Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco

Detalhes bibliográficos
Autor(a) principal: SANTOS NETO, Miguel Arcanjo dos
Data de Publicação: 2008
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6409
Resumo: The surubim, Pseudoplatystoma corruscans, is one of the most important native fish species in South American hydrographic basins, especially in São Francisco River, where it is considered a top chain predator. Different aspects have contributed to the decline of this species populations, especially at the submedium São Francisco, thus raising the necessity of a restocking program to recover the resource. A basic principle in such programs is that a large number of unrelated wild fish should ideally be used as founders, when possible or, alternatively, a small number of unrelated wild fish with few genetic relatedness could be used. Therefore, the genetic structure of the founder stock constitutes an essencial information to the success of such programs. This project aimed to evaluate the genetic structure of the founder stock of the restocking program of surubim maintained by Chesf in Paulo Afonso city, through the use of microsatellite molecular markers. DNA of 80 breeders were genotyped for 5 different microsatellite markers. PCR products were separated by polyacrylamide gel electrophoresis stained with silver nitrate. Statistical analysis were carried out using GENEPOP software, in which parameters such as number of alleles (A), observed (Ho) and expected heterozygosities (He), Hardy-Weinberg deviation, linkage disequilibrium and inbreeding coefficient (FIS) were calculated. GenAlEx 6.1 was used to calculate the number of effective alleles and relatedness coefficient (rxy). Results showed that the number of alleles ranged between from 6 to 18 and the number of effective alleles, from 3.28 to 9.25. Average observed and expected heterozygosities were 0.63 and 0.84, respectively. All loci, except Pcor5, showed deviation from Hardy-Weinberg equilibrium (P<0,001). Average inbreeding coefficient (FIS) for the 5 loci was 0.24. The analysis of linkage disequilibrium, when corrected by Bonferroni, were significant for loci Pcor21 and Pcor10 (P<0.05). The average relatedness coefficient (rxy) was -0.008 for a total number of 2926 possible pairwise combinations. A great genetic diversity, expressed in number of alleles and in a low value of average relatedness, was obtained despite a deficit of heterozygotes was observed in this stock. Such deficit seems to reflect the strategy adopted in the composition of this stock, in which individuals caught at the medium and lower São Francisco River, separated by two dams, were mixed together. It is feasible to conclude that this founder stock retained genetic diversity comparable to those found in the wild stocks and could be used in a restocking program.
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spelling COIMBRA, Maria Raquel MouraDINIZ, Fábio MendonçaSCHWAMBORN, Silvia Helena LimaSEVERI, WilliamCORREIA , Eudes de Souzahttp://lattes.cnpq.br/4593571970751115SANTOS NETO, Miguel Arcanjo dos2017-02-16T16:50:10Z2008-07-29SANTOS NETO, Miguel Arcanjo dos. Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco. 2008. 57 f. Dissertação (Programa de Pós-Graduação em Recursos Pesqueiros e Aquicultura) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6409The surubim, Pseudoplatystoma corruscans, is one of the most important native fish species in South American hydrographic basins, especially in São Francisco River, where it is considered a top chain predator. Different aspects have contributed to the decline of this species populations, especially at the submedium São Francisco, thus raising the necessity of a restocking program to recover the resource. A basic principle in such programs is that a large number of unrelated wild fish should ideally be used as founders, when possible or, alternatively, a small number of unrelated wild fish with few genetic relatedness could be used. Therefore, the genetic structure of the founder stock constitutes an essencial information to the success of such programs. This project aimed to evaluate the genetic structure of the founder stock of the restocking program of surubim maintained by Chesf in Paulo Afonso city, through the use of microsatellite molecular markers. DNA of 80 breeders were genotyped for 5 different microsatellite markers. PCR products were separated by polyacrylamide gel electrophoresis stained with silver nitrate. Statistical analysis were carried out using GENEPOP software, in which parameters such as number of alleles (A), observed (Ho) and expected heterozygosities (He), Hardy-Weinberg deviation, linkage disequilibrium and inbreeding coefficient (FIS) were calculated. GenAlEx 6.1 was used to calculate the number of effective alleles and relatedness coefficient (rxy). Results