Modelagem estrutural em solução por métodos contínuos de solvatação

Detalhes bibliográficos
Autor(a) principal: LIMA, Filipe Belarmino de
Data de Publicação: 2016
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/7044
Resumo: In the first part of this work, several schemes for PCM method (Polarizable Continuum Model) calculations were employed within the Gaussian Program, with the purpose of suggesting more suitable and rational calculation protocols designed for organic systems involving the gauche effect. For this, the 1,2-dihaloethanes (DHEs) series (H2XC 􀀀 CXH2, where X = F, Cl, Br and I) were chosen as model systems as long as they are classical systems with well established experimental characterization of the gauche effect. Then, free energy solvation energies for the gauche and anti forms were theoretically determined in different solvents, two non polar (cyclohexane and CCl3), one weakly polar (CHCl4) and one very polar (DMSO). Several cavity models were tested. Two versions of the Gaussian Program, namely 2003 and 2009, and DFT-type quantum chemical methods (B3LYP and M05-2X) were employed with the following basis sets: 6-31g*, 6-31+g*, 6-311g*, 6-311+g*, cc-PVTZ and def2-TZV. The results have shown that the electrostatic portion of the solvation is dominant over the nonelectrostatic component, and furthermore the former defines alone the qualitative trend concerning the relative energies among the conformers. Yet, it was observed that the Pauling and Bondi radii models used for the cavity’s building were the most appropriate. Also, for the F, Cl and Br elements, the 6-31+g*, 6-311g* and 6-311+g* basis sets yielded better results. For iodine, it were used the LanL2DZ, CRENBL and SttutRLC pseudopotentials. The LanLD2Z one gave better results. In the second part of this work, aqua-complexes of trivalent lanthanide (Ln3+) ions in gas and water solution phases were studied, for the whole Ln series. After optimizing the geometries of the complexes in vacuum (isolated), calculations without structural relaxation were done in solution, using the cosmo continuum solvation model. The thermodynamics of the reaction [Ln(H2O)9]3+(aq) ! [Ln(H2O)8]3+(aq) + H2O was analysed. Up to moment, only semiempirical results, using the Sparkle model (AM1 and PM3) within the MOPAC Program, were obtained. DFT results are in progress.
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spelling BATISTA, Hélcio JoséSILVA, Juliana Angeiras Batista dahttp://lattes.cnpq.br/5496356160511534LIMA, Filipe Belarmino de2017-08-03T12:39:15Z2016-02-25LIMA, Filipe Belarmino de. Modelagem estrutural em solução por métodos contínuos de solvatação. 2016. 69 f. Dissertação (Programa de Pós-Graduação em Química) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/7044In the first part of this work, several schemes for PCM method (Polarizable Continuum Model) calculations were employed within the Gaussian Program, with the purpose of suggesting more suitable and rational calculation protocols designed for organic systems involving the gauche effect. For this, the 1,2-dihaloethanes (DHEs) series (H2XC 􀀀 CXH2, where X = F, Cl, Br and I) were chosen as model systems as long as they are classical systems with well established experimental characterization of the gauche effect. Then, free energy solvation energies for the gauche and anti forms were theoretically determined in different solvents, two non polar (cyclohexane and CCl3), one weakly polar (CHCl4) and one very polar (DMSO). Several cavity models were tested. Two versions of the Gaussian Program, namely 2003 and 2009, and DFT-type quantum chemical methods (B3LYP and M05-2X) were employed with the following basis sets: 6-31g*, 6-31+g*, 6-311g*, 6-311+g*, cc-PVTZ and def2-TZV. The results have shown that the electrostatic portion of the solvation is dominant over the nonelectrostatic component, and furthermore the former defines alone the qualitative trend concerning the relative energies among the conformers. Yet, it was observed that the Pauling and Bondi radii models used for the cavity’s building were the most appropriate. Also, for the F, Cl and Br elements, the 6-31+g*, 6-311g* and 6-311+g* basis sets yielded better results. For iodine, it were used the LanL2DZ, CRENBL and SttutRLC pseudopotentials. The LanLD2Z one gave better results. In the second part of this work, aqua-complexes of trivalent lanthanide (Ln3+) ions in gas and water solution phases were studied, for the whole Ln series. After optimizing the geometries of the complexes in