STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3389/fgene.2018.00087 http://hdl.handle.net/11449/160170 |
Resumo: | The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers. |
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STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman HeifersBos indicuspubertygene expressionRNA sequencinggene networkliverThe liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers.University of QueenslandUniv Queensland, Sch Chem & Mol Biosci, St Lucia, Qld, AustraliaVietnam Natl Univ Agr, Fac Biotechnol, Hanoi, VietnamCSIRO Agr & Food, Queensland Biosci Precinct, St Lucia, Qld, AustraliaUniv Guelph, Dept Anim Biosci, Ctr Genet Improvement Livestock, Guelph, ON, CanadaUniv Queensland, Queensland Alliance Agr & Food Innovat, St Lucia, Qld, AustraliaUniv Queensland, Sch Biomed Sci, Brisbane, Qld, AustraliaUniv Calif Davis, Dept Anim Sci, Davis, CA 95616 USAUniv Estadual Paulista, Dept Zootecnia, Fac Ciencias Agr & Vet, Sao Paulo, BrazilColorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USAUniv Estadual Paulista, Dept Zootecnia, Fac Ciencias Agr & Vet, Sao Paulo, BrazilFrontiers Media SaUniv QueenslandVietnam Natl Univ AgrCSIRO Agr & FoodUniv GuelphUniv Calif DavisUniversidade Estadual Paulista (Unesp)Colorado State UnivNguyen, Loan T.Reverter, AntonioCanovas, AngelaVenus, BronwynAnderson, Stephen T.Islas-Trejo, AlmaDias, Marina M. [UNESP]Crawford, Natalie F.Lehnert, Sigrid A.Medrano, Juan F.Thomas, Milt G.Moore, Stephen S.Fortes, Marina R. S.2018-11-26T15:47:44Z2018-11-26T15:47:44Z2018-03-20info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article13application/pdfhttp://dx.doi.org/10.3389/fgene.2018.00087Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018.1664-8021http://hdl.handle.net/11449/16017010.3389/fgene.2018.00087WOS:000427888900001WOS000427888900001.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Genetics2,274info:eu-repo/semantics/openAccess2023-10-27T06:09:22Zoai:repositorio.unesp.br:11449/160170Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:09:41.263341Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
spellingShingle |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers Nguyen, Loan T. Bos indicus puberty gene expression RNA sequencing gene network liver |
title_short |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_full |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_fullStr |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_full_unstemmed |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
title_sort |
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers |
author |
Nguyen, Loan T. |
author_facet |
Nguyen, Loan T. Reverter, Antonio Canovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. [UNESP] Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. |
author_role |
author |
author2 |
Reverter, Antonio Canovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. [UNESP] Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. |
author2_role |
author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Univ Queensland Vietnam Natl Univ Agr CSIRO Agr & Food Univ Guelph Univ Calif Davis Universidade Estadual Paulista (Unesp) Colorado State Univ |
dc.contributor.author.fl_str_mv |
Nguyen, Loan T. Reverter, Antonio Canovas, Angela Venus, Bronwyn Anderson, Stephen T. Islas-Trejo, Alma Dias, Marina M. [UNESP] Crawford, Natalie F. Lehnert, Sigrid A. Medrano, Juan F. Thomas, Milt G. Moore, Stephen S. Fortes, Marina R. S. |
dc.subject.por.fl_str_mv |
Bos indicus puberty gene expression RNA sequencing gene network liver |
topic |
Bos indicus puberty gene expression RNA sequencing gene network liver |
description |
The liver plays a central role in metabolism and produces important hormones. Hepatic estrogen receptors and the release of insulin-like growth factor 1 (IGF1) are critical links between liver function and the reproductive system. However, the role of liver in pubertal development is not fully understood. To explore this question, we applied transcriptomic analyses to liver samples of pre- and post-pubertal Brahman heifers and identified differentially expressed (DE) genes and genes encoding transcription factors (TFs). Differential expression of genes suggests potential biological mechanisms and pathways linking liver function to puberty. The analyses identified 452 DE genes and 82 TF with significant contribution to differential gene expression by using a regulatory impact factor metric. Brain-derived neurotrophic factor was observed as the most down-regulated gene (P = 0.003) in post-pubertal heifers and we propose this gene influences pubertal development in Brahman heifers. Additionally, co-expression network analysis provided evidence for three TF as key regulators of liver function during pubertal development: the signal transducer and activator of transcription 6, PBX homeobox 2, and polybromo 1. Pathway enrichment analysis identified transforming growth factor-beta and Wnt signaling pathways as significant annotation terms for the list of DE genes and TF in the co-expression network. Molecular information regarding genes and pathways described in this work are important to further our understanding of puberty onset in Brahman heifers. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-11-26T15:47:44Z 2018-11-26T15:47:44Z 2018-03-20 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3389/fgene.2018.00087 Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018. 1664-8021 http://hdl.handle.net/11449/160170 10.3389/fgene.2018.00087 WOS:000427888900001 WOS000427888900001.pdf |
url |
http://dx.doi.org/10.3389/fgene.2018.00087 http://hdl.handle.net/11449/160170 |
identifier_str_mv |
Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 9, 13 p., 2018. 1664-8021 10.3389/fgene.2018.00087 WOS:000427888900001 WOS000427888900001.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Frontiers In Genetics 2,274 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
13 application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media Sa |
publisher.none.fl_str_mv |
Frontiers Media Sa |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808128612312809472 |