showed that the number of alleles ranged between from 6 to 18 and the number of effective alleles, from 3.28 to 9.25. Average observed and expected heterozygosities were 0.63 and 0.84, respectively. All loci, except Pcor5, showed deviation from Hardy-Weinberg equilibrium (P<0,001). Average inbreeding coefficient (FIS) for the 5 loci was 0.24. The analysis of linkage disequilibrium, when corrected by Bonferroni, were significant for loci Pcor21 and Pcor10 (P<0.05). The average relatedness coefficient (rxy) was -0.008 for a total number of 2926 possible pairwise combinations. A great genetic diversity, expressed in number of alleles and in a low value of average relatedness, was obtained despite a deficit of heterozygotes was observed in this stock. Such deficit seems to reflect the strategy adopted in the composition of this stock, in which individuals caught at the medium and lower São Francisco River, separated by two dams, were mixed together. It is feasible to conclude that this founder stock retained genetic diversity comparable to those found in the wild stocks and could be used in a restocking program.Pseudoplatystoma corruscans (surubim) é um peixe encontrado nas principais bacias hidrográficas sul-americanas, sendo considerado o primeiro predador da bacia do Rio São Francisco. Diversos fatores vêm comprometendo seriamente as populações de surubim no São Francisco, especialmente no submédio, despertando a necessidade de se investir em programas de propagação artificial que recuperem este recurso. Uma premissa básica de tais programas é utilizar um grande número de indivíduos selvagens como estoque fundador, quando possível, ou alternativamente, um número menor de indivíduos selvagens, mas com pouca relação genética de parentesco. A estrutura genética do plantel de fundadores constitui, portanto, uma informação essencial para o sucesso de um programa de repovoamento. O presente trabalho objetivou avaliar a estrutura genética do plantel de fundadores do programa de repovoamento do surubim, a ser desenvolvido pela Chesf em Paulo Afonso, através da utilização de marcadores moleculares de microssatélite. DNA de 80 reprodutores foram analisados para 5 diferentes marcadores de microssatélite. Os produtos de PCR foram separados por eletroforese em gel de poliacrilamida corados com nitrato de prata. As análises estatísticas foram realizadas utilizando-se o programa computacional GENEPOP, onde parâmetros como número de alelos (A), heterozigosidades observada (Ho) e esperada (He), desvio do equilíbrio de Hardy-Weinberg, desequilíbrio de ligação e coeficiente de consangüinidade (FIS) foram calculados. O programa GenAlEx 6.1 foi utilizado para calcular o número de alelos efetivos e o estimador de relação genética (rxy). Os resultados mostraram que o número de alelos variou de 6 a 18 e o de alelos efetivos (Ae), de 3,28 a 9,25. As heterozigosidades médias observadas e esperadas encontradas foram de 0,63 e 0,84, respectivamente. Todos os loci, a exceção do Pcor5, mostraram desvio do equilíbrio de Hardy-Weinberg (P<0,001). O coeficiente de consangüinidade (FIS) médio calculado para os 5 loci foi de 0,24. As análises de desequilíbrio de ligação, quando corrigidas pelo método de Bonferroni, mostraram-se significativas apenas para os loci Pcor21 e Pcor10 (P<0,05). O valor médio do coeficiente de relação genética (rxy) foi de -0,008 para um total de 2926 combinações de possíveis casais. Uma grande diversidade alélica caracterizou o estoque fundador e, muito embora um déficit de heterozigotos tenha sido registrado, uma baixa relação de parentesco foi encontrada para o plantel em questão. Tal déficit parece refletir a estratégia de composição deste plantel em que indivíduos, oriundos do médio e do baixo São Francisco, separados por duas barragens, foram unidos. É possível concluir que o plantel fundador manteve uma diversidade alélica comparável àquela encontrada em estoques selvagens e poderá ser usado em um programa de repovoamento.Submitted by (edna.saturno@ufrpe.br) on 2017-02-16T16:50:10Z No. of bitstreams: 1 Miguel Arcanjo dos Santos Neto.pdf: 268842 bytes, checksum: ffc97fe7f597d810577265479d03c8e2 (MD5)Made available in DSpace on 2017-02-16T16:50:10Z (GMT). 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dc.title.por.fl_str_mv Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
title Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
spellingShingle Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
SANTOS NETO, Miguel Arcanjo dos
Surubim
Pseudoplatystoma corruscans
Reprodução artificial
Repovoamento
Microssatélite
Restocking program
Microsatellite
Relatedness
CIENCIAS AGRARIAS::RECURSOS PESQUEIROS E ENGENHARIA DE PESCA
title_short Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
title_full Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
title_fullStr Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