vacuum (isolated), calculations without structural relaxation were done in solution, using the cosmo continuum solvation model. The thermodynamics of the reaction [Ln(H2O)9]3+(aq) ! [Ln(H2O)8]3+(aq) + H2O was analysed. Up to moment, only semiempirical results, using the Sparkle model (AM1 and PM3) within the MOPAC Program, were obtained. DFT results are in progress.Na primeira parte deste trabalho, foi realizado um estudo sistemático de vários esquemas de cálculo PCM (Polarizable Continuum Model) no Programa Gaussian com o intuito de propor protocolos mais otimizados para sistemas orgânicos envolvendo o efeito anomérico generalizado (efeito gauche). Para isto, foi escolhido como sistema modelo a série de 1,2-dihaloetanos (DHEs)(H2XC 􀀀 CXH2, onde X = F, Cl, Br e I), que são sistemas clássicos onde o efeito gauche está bem estabelecido do ponto de vista experimental. Desta forma, foram previstas teoricamente, energias livres de solvatação das formas gauche e anti para os DHEs, no vácuo e em quatro diferentes solventes, dois apolares (ciclohexano e CCl4), um pouco polar (CHCl3) e um bastante polar (DMSO). Vários modelos de cavidade foram testados. Foram utilizadas as versões 2003 (G03) e 2009 (G09) do Programa Gaussian, usando métodos químico-quânticos do tipo DFT (funcionais B3LYP e M05-2X) e para os seguintes conjuntos de base: 6-31g*, 6-31+g*, 6-311g*, 6-311+g*, cc-PVTZ e def2-TZV. Os modelos PCM utulizados foram IEFPCM, CPCM e SMD. Os resultados mostram primeiramente que a porção eletrostática da solvatação em comparação com a não eletrostática é dominante energeticamente, e é ela quem define, com certa margem de erro, a estabilidade relativa entre os confôrmeros. Os cálculos CPCM e IEFPCM deram resultados similares, sendo este último um pouco pior; o modelo SMD nao estimou bem a energia de solvatação. Foi observado que para a construção da cavidade os modelos de raio dos tipos Pauling e Bondi foram os mais satisfatórios dentre os analisados. As bases 6-31+g*, 6-311g* e 6-311+g* deram melhores resultados para F, Cl e Br. Para o iodo, utilizamos os pseudopotenciais LanL2DZ, CRENBL e StuttRLC. O pseudopotencial LanLD2Z deu melhores resultados. Na segunda parte, foram estudados os aquacomplexos de íons lantanídeos (Ln3+) trivalentes tanto em fase gás como em meio solvente (água), para a toda série Ln. Após os complexos terem suas geometrias otimizadas no vácuo (isolados), foram feitos cálculos destas estruturas em solvente utilizando o método COSMO, que é baseado no modelo contínuo de solvatação. Avaliamos a termodinâmica da reação [Ln(H2O)9]3+(aq) ! [Ln(H2O)8]3+(aq) + H2O. Até o momento, temos resultados semiempíricos, realizados no programa MOPAC utilizando o modelo Sparkle, e resultados parciais pelo método DFT estão em andamento.Submitted by Mario BC (mario@bc.ufrpe.br) on 2017-08-03T12:39:15Z No. of bitstreams: 1 Filipe Belarmino de Lima.pdf: 1077508 bytes, checksum: be493f1103ae1d168a318eacf37dd423 (MD5)Made available in DSpace on 2017-08-03T12:39:15Z (GMT). No. of bitstreams: 1 Filipe Belarmino de Lima.pdf: 1077508 bytes, checksum: be493f1103ae1d168a318eacf37dd423 (MD5) Previous issue date: 2016-02-25application/pdfporUniversidade Federal Rural de PernambucoPrograma de Pós-Graduação em QuímicaUFRPEBrasilDepartamento de QuímicaModelagem estruturalSolvataçãoCálculo PCMAquacomplexoLantanídeoCIENCIAS EXATAS E DA TERRA::QUIMICAModelagem estrutural em solução por métodos contínuos de solvataçãoinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis143564836222510089860060060038064160554570910301571700325303117195info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRPEinstname:Universidade Federal Rural de Pernambuco (UFRPE)instacron:UFRPELICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/7044/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51ORIGINALFilipe Belarmino de Lima.pdfFilipe Belarmino de Lima.pdfapplication/pdf1077508http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/7044/2/Filipe+Belarmino+de+Lima.pdfbe493f1103ae1d168a318eacf37dd423MD52tede2/70442017-08-03 09:39:15.682oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.tede2.ufrpe.br:8080/tede/PUBhttp://www.tede2.ufrpe.br:8080/oai/requestbdtd@ufrpe.br ||bdtd@ufrpe.bropendoar:2024-05-28T12:35:08.014393Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)false
dc.title.por.fl_str_mv Modelagem estrutural em solução por métodos contínuos de solvatação
title Modelagem estrutural em solução por métodos contínuos de solvatação
spellingShingle Modelagem estrutural em solução por métodos contínuos de solvatação
