Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers

Detalhes bibliográficos
Autor(a) principal: Sun, Dandan
Data de Publicação: 2020
Outros Autores: Ge, Yushuang, Cheng, Qiqun
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Journal of Oceanography
Texto Completo: https://www.revistas.usp.br/bjoce/article/view/168104
Resumo: Pampus argenteus (Perciformes: Stromateidae) is widely distributed along the coast of China, Indian Ocean, Arabian Gulf and North Sea. Due to overfishing and environmental degradation, its resources reduced year after year. Thus, new management strategies are urgently needed for the sustainable growth and utilization of this species. Characterization of the genetic variation of this fish species is essential for conserving the genetic resource and restraining the population decline. Therefore, it is necessary to have a clear understanding of the intraspecific genetic diversity and population structure of the species. In this study, we assess the genetic diversity and population structure of P. argenteus by using microsatellites. We genotyped 240 P. argenteus individuals from eight wild populations collected from Shidao (SD), Lianyungang (LYG), Lvsi (LS), Zhoushan (ZS), Dongtou (DT), Xiapu (XP), Haikou (HK), and Beibuwan (BBW) along the coast of China using fifteen polymorphic microsatellites. A total of 139 alleles were determined at 15 loci across the eight populations, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho) and expected heterozygosity (He) ranging from 0.100 to 1.000, and from 0.669 to 0.934 per locus-location combination, respectively. LS had the highest average allele (number of alleles, A=15.200), and HK the lowest (A=13.000). Hos of P. argenteus are less than Hes, indicating lack of heterozygote within populations. Analysis of molecular variance (AMOVA) showed that most variation (95.66%) occurred within populations, suggesting that this is the main source of total variance. This study will provide useful information for conservation and sustainable exploitation of this important fishery resource.
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spelling Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markersPampus argenteusmicrosatellitegenetic diversitypopulation structurePampus argenteus (Perciformes: Stromateidae) is widely distributed along the coast of China, Indian Ocean, Arabian Gulf and North Sea. Due to overfishing and environmental degradation, its resources reduced year after year. Thus, new management strategies are urgently needed for the sustainable growth and utilization of this species. Characterization of the genetic variation of this fish species is essential for conserving the genetic resource and restraining the population decline. Therefore, it is necessary to have a clear understanding of the intraspecific genetic diversity and population structure of the species. In this study, we assess the genetic diversity and population structure of P. argenteus by using microsatellites. We genotyped 240 P. argenteus individuals from eight wild populations collected from Shidao (SD), Lianyungang (LYG), Lvsi (LS), Zhoushan (ZS), Dongtou (DT), Xiapu (XP), Haikou (HK), and Beibuwan (BBW) along the coast of China using fifteen polymorphic microsatellites. A total of 139 alleles were determined at 15 loci across the eight populations, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho) and expected heterozygosity (He) ranging from 0.100 to 1.000, and from 0.669 to 0.934 per locus-location combination, respectively. LS had the highest average allele (number of alleles, A=15.200), and HK the lowest (A=13.000). Hos of P. argenteus are less than Hes, indicating lack of heterozygote within populations. Analysis of molecular variance (AMOVA) showed that most variation (95.66%) occurred within populations, suggesting that this is the main source of total variance. This study will provide useful information for conservation and sustainable exploitation of this important fishery resource.Universidade de São Paulo. Instituto Oceanográfico2020-03-26info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/bjoce/article/view/16810410.1590/s1679-87592019025106711Brazilian Journal of Oceanography; Vol. 67 (2019); e19251Brazilian Journal of Oceanography; v. 67 (2019); e19251Brazilian Journal of Oceanography; Vol. 67 (2019); e192511982-436X1679-8759reponame:Brazilian Journal of Oceanographyinstname:Universidade de São Paulo (USP)instacron:USPenghttps://www.revistas.usp.br/bjoce/article/view/168104/160043Copyright (c) 2020 Brazilian Journal of Oceanographyinfo:eu-repo/semantics/openAccessSun, DandanGe, YushuangCheng, Qiqun2020-12-04T18:11:28Zoai:revistas.usp.br:article/168104Revistahttps://www.revistas.usp.br/bjoce/indexPUBhttps://www.revistas.usp.br/bjoce/oaiio@usp.br||io@usp.br1982-436X1679-8759opendoar:2020-12-04T18:11:28Brazilian Journal of Oceanography - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
title Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
spellingShingle Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
Sun, Dandan
Pampus argenteus
microsatellite
genetic diversity
population structure
title_short Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
title_full Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
title_fullStr Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
title_full_unstemmed Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
title_sort Genetic diversity of eight wild populations of Pampus argenteus along the coast of China inferred from fifteen polymorphic microsatellite markers
author Sun, Dandan
author_facet Sun, Dandan
Ge, Yushuang
Cheng, Qiqun
author_role author
author2 Ge, Yushuang
Cheng, Qiqun
author2_role author
author
dc.contributor.author.fl_str_mv Sun, Dandan
Ge, Yushuang
Cheng, Qiqun
dc.subject.por.fl_str_mv Pampus argenteus
microsatellite
genetic diversity
population structure
topic Pampus argenteus
microsatellite
genetic diversity
population structure
description Pampus argenteus (Perciformes: Stromateidae) is widely distributed along the coast of China, Indian Ocean, Arabian Gulf and North Sea. Due to overfishing and environmental degradation, its resources reduced year after year. Thus, new management strategies are urgently needed for the sustainable growth and utilization of this species. Characterization of the genetic variation of this fish species is essential for conserving the genetic resource and restraining the population decline. Therefore, it is necessary to have a clear understanding of the intraspecific genetic diversity and population structure of the species. In this study, we assess the genetic diversity and population structure of P. argenteus by using microsatellites. We genotyped 240 P. argenteus individuals from eight wild populations collected from Shidao (SD), Lianyungang (LYG), Lvsi (LS), Zhoushan (ZS), Dongtou (DT), Xiapu (XP), Haikou (HK), and Beibuwan (BBW) along the coast of China using fifteen polymorphic microsatellites. A total of 139 alleles were determined at 15 loci across the eight populations, and a relatively high level of genetic diversity was observed, with observed heterozygosity (Ho) and expected heterozygosity (He) ranging from 0.100 to 1.000, and from 0.669 to 0.934 per locus-location combination, respectively. LS had the highest average allele (number of alleles, A=15.200), and HK the lowest (A=13.000). Hos of P. argenteus are less than Hes, indicating lack of heterozygote within populations. Analysis of molecular variance (AMOVA) showed that most variation (95.66%) occurred within populations, suggesting that this is the main source of total variance. This study will provide useful information for conservation and sustainable exploitation of this important fishery resource.
publishDate 2020
dc.date.none.fl_str_mv 2020-03-26
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/bjoce/article/view/168104
10.1590/s1679-87592019025106711
url https://www.revistas.usp.br/bjoce/article/view/168104
identifier_str_mv 10.1590/s1679-87592019025106711
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/bjoce/article/view/168104/160043
dc.rights.driver.fl_str_mv Copyright (c) 2020 Brazilian Journal of Oceanography
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2020 Brazilian Journal of Oceanography
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Instituto Oceanográfico
publisher.none.fl_str_mv Universidade de São Paulo. Instituto Oceanográfico
dc.source.none.fl_str_mv Brazilian Journal of Oceanography; Vol. 67 (2019); e19251
Brazilian Journal of Oceanography; v. 67 (2019); e19251
Brazilian Journal of Oceanography; Vol. 67 (2019); e19251
1982-436X
1679-8759
reponame:Brazilian Journal of Oceanography
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Brazilian Journal of Oceanography
collection Brazilian Journal of Oceanography
repository.name.fl_str_mv Brazilian Journal of Oceanography - Universidade de São Paulo (USP)
repository.mail.fl_str_mv io@usp.br||io@usp.br
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