Model-assisted phenotyping by digital images in papaya breeding program
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Scientia Agrícola (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294 |
Resumo: | ABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes. |
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oai:scielo:S0103-90162017000400294 |
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Scientia Agrícola (Online) |
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Model-assisted phenotyping by digital images in papaya breeding programCarica papayaphenomicsdigital image processingABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes.Escola Superior de Agricultura "Luiz de Queiroz"2017-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294Scientia Agricola v.74 n.4 2017reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/1678-992x-2016-0134info:eu-repo/semantics/openAccessCortes,Diego Fernando MarmolejoCatarina,Renato SantaBarros,Gislanne Brito de AraújoArêdes,Fernanda Abreu SantanaSilveira,Silvaldo Felipe daFerreguetti,Geraldo AntônioRamos,Helaine Christine CancelaViana,Alexandre PioPereira,Messias Gonzagaeng2017-05-11T00:00:00Zoai:scielo:S0103-90162017000400294Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2017-05-11T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Model-assisted phenotyping by digital images in papaya breeding program |
title |
Model-assisted phenotyping by digital images in papaya breeding program |
spellingShingle |
Model-assisted phenotyping by digital images in papaya breeding program Cortes,Diego Fernando Marmolejo Carica papaya phenomics digital image processing |
title_short |
Model-assisted phenotyping by digital images in papaya breeding program |
title_full |
Model-assisted phenotyping by digital images in papaya breeding program |
title_fullStr |
Model-assisted phenotyping by digital images in papaya breeding program |
title_full_unstemmed |
Model-assisted phenotyping by digital images in papaya breeding program |
title_sort |
Model-assisted phenotyping by digital images in papaya breeding program |
author |
Cortes,Diego Fernando Marmolejo |
author_facet |
Cortes,Diego Fernando Marmolejo Catarina,Renato Santa Barros,Gislanne Brito de Araújo Arêdes,Fernanda Abreu Santana Silveira,Silvaldo Felipe da Ferreguetti,Geraldo Antônio Ramos,Helaine Christine Cancela Viana,Alexandre Pio Pereira,Messias Gonzaga |
author_role |
author |
author2 |
Catarina,Renato Santa Barros,Gislanne Brito de Araújo Arêdes,Fernanda Abreu Santana Silveira,Silvaldo Felipe da Ferreguetti,Geraldo Antônio Ramos,Helaine Christine Cancela Viana,Alexandre Pio Pereira,Messias Gonzaga |
author2_role |
author author author author author author author author |
dc.contributor.author.fl_str_mv |
Cortes,Diego Fernando Marmolejo Catarina,Renato Santa Barros,Gislanne Brito de Araújo Arêdes,Fernanda Abreu Santana Silveira,Silvaldo Felipe da Ferreguetti,Geraldo Antônio Ramos,Helaine Christine Cancela Viana,Alexandre Pio Pereira,Messias Gonzaga |
dc.subject.por.fl_str_mv |
Carica papaya phenomics digital image processing |
topic |
Carica papaya phenomics digital image processing |
description |
ABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-08-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/1678-992x-2016-0134 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
dc.source.none.fl_str_mv |
Scientia Agricola v.74 n.4 2017 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1748936464325935104 |