Caracterização citogenética e molecular em acessos do gênero Arachis

Detalhes bibliográficos
Autor(a) principal: MARTINS, Maria Isabel Gomes
Data de Publicação: 2010
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6475
Resumo: The Arachis genus has been the target of several studies due to its importance in human and animal food and because its seeds are recognized as source of protein and oil of vegetal origin, besides its use as ornamental plants. Arachis breeding programs have as main objective the introduction of new varieties and increase of genetic variability through crosses and selection to obtain important agronomic characters. Cytogenetic techniques such as conventional staining, chromosome banding with fluorochromes and FISH were used to analyze four species of Heteranthae: Arachis pusilla, A. giacomettii, A. dardani and A. sylvestris. All species had a diploid chromosome number 2n = 20, A. pusilla and A. dardani presented a karyotypic formula 18m + 2sm and satellite type 2, while A. giacomettii and A. sylvestris had 16m + 4sm and satellite type 10. Flumachromes CMA and DAPI revealed in A. pusilla a large number of blocks rich in Guanine and Cytosine, located in eight chromosomal pairs in the pericentromeric position. DAPI + blocks were observed in the proximal region in most chromosomes of the analyzed accesses of this species after the FISH technique. Arachis dardani presented two large subterranean CMA + blocks. A. giacomettii and A. dardani presented only two CMA + blocks, in the terminal region of the satelite chromosome pair. In situ hybridization demonstrated in A. giacomettii two hybridization signals in the terminal region of a chromosomal pair and in A. pusilla four 45S rDNA sites in two chromosomal pairs and two adjacent 5S rDNA sites. In A. giacomettii, two hybridization signals were visualized in the terminal region of a chromosomal pair, coinciding with the CMA + blocks, but not visualized, but 5S rDNA sites. For the molecular technique, 35 oligonucleotide primers from legume expression libraries were used, which were applied in two contrasting peanut lines, "BR1" and "LVIPE-06" accessions, commonly used in the formation of segregating populations. Objective of obtaining a panel of endonucleases recommended to generate polymorphic markers useful for the genetic improvement of peanuts or for genetic mapping purposes. From the total of oligonucleotide primers, three generated polymorphisms directly from PCR between the accesses investigated. Of the monomorphic amplicons, ten were purified, sequenced and aligned for the identification of candidate SNPs for the generation of restriction and conversion maps in molecular tags.
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spelling CARVALHO, Reginaldo deSANTOS, Roseane Cavalcanti dosMELO FILHO, Péricles de AlbuquerqueCAMARA, Terezinha de Jesus RangelOLIVEIRA, Maria Betânia Melo dehttp://lattes.cnpq.br/8446164424520637MARTINS, Maria Isabel Gomes2017-02-20T18:08:38Z2010-02-22MARTINS, Maria Isabel Gomes. Caracterização citogenética e molecular em acessos do gênero Arachis. 2010. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6475The Arachis genus has been the target of several studies due to its importance in human and animal food and because its seeds are recognized as source of protein and oil of vegetal origin, besides its use as ornamental plants. Arachis breeding programs have as main objective the introduction of new varieties and increase of genetic variability through crosses and selection to obtain important agronomic characters. Cytogenetic techniques such as conventional staining, chromosome banding with fluorochromes and FISH were used to analyze four species of Heteranthae: Arachis pusilla, A. giacomettii, A. dardani and A. sylvestris. All species had a diploid chromosome number 2n = 20, A. pusilla and A. dardani presented a karyotypic formula 18m + 2sm and satellite type 2, while A. giacomettii and A. sylvestris had 16m + 4sm and satellite type 10. Flumachromes CMA and DAPI revealed in A. pusilla a large number of blocks rich in Guanine and Cytosine, located in eight chromosomal pairs in the pericentromeric position. DAPI + blocks were observed in the proximal region in most chromosomes of the analyzed accesses of this species after the FISH technique. Arachis dardani presented two large subterranean CMA + blocks. A. giacomettii and A. dardani presented only two CMA + blocks, in the terminal region of the satelite chromosome pair. In situ hybridization demonstrated in A. giacomettii two hybridization signals in the terminal region of a chromosomal pair and in A. pusilla four 45S rDNA sites in two chromosomal pairs and two adjacent 5S rDNA sites. In A. giacomettii, two hybridization signals were visualized in the terminal region of a chromosomal pair, coinciding with the CMA + blocks, but not visualized, but 5S rDNA sites. For the molecular technique, 35 oligonucleotide primers from legume expression libraries were used, which were applied in two contrasting