Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1186/s12862-017-1113-x http://hdl.handle.net/11449/179503 |
Resumo: | Background: Neo-sex chromosome systems arose independently multiple times in evolution, presenting the remarkable characteristic of repetitive DNAs accumulation. Among grasshoppers, occurrence of neo-XY was repeatedly noticed in Melanoplinae. Here we analyzed the most abundant tandem repeats of R. bergii (2n = 22, neo-XY♂) using deep Illumina sequencing and graph-based clustering in order to address the neo-sex chromosomes evolution. Results: The analyses revealed ten families of satDNAs comprising about ~1% of the male genome, which occupied mainly C-positive regions of autosomes. Regarding the sex chromosomes, satDNAs were recorded within centromeric or interstitial regions of the neo-X chromosome and four satDNAs occurred in the neo-Y, two of them being exclusive (Rber248 and Rber299). Using a combination of probes we uncovered five well-defined cytological variants for neo-Y, originated by multiple paracentric inversions and satDNA amplification, besides fragmented neo-Y. These neo-Y variants were distinct in frequency between embryos and adult males. Conclusions: The genomic data together with cytogenetic mapping enabled us to better understand the neo-sex chromosome dynamics in grasshoppers, reinforcing differentiation of neo-X and neo-Y and revealing the occurrence of multiple additional rearrangements involved in the neo-Y evolution of R. bergii. We discussed the possible causes that led to differences in frequency for the neo-Y variants between embryos and adults. Finally we hypothesize about the role of DNA satellites in R. bergii as well as putative historical events involved in the evolution of the R. bergii neo-XY. |
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Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysisChromosomal rearrangementsEvolutionFISHSatellite DNASex chromosomeBackground: Neo-sex chromosome systems arose independently multiple times in evolution, presenting the remarkable characteristic of repetitive DNAs accumulation. Among grasshoppers, occurrence of neo-XY was repeatedly noticed in Melanoplinae. Here we analyzed the most abundant tandem repeats of R. bergii (2n = 22, neo-XY♂) using deep Illumina sequencing and graph-based clustering in order to address the neo-sex chromosomes evolution. Results: The analyses revealed ten families of satDNAs comprising about ~1% of the male genome, which occupied mainly C-positive regions of autosomes. Regarding the sex chromosomes, satDNAs were recorded within centromeric or interstitial regions of the neo-X chromosome and four satDNAs occurred in the neo-Y, two of them being exclusive (Rber248 and Rber299). Using a combination of probes we uncovered five well-defined cytological variants for neo-Y, originated by multiple paracentric inversions and satDNA amplification, besides fragmented neo-Y. These neo-Y variants were distinct in frequency between embryos and adult males. Conclusions: The genomic data together with cytogenetic mapping enabled us to better understand the neo-sex chromosome dynamics in grasshoppers, reinforcing differentiation of neo-X and neo-Y and revealing the occurrence of multiple additional rearrangements involved in the neo-Y evolution of R. bergii. We discussed the possible causes that led to differences in frequency for the neo-Y variants between embryos and adults. Finally we hypothesize about the role of DNA satellites in R. bergii as well as putative historical events involved in the evolution of the R. bergii neo-XY.Departamento de Biologia UNESP-Univ Estadual Paulista Instituto de Biociências/IBProgram in Molecular and Integrative Physiological Sciences Department of Environmental Health Harvard University T. H. Chan School of Public HealthIBS UNaM CONICETDepartamento de Morfologia UNESP-Univ Estadual Paulista Instituto de Biociências/IBDepartamento de Biologia UNESP-Univ Estadual Paulista Instituto de Biociências/IBDepartamento de Morfologia UNESP-Univ Estadual Paulista Instituto de Biociências/IBUniversidade Estadual Paulista (Unesp)T. H. Chan School of Public HealthCONICETPalacios-Gimenez, Octavio M. [UNESP]Milani, Diogo [UNESP]Lemos, BernardoCastillo, Elio R.Martí, Dardo A.Ramos, Erica [UNESP]Martins, Cesar [UNESP]Cabral-De-Mello, Diogo C. [UNESP]2018-12-11T17:35:26Z2018-12-11T17:35:26Z2018-01-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1186/s12862-017-1113-xBMC Evolutionary Biology, v. 18, n. 1, 2018.1471-2148http://hdl.handle.net/11449/17950310.1186/s12862-017-1113-x2-s2.0-850405229882-s2.0-85040522988.pdf88588006994253520000-0003-3534-974XScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Evolutionary Biology1,656info:eu-repo/semantics/openAccess2024-01-06T06:23:24Zoai:repositorio.unesp.br:11449/179503Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:13:52.095267Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