LIMA, Filipe Belarmino de
Modelagem estrutural
Solvatação
Cálculo PCM
Aquacomplexo
Lantanídeo
CIENCIAS EXATAS E DA TERRA::QUIMICA
title_short Modelagem estrutural em solução por métodos contínuos de solvatação
title_full Modelagem estrutural em solução por métodos contínuos de solvatação
title_fullStr Modelagem estrutural em solução por métodos contínuos de solvatação
title_full_unstemmed Modelagem estrutural em solução por métodos contínuos de solvatação
title_sort Modelagem estrutural em solução por métodos contínuos de solvatação
author LIMA, Filipe Belarmino de
author_facet LIMA, Filipe Belarmino de
author_role author
dc.contributor.advisor1.fl_str_mv BATISTA, Hélcio José
dc.contributor.advisor-co1.fl_str_mv SILVA, Juliana Angeiras Batista da
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/5496356160511534
dc.contributor.author.fl_str_mv LIMA, Filipe Belarmino de
contributor_str_mv BATISTA, Hélcio José
SILVA, Juliana Angeiras Batista da
dc.subject.por.fl_str_mv Modelagem estrutural
Solvatação
Cálculo PCM
Aquacomplexo
Lantanídeo
topic Modelagem estrutural
Solvatação
Cálculo PCM
Aquacomplexo
Lantanídeo
CIENCIAS EXATAS E DA TERRA::QUIMICA
dc.subject.cnpq.fl_str_mv CIENCIAS EXATAS E DA TERRA::QUIMICA
description In the first part of this work, several schemes for PCM method (Polarizable Continuum Model) calculations were employed within the Gaussian Program, with the purpose of suggesting more suitable and rational calculation protocols designed for organic systems involving the gauche effect. For this, the 1,2-dihaloethanes (DHEs) series (H2XC 􀀀 CXH2, where X = F, Cl, Br and I) were chosen as model systems as long as they are classical systems with well established experimental characterization of the gauche effect. Then, free energy solvation energies for the gauche and anti forms were theoretically determined in different solvents, two non polar (cyclohexane and CCl3), one weakly polar (CHCl4) and one very polar (DMSO). Several cavity models were tested. Two versions of the Gaussian Program, namely 2003 and 2009, and DFT-type quantum chemical methods (B3LYP and M05-2X) were employed with the following basis sets: 6-31g*, 6-31+g*, 6-311g*, 6-311+g*, cc-PVTZ and def2-TZV. The results have shown that the electrostatic portion of the solvation is dominant over the nonelectrostatic component, and furthermore the former defines alone the qualitative trend concerning the relative energies among the conformers. Yet, it was observed that the Pauling and Bondi radii models used for the cavity’s building were the most appropriate. Also, for the F, Cl and Br elements, the 6-31+g*, 6-311g* and 6-311+g* basis sets yielded better results. For iodine, it were used the LanL2DZ, CRENBL and SttutRLC pseudopotentials. The LanLD2Z one gave better results. In the second part of this work, aqua-complexes of trivalent lanthanide (Ln3+) ions in gas and water solution phases were studied, for the whole Ln series. After optimizing the geometries of the complexes in vacuum (isolated), calculations without structural relaxation were done in solution, using the cosmo continuum solvation model. The thermodynamics of the reaction [Ln(H2O)9]3+(aq) ! [Ln(H2O)8]3+(aq) + H2O was analysed. Up to moment, only semiempirical results, using the Sparkle model (AM1 and PM3) within the MOPAC Program, were obtained. DFT results are in progress.
publishDate 2016
dc.date.issued.fl_str_mv 2016-02-25
dc.date.accessioned.fl_str_mv 2017-08-03T12:39:15Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
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dc.identifier.citation.fl_str_mv LIMA, Filipe Belarmino de. Modelagem estrutural em solução por métodos contínuos de solvatação. 2016. 69 f. Dissertação (Programa de Pós-Graduação em Química) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/7044
identifier_str_mv LIMA, Filipe Belarmino de. Modelagem estrutural em solução por métodos contínuos de solvatação. 2016. 69 f. Dissertação (Programa de Pós-Graduação em Química) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/7044
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language por
dc.relation.program.fl_str_mv 1435648362225100898
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dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Química
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dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Departamento de Química
publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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