peanut lines, "BR1" and "LVIPE-06" accessions, commonly used in the formation of segregating populations. Objective of obtaining a panel of endonucleases recommended to generate polymorphic markers useful for the genetic improvement of peanuts or for genetic mapping purposes. From the total of oligonucleotide primers, three generated polymorphisms directly from PCR between the accesses investigated. Of the monomorphic amplicons, ten were purified, sequenced and aligned for the identification of candidate SNPs for the generation of restriction and conversion maps in molecular tags.O gênero Arachis tem sido alvo de diversos estudos devido à sua importância na alimentação humana e animal e por suas sementes serem reconhecidas como fonte de proteína e óleo de origem vegetal, além do seu uso como plantas ornamentais. Os programas de melhoramento genético de Arachis têm por objetivo principal a introdução de novas variedades e aumento da variabilidade genética via cruzamentos e seleção para obtenção de caracteres agronômicos importantes. Técnicas citogenéticas como coloração convencional, bandeamento cromossômico com fluorocromos e FISH foram empregadas para analisar quatro espécies da seção Heteranthae: Arachis pusilla, A. giacomettii, A. dardani e A. sylvestris. Todas as espécies apresentaram número cromossômico diplóide 2n=20, A. pusilla e A. dardani apresentaram fórmula cariotípica 18m+2sm e satélite tipo 2, enquanto que A. giacomettii e A. sylvestris possuem 16m+4sm e satélite tipo 10. A coloração com fluorocromos CMA e DAPI revelou em A. pusilla um grande número de blocos ricos em Guanina e Citosina, localizados em oito pares cromossômicos na posição pericentromérica. Blocos DAPI+ foram observados na região proximal na maioria dos cromossomos dos acessos analisados dessa espécie após a técnica de FISH. Arachis dardani apresentou dois grandes blocos subterminais CMA+. A. giacomettii e A. dardani apresentaram apenas dois blocos CMA+, na região terminal do par cromossômico satelitato. A técnica de Hibridização in situ evidenciou em A. giacomettii dois sinais de hibridização na região terminal de um par cromossômico e em A. pusilla quatro sítios de DNAr 45S em dois pares cromossômicos e dois sítios de DNAr 5S adjacentes. Já em A. giacomettii foram visualizados dois sinais de hibridização na região terminal de um par cromossômico, coincidindo com os blocos CMA+, não sendo visualizados, porém sítios DNAr 5S. Para a técnica de molecular foram utilizados 35 oligonucleotídeos iniciadores, provenientes de bibliotecas de expressão de leguminosas, estes foram aplicados em duas linhagens contrastantes de amendoim, acessos „BR1‟ e „LVIPE-06‟, comumente utilizados na formação de populações segregantes, com o objetivo de obter um painel de endonucleases recomendadas para gerar marcas polimórficas úteis ao melhoramento genético de amendoim ou para fins de mapeamento genético. Do total de oligonucleotídeos iniciadores, três geraram polimorfismos diretamente da PCR entre os acessos investigados. Dos amplicons monomórficos, dez foram purificados, sequenciados e alinhados para a identificação dos SNPs candidatos a geração dos mapas de restrição e conversão em marcas moleculares.Submitted by (ana.araujo@ufrpe.br) on 2017-02-20T18:08:38Z No. of bitstreams: 1 Maria Isabel Gomes Martins.pdf: 909875 bytes, checksum: 9a09e0cba454d77aa80b64325afc8841 (MD5)Made available in DSpace on 2017-02-20T18:08:38Z (GMT). No. of bitstreams: 1 Maria Isabel Gomes Martins.pdf: 909875 bytes, checksum: 9a09e0cba454d77aa80b64325afc8841 (MD5) Previous issue date: 2010-02-22Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqapplication/pdfporUniversidade Federal Rural de PernambucoPrograma de Pós-Graduação em Melhoramento Genético de PlantasUFRPEBrasilDepartamento de AgronomiaArachisHeteranthaeCitogenética molecularSequenciamentoFITOTECNIA::MELHORAMENTO VEGETALCaracterização citogenética e molecular em acessos do gênero Arachisinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesis-6234655866848882505600600600600-68005538799722292052615607299470131967-2555911436985713659info:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFRPEinstname:Universidade Federal Rural de Pernambuco (UFRPE)instacron:UFRPELICENSElicense.txtlicense.txttext/plain; charset=utf-82165http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6475/1/license.txtbd3efa91386c1718a7f26a329fdcb468MD51ORIGINALMaria Isabel Gomes Martins.pdfMaria Isabel Gomes Martins.pdfapplication/pdf909875http://www.tede2.ufrpe.br:8080/tede2/bitstream/tede2/6475/2/Maria+Isabel+Gomes+Martins.pdf9a09e0cba454d77aa80b64325afc8841MD52tede2/64752017-05-10 12:08:46.832oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttp://www.tede2.ufrpe.br:8080/tede/PUBhttp://www.tede2.ufrpe.br:8080/oai/requestbdtd@ufrpe.br ||bdtd@ufrpe.bropendoar:2024-05-28T12:34:23.563802Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)false
dc.title.por.fl_str_mv Caracterização citogenética e molecular em acessos do gênero Arachis
