction events among ancestors of these lineages. We suggest that retention of ancestral characters or random genetic drift coupled with extensive extinction could explain the high degree of morphological and ecological similarity across these taxa, but we highlight the potential role of the environment in driving adaptive phenotypic convergence. Finally, our results send a cautionary message against the blind use of phylogenies containing imputed data based on taxonomy due to the increasingly frequent mismatches between traditional taxonomic classification and molecular phylogenies. LAY SUMMARY We conduct phylogenomic analyses to infer generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus. Using thousands of ultraconserved elements, exons, and mitochondrial DNA, we consistently show that the genus Herpsilochmus is not monophyletic because H. sellowi is a sister of the monotypic species Biatas nigropectus. Because the phenotypic distinctiveness of H. sellowi and B. nigropectus argues against merging them into a single genus and there is no available generic name for H. sellowi, we describe a monotypic genus for this species. We also found polyphyly of the genus Sakesphorus, warranting recognition of the available generic name Sakesphoroides for Sakesphorus cristatus. Our results provide a robust framework for downstream analyses of biogeographic and phenotypic evolution of Herpsilochmus antwrens and allies. This study adds to the increasing body of literature documenting the mismatch between traditional avian taxonomic classifications based on external morphology and evolutionary histories traced by modern genetic tools.Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology Harvard UniversitySeção de Aves Museu de Zoologia Universidade de São PauloMuseum of Natural Science and Department of Biological Sciences Louisiana State UniversityDepartamento de Zoologia Universidade Federal do Paraná Centro PolitécnicoPrograma de Pós-Graduação em Zoologia Departamento de Zoologia Universidade Federal do Paraná Centro PolitécnicoDepartamento de Ciências Biológicas e Ambientais Instituto de Biociências Universidade Estadual PaulistaMater Natura - Instituto de Estudos AmbientaisGund Institute for Environment The University of VermontRubenstein School of Environment and Natural Resources The University of VermontDepartamento de Zoologia Universidade Federal de PernambucoCoordenação de Zoologia Museu Paraense Emílio GoeldiFinnish Museum of Natural History University of HelsinkiDepartment of Ecology and Evolutionary Biology University of TennesseeDepartamento de Ciências Biológicas e Ambientais Instituto de Biociências Universidade Estadual PaulistaHarvard UniversityUniversidade de São Paulo (USP)Louisiana State UniversityUniversidade Federal do Paraná (UFPR)Universidade Estadual Paulista (UNESP)Mater Natura - Instituto de Estudos AmbientaisThe University of VermontUniversidade Federal de Pernambuco (UFPE)Museu Paraense Emílio GoeldiUniversity of HelsinkiUniversity of TennesseeBravo, Gustavo A.Whitney, Bret M.Belmonte-Lopes, RicardoBornschein, Marcos R. [UNESP]Aristizábal, NataliaBeco, RenataBattilana, JaquelineNaka, Luciano N.Aleixo, AlexandrePie, Marcio R.Silveira, Luís F.Derryberry, Elizabeth P.Brumfield, Robb T.2022-04-28T19:42:16Z2022-04-28T19:42:16Z2021-07-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1093/ornithology/ukab025Auk, v. 138, n. 3, 2021.0004-8038http://hdl.handle.net/11449/22209310.1093/ornithology/ukab0252-s2.0-85111578082Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengAukinfo:eu-repo/semantics/openAccess2022-04-28T19:42:16Zoai:repositorio.unesp.br:11449/222093Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-28T19:42:16Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
title Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
spellingShingle Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
Bravo, Gustavo A.
Antbird phylogeny
Monotypic genera
Phenotypic constraints
Phenotypic convergence
Systematics
title_short Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
title_full Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
title_fullStr Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
title_full_unstemmed Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
title_sort Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi
author Bravo, Gustavo A.
author_facet Bravo, Gustavo A.
Whitney, Bret M.
Belmonte-Lopes, Ricardo
Bornschein, Marcos R. [UNESP]
Aristizábal, Natalia
Beco, Renata
Battilana, Jaqueline
Naka, Luciano N.
Aleixo, Alexandre
Pie, Marcio R.
Silveira, Luís F.
Derryberry, Elizabeth P.
Brumfield, Robb T.
author_role author
author2 Whitney, Bret M.
Belmonte-Lopes, Ricardo
Bornschein, Marcos R. [UNESP]
Aristizábal, Natalia
Beco, Renata
Battilana, Jaqueline
Naka, Luciano N.
Aleixo, Alexandre
Pie, Marcio R.