title_full_unstemmed Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
title_sort Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco
author SANTOS NETO, Miguel Arcanjo dos
author_facet SANTOS NETO, Miguel Arcanjo dos
author_role author
dc.contributor.advisor1.fl_str_mv COIMBRA, Maria Raquel Moura
dc.contributor.referee1.fl_str_mv DINIZ, Fábio Mendonça
dc.contributor.referee2.fl_str_mv SCHWAMBORN, Silvia Helena Lima
dc.contributor.referee3.fl_str_mv SEVERI, William
dc.contributor.referee4.fl_str_mv CORREIA , Eudes de Souza
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/4593571970751115
dc.contributor.author.fl_str_mv SANTOS NETO, Miguel Arcanjo dos
contributor_str_mv COIMBRA, Maria Raquel Moura
DINIZ, Fábio Mendonça
SCHWAMBORN, Silvia Helena Lima
SEVERI, William
CORREIA , Eudes de Souza
dc.subject.por.fl_str_mv Surubim
Pseudoplatystoma corruscans
Reprodução artificial
Repovoamento
Microssatélite
topic Surubim
Pseudoplatystoma corruscans
Reprodução artificial
Repovoamento
Microssatélite
Restocking program
Microsatellite
Relatedness
CIENCIAS AGRARIAS::RECURSOS PESQUEIROS E ENGENHARIA DE PESCA
dc.subject.eng.fl_str_mv Restocking program
Microsatellite
Relatedness
dc.subject.cnpq.fl_str_mv CIENCIAS AGRARIAS::RECURSOS PESQUEIROS E ENGENHARIA DE PESCA
description The surubim, Pseudoplatystoma corruscans, is one of the most important native fish species in South American hydrographic basins, especially in São Francisco River, where it is considered a top chain predator. Different aspects have contributed to the decline of this species populations, especially at the submedium São Francisco, thus raising the necessity of a restocking program to recover the resource. A basic principle in such programs is that a large number of unrelated wild fish should ideally be used as founders, when possible or, alternatively, a small number of unrelated wild fish with few genetic relatedness could be used. Therefore, the genetic structure of the founder stock constitutes an essencial information to the success of such programs. This project aimed to evaluate the genetic structure of the founder stock of the restocking program of surubim maintained by Chesf in Paulo Afonso city, through the use of microsatellite molecular markers. DNA of 80 breeders were genotyped for 5 different microsatellite markers. PCR products were separated by polyacrylamide gel electrophoresis stained with silver nitrate. Statistical analysis were carried out using GENEPOP software, in which parameters such as number of alleles (A), observed (Ho) and expected heterozygosities (He), Hardy-Weinberg deviation, linkage disequilibrium and inbreeding coefficient (FIS) were calculated. GenAlEx 6.1 was used to calculate the number of effective alleles and relatedness coefficient (rxy). Results showed that the number of alleles ranged between from 6 to 18 and the number of effective alleles, from 3.28 to 9.25. Average observed and expected heterozygosities were 0.63 and 0.84, respectively. All loci, except Pcor5, showed deviation from Hardy-Weinberg equilibrium (P<0,001). Average inbreeding coefficient (FIS) for the 5 loci was 0.24. The analysis of linkage disequilibrium, when corrected by Bonferroni, were significant for loci Pcor21 and Pcor10 (P<0.05). The average relatedness coefficient (rxy) was -0.008 for a total number of 2926 possible pairwise combinations. A great genetic diversity, expressed in number of alleles and in a low value of average relatedness, was obtained despite a deficit of heterozygotes was observed in this stock. Such deficit seems to reflect the strategy adopted in the composition of this stock, in which individuals caught at the medium and lower São Francisco River, separated by two dams, were mixed together. It is feasible to conclude that this founder stock retained genetic diversity comparable to those found in the wild stocks and could be used in a restocking program.
publishDate 2008
dc.date.issued.fl_str_mv 2008-07-29
dc.date.accessioned.fl_str_mv 2017-02-16T16:50:10Z
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dc.identifier.citation.fl_str_mv SANTOS NETO, Miguel Arcanjo dos. Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco. 2008. 57 f. Dissertação (Programa de Pós-Graduação em Recursos Pesqueiros e Aquicultura) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6409
identifier_str_mv SANTOS NETO, Miguel Arcanjo dos. Avaliação genética do estoque fundador de surubim, Pseudoplatystoma corruscans (Spix & Agassiz, 1829), para o repovoamento do submédio Rio São Francisco. 2008. 57 f. Dissertação (Programa de Pós-Graduação em Recursos Pesqueiros e Aquicultura) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6409
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dc.publisher.country.fl_str_mv Brasil
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