Lumen segmentation in magnetic resonance images of the carotid artery

Detalhes bibliográficos
Autor(a) principal: Jodas, Danilo Samuel
Data de Publicação: 2016
Outros Autores: Pereira, Aledir Silveira [UNESP], Tavares, Joao Manuel R. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.compbiomed.2016.10.021
http://hdl.handle.net/11449/165396
Resumo: Investigation of the carotid artery plays an important role in the diagnosis of cerebrovascular events. Segmentation of the lumen and vessel wall in Magnetic Resonance (MR) images is the first step towards evaluating any possible cardiovascular diseases like atherosclerosis. However, the automatic segmentation of the lumen is still a challenge due to the low quality of the images and the presence of other elements such as stenosis and malformations that compromise the accuracy of the results. In this article, a method to identify the location of the lumen without user interaction is presented. The proposed method uses the modified mean roundness to calculate the circularity index of the regions identified by the K-means algorithm and return the one with the maximum value, i.e. the potential lumen region. Then, an active contour is employed to refine the boundary of this region. The method achieved an average Dice coefficient of 0.78 +/- 0.14 and 0.61 +/- 0.21 in 181 3D-T1-weighted and 181 proton density-weighted MR images, respectively. The results show that this method is promising for the correct identification and location of the lumen even in images corrupted by noise.
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spelling Lumen segmentation in magnetic resonance images of the carotid arteryMagnetic Resonance ImagingK-means algorithmDeformable modelSubtractive clusteringCircularity indexInvestigation of the carotid artery plays an important role in the diagnosis of cerebrovascular events. Segmentation of the lumen and vessel wall in Magnetic Resonance (MR) images is the first step towards evaluating any possible cardiovascular diseases like atherosclerosis. However, the automatic segmentation of the lumen is still a challenge due to the low quality of the images and the presence of other elements such as stenosis and malformations that compromise the accuracy of the results. In this article, a method to identify the location of the lumen without user interaction is presented. The proposed method uses the modified mean roundness to calculate the circularity index of the regions identified by the K-means algorithm and return the one with the maximum value, i.e. the potential lumen region. Then, an active contour is employed to refine the boundary of this region. The method achieved an average Dice coefficient of 0.78 +/- 0.14 and 0.61 +/- 0.21 in 181 3D-T1-weighted and 181 proton density-weighted MR images, respectively. The results show that this method is promising for the correct identification and location of the lumen even in images corrupted by noise.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Project - SciTech - Science and Technology for Competitive and Sustainable Industries - by Programa Operacional Regional do Norte (NORTE) through Fundo Europeu de Desenvolvimento Regional (FEDER)Minist Educ Brazil, CAPES Fdn, BR-70040020 Brasilia, DF, BrazilUniv Estadual Paulista, Rua Cristovao Colombo,2265, BR-15054000 S J Do Rio Preto, BrazilUniv Porto, Fac Engn, Inst Ciencia & Inovacao Engn Mecan & Engn Ind, Rua Dr Roberto Frias,S-N, P-4200465 Oporto, PortugalUniv Estadual Paulista, Rua Cristovao Colombo,2265, BR-15054000 S J Do Rio Preto, BrazilCAPES: 0543/13-6Project - SciTech - Science and Technology for Competitive and Sustainable Industries - by Programa Operacional Regional do Norte (NORTE) through Fundo Europeu de Desenvolvimento Regional (FEDER): NORTE-01-0145-FEDER-000022Elsevier B.V.Minist Educ BrazilUniversidade Estadual Paulista (Unesp)Univ PortoJodas, Danilo SamuelPereira, Aledir Silveira [UNESP]Tavares, Joao Manuel R. S.2018-11-28T00:18:33Z2018-11-28T00:18:33Z2016-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article233-242application/pdfhttp://dx.doi.org/10.1016/j.compbiomed.2016.10.021Computers In Biology And Medicine. Oxford: Pergamon-elsevier Science Ltd, v. 79, p. 233-242, 2016.0010-4825http://hdl.handle.net/11449/16539610.1016/j.compbiomed.2016.10.021WOS:000389294700024WOS000389294700024.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengComputers In Biology And Medicine0,591info:eu-repo/semantics/openAccess2024-01-11T06:30:46Zoai:repositorio.unesp.br:11449/165396Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-01-11T06:30:46Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Lumen segmentation in magnetic resonance images of the carotid artery
