STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers

Detalhes bibliográficos
Autor(a) principal: Nguyen, Loan T.
Data de Publicação: 2018
Outros Autores: Reverter, Antonio, Canovas, Angela, Venus, Bronwyn, Anderson, Stephen T., Islas-Trejo, Alma, Dias, Marina M. [UNESP], Crawford, Natalie F., Lehnert, Sigrid A., Medrano, Juan F., Thomas, Milt G., Moore, Stephen S., Fortes, Marina R. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fgene.2018.00087
http://hdl.handle.net/11449/160170
Resumo: The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers.
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spelling STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman HeifersBos indicuspubertygene expressionRNA sequencinggene networkliverThe liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers.University of QueenslandUniv Queensland, Sch Chem & Mol Biosci, St Lucia, Qld, AustraliaVietnam Natl Univ Agr, Fac Biotechnol, Hanoi, VietnamCSIRO Agr & Food, Queensland Biosci Precinct, St Lucia, Qld, AustraliaUniv Guelph, Dept Anim Biosci, Ctr Genet Improvement Livestock, Guelph, ON, CanadaUniv Queensland, Queensland Alliance Agr & Food Innovat, St Lucia, Qld, AustraliaUniv Queensland, Sch Biomed Sci, Brisbane, Qld, AustraliaUniv Calif Davis, Dept Anim Sci, Davis, CA 95616 USAUniv Estadual Paulista, Dept Zootecnia, Fac Ciencias Agr & Vet, Sao Paulo, BrazilColorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USAUniv Estadual Paulista, Dept Zootecnia, Fac Ciencias Agr & Vet, Sao Paulo, BrazilFrontiers Media SaUniv QueenslandVietnam Natl Univ AgrCSIRO Agr & FoodUniv GuelphUniv Calif DavisUniversidade Estadual Paulista (Unesp)Colorado State UnivNguyen, Loan T.Reverter, AntonioCanovas, AngelaVenus, BronwynAnderson, Stephen T.Islas-Trejo, AlmaDias, Marina M. [UNESP]Crawford, Natalie F.Lehnert, Sigrid A.Medrano, Juan F.Thomas, Milt G.Moore, Stephen S.Fortes, Marina R. S.2018-11-26T15:47:44Z2018-11-26T15:47:44Z2018-03-20info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article13application/pdfhttp://dx.doi.org/10.3389/fgene.2018.00087Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018.1664-8021http://hdl.handle.net/11449/16017010.3389/fgene.2018.00087WOS:000427888900001WOS000427888900001.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Genetics2,274info:eu-repo/semantics/openAccess2023-10-27T06:09:22Zoai:repositorio.unesp.br:11449/160170Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:09:41.263341Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
title STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
spellingShingle STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
Nguyen, Loan T.
Bos indicus
puberty
gene expression
RNA sequencing
gene network
liver
title_short STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
title_full STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
title_fullStr STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
title_full_unstemmed STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
title_sort STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
author Nguyen, Loan T.
author_facet Nguyen, Loan T.
Reverter, Antonio
Canovas, Angela
Venus, Bronwyn
Anderson, Stephen T.
Islas-Trejo, Alma
Dias, Marina M. [UNESP]
Crawford, Natalie F.
Lehnert, Sigrid A.
Medrano, Juan F.
Thomas, Milt G.
Moore, Stephen S.
Fortes, Marina R. S.
author_role author
author2 Reverter, Antonio
Canovas, Angela
Venus, Bronwyn
Anderson, Stephen T.
Islas-Trejo, Alma
Dias, Marina M. [UNESP]
Crawford, Natalie F.
Lehnert, Sigrid A.
Medrano, Juan F.
Thomas, Milt G.
Moore, Stephen S.
Fortes, Marina R. S.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Univ Queensland
Vietnam Natl Univ Agr
CSIRO Agr & Food
Univ Guelph
Univ Calif Davis
Universidade Estadual Paulista (Unesp)
Colorado State Univ
dc.contributor.author.fl_str_mv Nguyen, Loan T.
Reverter, Antonio
Canovas, Angela
Venus, Bronwyn
Anderson, Stephen T.
Islas-Trejo, Alma
Dias, Marina M. [UNESP]
Crawford, Natalie F.
Lehnert, Sigrid A.
Medrano, Juan F.
Thomas, Milt G.
Moore, Stephen S.
Fortes, Marina R. S.
dc.subject.por.fl_str_mv Bos indicus
puberty
gene expression
RNA sequencing
gene network
liver
topic Bos indicus
puberty
gene expression
RNA sequencing
gene network
liver
description The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers.
publishDate 2018
dc.date.none.fl_str_mv 2018-11-26T15:47:44Z
2018-11-26T15:47:44Z
2018-03-20
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fgene.2018.00087
Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018.
1664-8021
http://hdl.handle.net/11449/160170
10.3389/fgene.2018.00087
WOS:000427888900001
WOS000427888900001.pdf
url http://dx.doi.org/10.3389/fgene.2018.00087
http://hdl.handle.net/11449/160170
identifier_str_mv Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018.
1664-8021
10.3389/fgene.2018.00087
WOS:000427888900001
WOS000427888900001.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers In Genetics
2,274
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 13
application/pdf
dc.publisher.none.fl_str_mv Frontiers Media Sa
publisher.none.fl_str_mv Frontiers Media Sa
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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