title Caracterização citogenética e molecular em acessos do gênero Arachis
spellingShingle Caracterização citogenética e molecular em acessos do gênero Arachis
MARTINS, Maria Isabel Gomes
Arachis
Heteranthae
Citogenética molecular
Sequenciamento
FITOTECNIA::MELHORAMENTO VEGETAL
title_short Caracterização citogenética e molecular em acessos do gênero Arachis
title_full Caracterização citogenética e molecular em acessos do gênero Arachis
title_fullStr Caracterização citogenética e molecular em acessos do gênero Arachis
title_full_unstemmed Caracterização citogenética e molecular em acessos do gênero Arachis
title_sort Caracterização citogenética e molecular em acessos do gênero Arachis
author MARTINS, Maria Isabel Gomes
author_facet MARTINS, Maria Isabel Gomes
author_role author
dc.contributor.advisor1.fl_str_mv CARVALHO, Reginaldo de
dc.contributor.advisor-co1.fl_str_mv SANTOS, Roseane Cavalcanti dos
dc.contributor.referee1.fl_str_mv MELO FILHO, Péricles de Albuquerque
dc.contributor.referee2.fl_str_mv CAMARA, Terezinha de Jesus Rangel
dc.contributor.referee3.fl_str_mv OLIVEIRA, Maria Betânia Melo de
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/8446164424520637
dc.contributor.author.fl_str_mv MARTINS, Maria Isabel Gomes
contributor_str_mv CARVALHO, Reginaldo de
SANTOS, Roseane Cavalcanti dos
MELO FILHO, Péricles de Albuquerque
CAMARA, Terezinha de Jesus Rangel
OLIVEIRA, Maria Betânia Melo de
dc.subject.por.fl_str_mv Arachis
Heteranthae
Citogenética molecular
Sequenciamento
topic Arachis
Heteranthae
Citogenética molecular
Sequenciamento
FITOTECNIA::MELHORAMENTO VEGETAL
dc.subject.cnpq.fl_str_mv FITOTECNIA::MELHORAMENTO VEGETAL
description The Arachis genus has been the target of several studies due to its importance in human and animal food and because its seeds are recognized as source of protein and oil of vegetal origin, besides its use as ornamental plants. Arachis breeding programs have as main objective the introduction of new varieties and increase of genetic variability through crosses and selection to obtain important agronomic characters. Cytogenetic techniques such as conventional staining, chromosome banding with fluorochromes and FISH were used to analyze four species of Heteranthae: Arachis pusilla, A. giacomettii, A. dardani and A. sylvestris. All species had a diploid chromosome number 2n = 20, A. pusilla and A. dardani presented a karyotypic formula 18m + 2sm and satellite type 2, while A. giacomettii and A. sylvestris had 16m + 4sm and satellite type 10. Flumachromes CMA and DAPI revealed in A. pusilla a large number of blocks rich in Guanine and Cytosine, located in eight chromosomal pairs in the pericentromeric position. DAPI + blocks were observed in the proximal region in most chromosomes of the analyzed accesses of this species after the FISH technique. Arachis dardani presented two large subterranean CMA + blocks. A. giacomettii and A. dardani presented only two CMA + blocks, in the terminal region of the satelite chromosome pair. In situ hybridization demonstrated in A. giacomettii two hybridization signals in the terminal region of a chromosomal pair and in A. pusilla four 45S rDNA sites in two chromosomal pairs and two adjacent 5S rDNA sites. In A. giacomettii, two hybridization signals were visualized in the terminal region of a chromosomal pair, coinciding with the CMA + blocks, but not visualized, but 5S rDNA sites. For the molecular technique, 35 oligonucleotide primers from legume expression libraries were used, which were applied in two contrasting peanut lines, "BR1" and "LVIPE-06" accessions, commonly used in the formation of segregating populations. Objective of obtaining a panel of endonucleases recommended to generate polymorphic markers useful for the genetic improvement of peanuts or for genetic mapping purposes. From the total of oligonucleotide primers, three generated polymorphisms directly from PCR between the accesses investigated. Of the monomorphic amplicons, ten were purified, sequenced and aligned for the identification of candidate SNPs for the generation of restriction and conversion maps in molecular tags.
publishDate 2010
dc.date.issued.fl_str_mv 2010-02-22
dc.date.accessioned.fl_str_mv 2017-02-20T18:08:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv MARTINS, Maria Isabel Gomes. Caracterização citogenética e molecular em acessos do gênero Arachis. 2010. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6475
identifier_str_mv MARTINS, Maria Isabel Gomes. Caracterização citogenética e molecular em acessos do gênero Arachis. 2010. 73 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
url http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6475
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dc.publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Melhoramento Genético de Plantas
dc.publisher.initials.fl_str_mv UFRPE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Departamento de Agronomia
publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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