In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.18671/scifor.v47n123.16 http://hdl.handle.net/11449/198134 |
Resumo: | The Pinus genus covers a wide variety of widely cultivated species due to adaptability, high growth and wood quality. Molecular markers have been used for many genetic analyses, and among them, the microsatellite markers (SSR) have several applications and can be found in chloroplast genome (cpDNA) as well as in nuclear genomes (ntDNA). The chloroplast microsatellites markers (cpSSR) can be used for gene flow analysis, identification of hybrids,clones, paternity tests, genetic diversity studies, phylogenetic analysis, among others. The work aimed to characterize the cpSSRs of Pinus species with cpDNA sequenced and deposited in NCBI (National Center for Biotechnology Information). In the twenty species of Pinus spp. studied, 1.542 cpSSRs were identified, with 86,45% of mononucleotide type, and the less frequent the penta- (1.10%) and hexanucleotide (1.04%) types. Predominated cpSSRs in non-coding regions (intergenic). The results indicate presence of a wide range of cpSSR for Pinus spp., which can subsidize breeding programs of interesting species. |
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In silico analysis of Pinus L. Chloroplast DNA to microsatellites regionsCpDNACpSSRForest improvementGenetical improvementThe Pinus genus covers a wide variety of widely cultivated species due to adaptability, high growth and wood quality. Molecular markers have been used for many genetic analyses, and among them, the microsatellite markers (SSR) have several applications and can be found in chloroplast genome (cpDNA) as well as in nuclear genomes (ntDNA). The chloroplast microsatellites markers (cpSSR) can be used for gene flow analysis, identification of hybrids,clones, paternity tests, genetic diversity studies, phylogenetic analysis, among others. The work aimed to characterize the cpSSRs of Pinus species with cpDNA sequenced and deposited in NCBI (National Center for Biotechnology Information). In the twenty species of Pinus spp. studied, 1.542 cpSSRs were identified, with 86,45% of mononucleotide type, and the less frequent the penta- (1.10%) and hexanucleotide (1.04%) types. Predominated cpSSRs in non-coding regions (intergenic). The results indicate presence of a wide range of cpSSR for Pinus spp., which can subsidize breeding programs of interesting species.Faculty of Agronomic Sciences Universidade Estadual Paulista “Júlio de Mesquita Filho” UnespCenter for Molecular Biology and Genetic Engineering Universidade Estadual de Campinas – UnicampForestry Department Universidade Estadual do Centro Oeste – Unicentro.Forestry Department Universidade Federal de São Carlos - UFSCarFaculty of Agronomic Sciences Universidade Estadual Paulista “Júlio de Mesquita Filho” UnespUniversidade Estadual Paulista (Unesp)Universidade Estadual de Campinas (UNICAMP)Universidade Estadual do Centro Oeste – Unicentro.Universidade Federal de São Carlos (UFSCar)Moro, Michele [UNESP]Pereira, Fernanda Bortolanza [UNESP]Filho, Jaire Alves FerreiraPerek, MatheusBandeira Peres, Fabiana Schmidtde Assis Furquim, GabrielTambarussi, Evandro Vagner2020-12-12T01:00:08Z2020-12-12T01:00:08Z2019-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article545-551http://dx.doi.org/10.18671/scifor.v47n123.16Scientia Forestalis/Forest Sciences, v. 47, n. 123, p. 545-551, 2019.1413-9324http://hdl.handle.net/11449/19813410.18671/scifor.v47n123.162-s2.0-85074892464Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientia Forestalis/Forest Sciencesinfo:eu-repo/semantics/openAccess2021-10-23T08:59:53Zoai:repositorio.unesp.br:11449/198134Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:01:32.722363Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
title |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
spellingShingle |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions Moro, Michele [UNESP] CpDNA CpSSR Forest improvement Genetical improvement |
title_short |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
title_full |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
title_fullStr |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
title_full_unstemmed |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
title_sort |
In silico analysis of Pinus L. Chloroplast DNA to microsatellites regions |
author |
Moro, Michele [UNESP] |
author_facet |
Moro, Michele [UNESP] Pereira, Fernanda Bortolanza [UNESP] Filho, Jaire Alves Ferreira Perek, Matheus Bandeira Peres, Fabiana Schmidt de Assis Furquim, Gabriel Tambarussi, Evandro Vagner |
author_role |
author |
author2 |
Pereira, Fernanda Bortolanza [UNESP] Filho, Jaire Alves Ferreira Perek, Matheus Bandeira Peres, Fabiana Schmidt de Assis Furquim, Gabriel Tambarussi, Evandro Vagner |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade Estadual de Campinas (UNICAMP) Universidade Estadual do Centro Oeste – Unicentro. Universidade Federal de São Carlos (UFSCar) |
dc.contributor.author.fl_str_mv |
Moro, Michele [UNESP] Pereira, Fernanda Bortolanza [UNESP] Filho, Jaire Alves Ferreira Perek, Matheus Bandeira Peres, Fabiana Schmidt de Assis Furquim, Gabriel Tambarussi, Evandro Vagner |
dc.subject.por.fl_str_mv |
CpDNA CpSSR Forest improvement Genetical improvement |
topic |
CpDNA CpSSR Forest improvement Genetical improvement |
description |
The Pinus genus covers a wide variety of widely cultivated species due to adaptability, high growth and wood quality. Molecular markers have been used for many genetic analyses, and among them, the microsatellite markers (SSR) have several applications and can be found in chloroplast genome (cpDNA) as well as in nuclear genomes (ntDNA). The chloroplast microsatellites markers (cpSSR) can be used for gene flow analysis, identification of hybrids,clones, paternity tests, genetic diversity studies, phylogenetic analysis, among others. The work aimed to characterize the cpSSRs of Pinus species with cpDNA sequenced and deposited in NCBI (National Center for Biotechnology Information). In the twenty species of Pinus spp. studied, 1.542 cpSSRs were identified, with 86,45% of mononucleotide type, and the less frequent the penta- (1.10%) and hexanucleotide (1.04%) types. Predominated cpSSRs in non-coding regions (intergenic). The results indicate presence of a wide range of cpSSR for Pinus spp., which can subsidize breeding programs of interesting species. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-01-01 2020-12-12T01:00:08Z 2020-12-12T01:00:08Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.18671/scifor.v47n123.16 Scientia Forestalis/Forest Sciences, v. 47, n. 123, p. 545-551, 2019. 1413-9324 http://hdl.handle.net/11449/198134 10.18671/scifor.v47n123.16 2-s2.0-85074892464 |
url |
http://dx.doi.org/10.18671/scifor.v47n123.16 http://hdl.handle.net/11449/198134 |
identifier_str_mv |
Scientia Forestalis/Forest Sciences, v. 47, n. 123, p. 545-551, 2019. 1413-9324 10.18671/scifor.v47n123.16 2-s2.0-85074892464 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Scientia Forestalis/Forest Sciences |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
545-551 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128740698357760 |