title Lumen segmentation in magnetic resonance images of the carotid artery
spellingShingle Lumen segmentation in magnetic resonance images of the carotid artery
Jodas, Danilo Samuel
Magnetic Resonance Imaging
K-means algorithm
Deformable model
Subtractive clustering
Circularity index
title_short Lumen segmentation in magnetic resonance images of the carotid artery
title_full Lumen segmentation in magnetic resonance images of the carotid artery
title_fullStr Lumen segmentation in magnetic resonance images of the carotid artery
title_full_unstemmed Lumen segmentation in magnetic resonance images of the carotid artery
title_sort Lumen segmentation in magnetic resonance images of the carotid artery
author Jodas, Danilo Samuel
author_facet Jodas, Danilo Samuel
Pereira, Aledir Silveira [UNESP]
Tavares, Joao Manuel R. S.
author_role author
author2 Pereira, Aledir Silveira [UNESP]
Tavares, Joao Manuel R. S.
author2_role author
author
dc.contributor.none.fl_str_mv Minist Educ Brazil
Universidade Estadual Paulista (Unesp)
Univ Porto
dc.contributor.author.fl_str_mv Jodas, Danilo Samuel
Pereira, Aledir Silveira [UNESP]
Tavares, Joao Manuel R. S.
dc.subject.por.fl_str_mv Magnetic Resonance Imaging
K-means algorithm
Deformable model
Subtractive clustering
Circularity index
topic Magnetic Resonance Imaging
K-means algorithm
Deformable model
Subtractive clustering
Circularity index
description Investigation of the carotid artery plays an important role in the diagnosis of cerebrovascular events. Segmentation of the lumen and vessel wall in Magnetic Resonance (MR) images is the first step towards evaluating any possible cardiovascular diseases like atherosclerosis. However, the automatic segmentation of the lumen is still a challenge due to the low quality of the images and the presence of other elements such as stenosis and malformations that compromise the accuracy of the results. In this article, a method to identify the location of the lumen without user interaction is presented. The proposed method uses the modified mean roundness to calculate the circularity index of the regions identified by the K-means algorithm and return the one with the maximum value, i.e. the potential lumen region. Then, an active contour is employed to refine the boundary of this region. The method achieved an average Dice coefficient of 0.78 +/- 0.14 and 0.61 +/- 0.21 in 181 3D-T1-weighted and 181 proton density-weighted MR images, respectively. The results show that this method is promising for the correct identification and location of the lumen even in images corrupted by noise.
publishDate 2016
dc.date.none.fl_str_mv 2016-12-01
2018-11-28T00:18:33Z
2018-11-28T00:18:33Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.compbiomed.2016.10.021
Computers In Biology And Medicine. Oxford: Pergamon-elsevier Science Ltd, v. 79, p. 233-242, 2016.
0010-4825
http://hdl.handle.net/11449/165396
10.1016/j.compbiomed.2016.10.021
WOS:000389294700024
WOS000389294700024.pdf
url http://dx.doi.org/10.1016/j.compbiomed.2016.10.021
http://hdl.handle.net/11449/165396
identifier_str_mv Computers In Biology And Medicine. Oxford: Pergamon-elsevier Science Ltd, v. 79, p. 233-242, 2016.
0010-4825
10.1016/j.compbiomed.2016.10.021
WOS:000389294700024
WOS000389294700024.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Computers In Biology And Medicine
0,591
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 233-242
application/pdf
dc.publisher.none.fl_str_mv Elsevier B.V.
publisher.none.fl_str_mv Elsevier B.V.
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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