Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)

Detalhes bibliográficos
Autor(a) principal: Carneiro, F. S. [UNESP]
Data de Publicação: 2012
Outros Autores: Lacerda, A. E. B., Lemes, M. R., Gribel, R., Kanashiro, M., Sebbenn, A. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.4238/2012.July.19.13
http://hdl.handle.net/11449/42662
Resumo: The Neotropical tree Hymenaea courbaril, locally known as Jatoba, is a valuable source of lumber and also produces comestible and medicinal fruit. We characterized Mendelian inheritance, linkage and genotypic disequilibrium at nine microsatellite loci isolated from H. courbaril, in order to determine if they would provide accurate estimates of population genetic parameters of this important Amazon species. The study was made on 250 open-pollinated offspring originated from 14 seed trees. Only one of nine loci presented significant deviation from the expected Mendelian segregation (1: 1). Genotypic disequilibrium between pairwise loci was investigated based on samples from 55 adult and 56 juvenile trees. No genetic linkage between any paired loci was observed. After Bonferroni's corrections for multiple tests, we found no evidence of genotypic disequilibrium between pairs of loci. We conclude that this set of loci can be used for genetic diversity/structure, mating system, gene flow, and parentage analyses in H. courbaril populations.
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spelling Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)Brazilian AmazonHymenaea courbarilSSR lociMendelian inheritanceNeotropical treePopulation geneticsThe Neotropical tree Hymenaea courbaril, locally known as Jatoba, is a valuable source of lumber and also produces comestible and medicinal fruit. We characterized Mendelian inheritance, linkage and genotypic disequilibrium at nine microsatellite loci isolated from H. courbaril, in order to determine if they would provide accurate estimates of population genetic parameters of this important Amazon species. The study was made on 250 open-pollinated offspring originated from 14 seed trees. Only one of nine loci presented significant deviation from the expected Mendelian segregation (1: 1). Genotypic disequilibrium between pairwise loci was investigated based on samples from 55 adult and 56 juvenile trees. No genetic linkage between any paired loci was observed. After Bonferroni's corrections for multiple tests, we found no evidence of genotypic disequilibrium between pairs of loci. We conclude that this set of loci can be used for genetic diversity/structure, mating system, gene flow, and parentage analyses in H. courbaril populations.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)European Commission (SEEDSOURCE Project)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Inst Florestal São Paulo, São Paulo, BrazilInst Pesquisas Jardim Bot Rio de Janeiro, Inst Pesquisas, Rio de Janeiro, RJ, BrazilEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Amazonia Oriental, Belem, Para, BrazilUniv Estadual São Paulo Julio de Mesquita Filho, Fac Engn Ilha Solteira, Ilha Solteira, SP, BrazilEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Florestas, Curitiba, Parana, BrazilInst Nacl de Pesquisas da Amazonia, Lab Genet & Biol Reprodut Plantas LARGEN, Manaus, Amazonas, BrazilUniv Estadual São Paulo Julio de Mesquita Filho, Fac Engn Ilha Solteira, Ilha Solteira, SP, BrazilEuropean Commission (SEEDSOURCE Project): 003708CNPq: 2006/04490-9Funpec-editoraInst Florestal São PauloInst Pesquisas Jardim Bot Rio de JaneiroEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Universidade Estadual Paulista (Unesp)Inst Nacl de Pesquisas da AmazoniaCarneiro, F. S. [UNESP]Lacerda, A. E. B.Lemes, M. R.Gribel, R.Kanashiro, M.Sebbenn, A. M.2014-05-20T15:34:50Z2014-05-20T15:34:50Z2012-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1942-1948application/pdfhttp://dx.doi.org/10.4238/2012.July.19.13Genetics and Molecular Research. Ribeirao Preto: Funpec-editora, v. 11, n. 3, p. 1942-1948, 2012.1676-5680http://hdl.handle.net/11449/4266210.4238/2012.July.19.13WOS:000308817800014WOS000308817800014.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics and Molecular Research0,439info:eu-repo/semantics/openAccess2023-10-27T06:09:01Zoai:repositorio.unesp.br:11449/42662Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T16:09:00.573936Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
title Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
spellingShingle Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
Carneiro, F. S. [UNESP]
Brazilian Amazon
Hymenaea courbaril
SSR loci
Mendelian inheritance
Neotropical tree
Population genetics
title_short Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
title_full Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
title_fullStr Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
title_full_unstemmed Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
title_sort Mendelian inheritance, linkage and genotypic disequilibrium in microsatellite loci isolated from Hymenaea courbaril (Leguminosae)
author Carneiro, F. S. [UNESP]
author_facet Carneiro, F. S. [UNESP]
Lacerda, A. E. B.
Lemes, M. R.
Gribel, R.
Kanashiro, M.
Sebbenn, A. M.
author_role author
author2 Lacerda, A. E. B.
Lemes, M. R.
Gribel, R.
Kanashiro, M.
Sebbenn, A. M.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Inst Florestal São Paulo
Inst Pesquisas Jardim Bot Rio de Janeiro
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
Universidade Estadual Paulista (Unesp)
Inst Nacl de Pesquisas da Amazonia
dc.contributor.author.fl_str_mv Carneiro, F. S. [UNESP]
Lacerda, A. E. B.
Lemes, M. R.
Gribel, R.
Kanashiro, M.
Sebbenn, A. M.
dc.subject.por.fl_str_mv Brazilian Amazon
Hymenaea courbaril
SSR loci
Mendelian inheritance
Neotropical tree
Population genetics
topic Brazilian Amazon
Hymenaea courbaril
SSR loci
Mendelian inheritance
Neotropical tree
Population genetics
description The Neotropical tree Hymenaea courbaril, locally known as Jatoba, is a valuable source of lumber and also produces comestible and medicinal fruit. We characterized Mendelian inheritance, linkage and genotypic disequilibrium at nine microsatellite loci isolated from H. courbaril, in order to determine if they would provide accurate estimates of population genetic parameters of this important Amazon species. The study was made on 250 open-pollinated offspring originated from 14 seed trees. Only one of nine loci presented significant deviation from the expected Mendelian segregation (1: 1). Genotypic disequilibrium between pairwise loci was investigated based on samples from 55 adult and 56 juvenile trees. No genetic linkage between any paired loci was observed. After Bonferroni's corrections for multiple tests, we found no evidence of genotypic disequilibrium between pairs of loci. We conclude that this set of loci can be used for genetic diversity/structure, mating system, gene flow, and parentage analyses in H. courbaril populations.
publishDate 2012
dc.date.none.fl_str_mv 2012-01-01
2014-05-20T15:34:50Z
2014-05-20T15:34:50Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.4238/2012.July.19.13
Genetics and Molecular Research. Ribeirao Preto: Funpec-editora, v. 11, n. 3, p. 1942-1948, 2012.
1676-5680
http://hdl.handle.net/11449/42662
10.4238/2012.July.19.13
WOS:000308817800014
WOS000308817800014.pdf
url http://dx.doi.org/10.4238/2012.July.19.13
http://hdl.handle.net/11449/42662
identifier_str_mv Genetics and Molecular Research. Ribeirao Preto: Funpec-editora, v. 11, n. 3, p. 1942-1948, 2012.
1676-5680
10.4238/2012.July.19.13
WOS:000308817800014
WOS000308817800014.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics and Molecular Research
0,439
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1942-1948
application/pdf
dc.publisher.none.fl_str_mv Funpec-editora
publisher.none.fl_str_mv Funpec-editora
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808128612089462784

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