title |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
spellingShingle |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis Palacios-Gimenez, Octavio M. [UNESP] Chromosomal rearrangements Evolution FISH Satellite DNA Sex chromosome |
title_short |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
title_full |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
title_fullStr |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
title_full_unstemmed |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
title_sort |
Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis |
author |
Palacios-Gimenez, Octavio M. [UNESP] |
author_facet |
Palacios-Gimenez, Octavio M. [UNESP] Milani, Diogo [UNESP] Lemos, Bernardo Castillo, Elio R. Martí, Dardo A. Ramos, Erica [UNESP] Martins, Cesar [UNESP] Cabral-De-Mello, Diogo C. [UNESP] |
author_role |
author |
author2 |
Milani, Diogo [UNESP] Lemos, Bernardo Castillo, Elio R. Martí, Dardo A. Ramos, Erica [UNESP] Martins, Cesar [UNESP] Cabral-De-Mello, Diogo C. [UNESP] |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) T. H. Chan School of Public Health CONICET |
dc.contributor.author.fl_str_mv |
Palacios-Gimenez, Octavio M. [UNESP] Milani, Diogo [UNESP] Lemos, Bernardo Castillo, Elio R. Martí, Dardo A. Ramos, Erica [UNESP] Martins, Cesar [UNESP] Cabral-De-Mello, Diogo C. [UNESP] |
dc.subject.por.fl_str_mv |
Chromosomal rearrangements Evolution FISH Satellite DNA Sex chromosome |
topic |
Chromosomal rearrangements Evolution FISH Satellite DNA Sex chromosome |
description |
Background: Neo-sex chromosome systems arose independently multiple times in evolution, presenting the remarkable characteristic of repetitive DNAs accumulation. Among grasshoppers, occurrence of neo-XY was repeatedly noticed in Melanoplinae. Here we analyzed the most abundant tandem repeats of R. bergii (2n = 22, neo-XY♂) using deep Illumina sequencing and graph-based clustering in order to address the neo-sex chromosomes evolution. Results: The analyses revealed ten families of satDNAs comprising about ~1% of the male genome, which occupied mainly C-positive regions of autosomes. Regarding the sex chromosomes, satDNAs were recorded within centromeric or interstitial regions of the neo-X chromosome and four satDNAs occurred in the neo-Y, two of them being exclusive (Rber248 and Rber299). Using a combination of probes we uncovered five well-defined cytological variants for neo-Y, originated by multiple paracentric inversions and satDNA amplification, besides fragmented neo-Y. These neo-Y variants were distinct in frequency between embryos and adult males. Conclusions: The genomic data together with cytogenetic mapping enabled us to better understand the neo-sex chromosome dynamics in grasshoppers, reinforcing differentiation of neo-X and neo-Y and revealing the occurrence of multiple additional rearrangements involved in the neo-Y evolution of R. bergii. We discussed the possible causes that led to differences in frequency for the neo-Y variants between embryos and adults. Finally we hypothesize about the role of DNA satellites in R. bergii as well as putative historical events involved in the evolution of the R. bergii neo-XY. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-12-11T17:35:26Z 2018-12-11T17:35:26Z 2018-01-08 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1186/s12862-017-1113-x BMC Evolutionary Biology, v. 18, n. 1, 2018. 1471-2148 http://hdl.handle.net/11449/179503 10.1186/s12862-017-1113-x 2-s2.0-85040522988 2-s2.0-85040522988.pdf 8858800699425352 0000-0003-3534-974X |
url |
http://dx.doi.org/10.1186/s12862-017-1113-x http://hdl.handle.net/11449/179503 |
identifier_str_mv |
BMC Evolutionary Biology, v. 18, n. 1, 2018. 1471-2148 10.1186/s12862-017-1113-x 2-s2.0-85040522988 2-s2.0-85040522988.pdf 8858800699425352 0000-0003-3534-974X |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
BMC Evolutionary Biology 1,656 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
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UNESP |
reponame_str |
Repositório Institucional da UNESP |
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Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
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