How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach
Autor(a) principal: | |
---|---|
Data de Publicação: | 2021 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.funbio.2021.05.007 http://hdl.handle.net/11449/207869 |
Resumo: | This study aimed to model mycelial growth in a factorial experiment with two species of white rot fungi growing at five temperatures. The nonlinear models evaluated were logistic, Gompertz, Weibull and von Bertalanffy. The adjustments were performed first by evaluating the fixed and mixed-effects models with random effects, added to the fixed parameters. Then, the best adjusted model was improved by an adequated covariance structure, and dummy variables were added to the parameters asymptote (α) and abscissa of the inflection point (β) in the model in order to verify the effect of the experiment factors, species and temperatures on the regression parameters. The criteria used to compare models were residual variance and Akaike information criterion. Gompertz and von Bertalanffy mixed-effects models were better adjusted. The parameters differed between species. Moreover, the linear and quadratic effects of temperature evaluated in each species were significant. The models were reparametrized in order to consider two parameters of interest: velocity (μ) at the inflection point and lag time (λ). The maximum growth velocity was obtained at 25.4 °C by S. ostrea, while T. villosa was achieved at 30.5 °C; both fungi suffered less lag time by increasing the temperature. |
id |
UNSP_f4f5e6038ad3264de5a3c54837a492f8 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/207869 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approachDummy variablesGompertzLogisticvon BertalanffyWeibullThis study aimed to model mycelial growth in a factorial experiment with two species of white rot fungi growing at five temperatures. The nonlinear models evaluated were logistic, Gompertz, Weibull and von Bertalanffy. The adjustments were performed first by evaluating the fixed and mixed-effects models with random effects, added to the fixed parameters. Then, the best adjusted model was improved by an adequated covariance structure, and dummy variables were added to the parameters asymptote (α) and abscissa of the inflection point (β) in the model in order to verify the effect of the experiment factors, species and temperatures on the regression parameters. The criteria used to compare models were residual variance and Akaike information criterion. Gompertz and von Bertalanffy mixed-effects models were better adjusted. The parameters differed between species. Moreover, the linear and quadratic effects of temperature evaluated in each species were significant. The models were reparametrized in order to consider two parameters of interest: velocity (μ) at the inflection point and lag time (λ). The maximum growth velocity was obtained at 25.4 °C by S. ostrea, while T. villosa was achieved at 30.5 °C; both fungi suffered less lag time by increasing the temperature.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Plant Protection Department College of Agricultural Sciences (FCA) Lageado Experimental Farm São Paulo State University (UNESP)Bioestatistic Plant Biology Parasitology and Zoology Department Bioscience Institute (IBB) Universidade Estadual Paulista (UNESP)Plant Protection Department College of Agricultural Sciences (FCA) Lageado Experimental Farm São Paulo State University (UNESP)Bioestatistic Plant Biology Parasitology and Zoology Department Bioscience Institute (IBB) Universidade Estadual Paulista (UNESP)FAPESP: 2013/15747–4Universidade Estadual Paulista (Unesp)Negrão, Djanira Rodrigues [UNESP]Mischan, Martha Maria [UNESP]de Pinho, Sheila Zambello [UNESP]de Carvalho, Lídia Raquel [UNESP]Gomes, Rafaela Lanças [UNESP]de Souza Passos, José Raimundo [UNESP]2021-06-25T11:02:25Z2021-06-25T11:02:25Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.funbio.2021.05.007Fungal Biology.1878-6146http://hdl.handle.net/11449/20786910.1016/j.funbio.2021.05.0072-s2.0-85107804252Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFungal Biologyinfo:eu-repo/semantics/openAccess2024-10-14T19:56:23Zoai:repositorio.unesp.br:11449/207869Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-10-14T19:56:23Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
title |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
spellingShingle |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach Negrão, Djanira Rodrigues [UNESP] Dummy variables Gompertz Logistic von Bertalanffy Weibull |
title_short |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
title_full |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
title_fullStr |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
title_full_unstemmed |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
title_sort |
How temperature variation affects white-rot fungi mycelial growth dynamics: A nonlinear mixed models approach |
author |
Negrão, Djanira Rodrigues [UNESP] |
author_facet |
Negrão, Djanira Rodrigues [UNESP] Mischan, Martha Maria [UNESP] de Pinho, Sheila Zambello [UNESP] de Carvalho, Lídia Raquel [UNESP] Gomes, Rafaela Lanças [UNESP] de Souza Passos, José Raimundo [UNESP] |
author_role |
author |
author2 |
Mischan, Martha Maria [UNESP] de Pinho, Sheila Zambello [UNESP] de Carvalho, Lídia Raquel [UNESP] Gomes, Rafaela Lanças [UNESP] de Souza Passos, José Raimundo [UNESP] |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Negrão, Djanira Rodrigues [UNESP] Mischan, Martha Maria [UNESP] de Pinho, Sheila Zambello [UNESP] de Carvalho, Lídia Raquel [UNESP] Gomes, Rafaela Lanças [UNESP] de Souza Passos, José Raimundo [UNESP] |
dc.subject.por.fl_str_mv |
Dummy variables Gompertz Logistic von Bertalanffy Weibull |
topic |
Dummy variables Gompertz Logistic von Bertalanffy Weibull |
description |
This study aimed to model mycelial growth in a factorial experiment with two species of white rot fungi growing at five temperatures. The nonlinear models evaluated were logistic, Gompertz, Weibull and von Bertalanffy. The adjustments were performed first by evaluating the fixed and mixed-effects models with random effects, added to the fixed parameters. Then, the best adjusted model was improved by an adequated covariance structure, and dummy variables were added to the parameters asymptote (α) and abscissa of the inflection point (β) in the model in order to verify the effect of the experiment factors, species and temperatures on the regression parameters. The criteria used to compare models were residual variance and Akaike information criterion. Gompertz and von Bertalanffy mixed-effects models were better adjusted. The parameters differed between species. Moreover, the linear and quadratic effects of temperature evaluated in each species were significant. The models were reparametrized in order to consider two parameters of interest: velocity (μ) at the inflection point and lag time (λ). The maximum growth velocity was obtained at 25.4 °C by S. ostrea, while T. villosa was achieved at 30.5 °C; both fungi suffered less lag time by increasing the temperature. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T11:02:25Z 2021-06-25T11:02:25Z 2021-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.funbio.2021.05.007 Fungal Biology. 1878-6146 http://hdl.handle.net/11449/207869 10.1016/j.funbio.2021.05.007 2-s2.0-85107804252 |
url |
http://dx.doi.org/10.1016/j.funbio.2021.05.007 http://hdl.handle.net/11449/207869 |
identifier_str_mv |
Fungal Biology. 1878-6146 10.1016/j.funbio.2021.05.007 2-s2.0-85107804252 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Fungal Biology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1826304042785046528 |