Software for micromorphometric characterization of soil pores obtained from 2-D image analysis

Detalhes bibliográficos
Autor(a) principal: Cooper,Miguel
Data de Publicação: 2016
Outros Autores: Boschi,Raquel Stucchi, Silva,Vitor Boschi da, Silva,Laura Fernanda Simões da
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162016000400388
Resumo: ABSTRACT Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis.
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spelling Software for micromorphometric characterization of soil pores obtained from 2-D image analysissoil structuresoil thin sectionssoil porosity datapore morphologyABSTRACT Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis.Escola Superior de Agricultura "Luiz de Queiroz"2016-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162016000400388Scientia Agricola v.73 n.4 2016reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/0103-9016-2015-0053info:eu-repo/semantics/openAccessCooper,MiguelBoschi,Raquel StucchiSilva,Vitor Boschi daSilva,Laura Fernanda Simões daeng2016-06-30T00:00:00Zoai:scielo:S0103-90162016000400388Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2016-06-30T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
title Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
spellingShingle Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
Cooper,Miguel
soil structure
soil thin sections
soil porosity data
pore morphology
title_short Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
title_full Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
title_fullStr Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
title_full_unstemmed Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
title_sort Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
author Cooper,Miguel
author_facet Cooper,Miguel
Boschi,Raquel Stucchi
Silva,Vitor Boschi da
Silva,Laura Fernanda Simões da
author_role author
author2 Boschi,Raquel Stucchi
Silva,Vitor Boschi da
Silva,Laura Fernanda Simões da
author2_role author
author
author
dc.contributor.author.fl_str_mv Cooper,Miguel
Boschi,Raquel Stucchi
Silva,Vitor Boschi da
Silva,Laura Fernanda Simões da
dc.subject.por.fl_str_mv soil structure
soil thin sections
soil porosity data
pore morphology
topic soil structure
soil thin sections
soil porosity data
pore morphology
description ABSTRACT Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis.
publishDate 2016
dc.date.none.fl_str_mv 2016-08-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162016000400388
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162016000400388
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/0103-9016-2015-0053
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.73 n.4 2016
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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