Silveira, Luís F.
Derryberry, Elizabeth P.
Brumfield, Robb T.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Harvard University
Universidade de São Paulo (USP)
Louisiana State University
Universidade Federal do Paraná (UFPR)
Universidade Estadual Paulista (UNESP)
Mater Natura - Instituto de Estudos Ambientais
The University of Vermont
Universidade Federal de Pernambuco (UFPE)
Museu Paraense Emílio Goeldi
University of Helsinki
University of Tennessee
dc.contributor.author.fl_str_mv Bravo, Gustavo A.
Whitney, Bret M.
Belmonte-Lopes, Ricardo
Bornschein, Marcos R. [UNESP]
Aristizábal, Natalia
Beco, Renata
Battilana, Jaqueline
Naka, Luciano N.
Aleixo, Alexandre
Pie, Marcio R.
Silveira, Luís F.
Derryberry, Elizabeth P.
Brumfield, Robb T.
dc.subject.por.fl_str_mv Antbird phylogeny
Monotypic genera
Phenotypic constraints
Phenotypic convergence
Systematics
topic Antbird phylogeny
Monotypic genera
Phenotypic constraints
Phenotypic convergence
Systematics
description The family Thamnophilidae is a species-rich Neotropical radiation of passerine birds. Current classification of its 235 species is mostly based on morphological similarities, but recent studies integrating comprehensive phenotypic and phylogenetic data have redefined taxonomic limits of several taxa. Here, we assess generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus using DNA sequences from the mitochondrion, nuclear exons, and ultraconserved elements, with further attention to interspecific relationships within Herpsilochmus. We show that Herpsilochmus and Sakesphorus are not monophyletic. We resolve Herpsilochmus sellowi as a deep-branch sister to the monotypic genus Biatas and Sakesphorus cristatus as sister to a clade comprising Herpsilochmus sensu stricto and Dysithamnus. These results are consistent across loci, obtained via concatenation and coalescent-based analyses, and supported by likelihood-ratio tests of the distribution of our sampled coalescent histories. The phenotypic distinctiveness of both H. sellowi and Biatas argues against merging them into a single genus. Because no generic name is available for H. sellowi, we describe a monotypic genus. The polyphyly of Sakesphorus warrants recognition of the available generic name Sakesphoroides for the distinctive and monotypic S. cristatus. Furthermore, we recover 6 well-supported species groups within Herpsilochmus sensu stricto. Within the context of the family as a whole, the ubiquity of long terminal branches representing monotypic genera points to extinction events among ancestors of these lineages. We suggest that retention of ancestral characters or random genetic drift coupled with extensive extinction could explain the high degree of morphological and ecological similarity across these taxa, but we highlight the potential role of the environment in driving adaptive phenotypic convergence. Finally, our results send a cautionary message against the blind use of phylogenies containing imputed data based on taxonomy due to the increasingly frequent mismatches between traditional taxonomic classification and molecular phylogenies. LAY SUMMARY We conduct phylogenomic analyses to infer generic relationships of Herpsilochmus, Sakesphorus, Thamnophilus, Biatas, and Dysithamnus. Using thousands of ultraconserved elements, exons, and mitochondrial DNA, we consistently show that the genus Herpsilochmus is not monophyletic because H. sellowi is a sister of the monotypic species Biatas nigropectus. Because the phenotypic distinctiveness of H. sellowi and B. nigropectus argues against merging them into a single genus and there is no available generic name for H. sellowi, we describe a monotypic genus for this species. We also found polyphyly of the genus Sakesphorus, warranting recognition of the available generic name Sakesphoroides for Sakesphorus cristatus. Our results provide a robust framework for downstream analyses of biogeographic and phenotypic evolution of Herpsilochmus antwrens and allies. This study adds to the increasing body of literature documenting the mismatch between traditional avian taxonomic classifications based on external morphology and evolutionary histories traced by modern genetic tools.
publishDate 2021
dc.date.none.fl_str_mv 2021-07-01
2022-04-28T19:42:16Z
2022-04-28T19:42:16Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1093/ornithology/ukab025
Auk, v. 138, n. 3, 2021.
0004-8038
http://hdl.handle.net/11449/222093
10.1093/ornithology/ukab025
2-s2.0-85111578082
url http://dx.doi.org/10.1093/ornithology/ukab025
http://hdl.handle.net/11449/222093
identifier_str_mv Auk, v. 138, n. 3, 2021.
0004-8038
10.1093/ornithology/ukab025
2-s2.0-85111578082
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Auk
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
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repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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