Model-assisted phenotyping by digital images in papaya breeding program

Detalhes bibliográficos
Autor(a) principal: Cortes,Diego Fernando Marmolejo
Data de Publicação: 2017
Outros Autores: Catarina,Renato Santa, Barros,Gislanne Brito de Araújo, Arêdes,Fernanda Abreu Santana, Silveira,Silvaldo Felipe da, Ferreguetti,Geraldo Antônio, Ramos,Helaine Christine Cancela, Viana,Alexandre Pio, Pereira,Messias Gonzaga
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294
Resumo: ABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes.
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spelling Model-assisted phenotyping by digital images in papaya breeding programCarica papayaphenomicsdigital image processingABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes.Escola Superior de Agricultura "Luiz de Queiroz"2017-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294Scientia Agricola v.74 n.4 2017reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/1678-992x-2016-0134info:eu-repo/semantics/openAccessCortes,Diego Fernando MarmolejoCatarina,Renato SantaBarros,Gislanne Brito de AraújoArêdes,Fernanda Abreu SantanaSilveira,Silvaldo Felipe daFerreguetti,Geraldo AntônioRamos,Helaine Christine CancelaViana,Alexandre PioPereira,Messias Gonzagaeng2017-05-11T00:00:00Zoai:scielo:S0103-90162017000400294Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2017-05-11T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Model-assisted phenotyping by digital images in papaya breeding program
title Model-assisted phenotyping by digital images in papaya breeding program
spellingShingle Model-assisted phenotyping by digital images in papaya breeding program
Cortes,Diego Fernando Marmolejo
Carica papaya
phenomics
digital image processing
title_short Model-assisted phenotyping by digital images in papaya breeding program
title_full Model-assisted phenotyping by digital images in papaya breeding program
title_fullStr Model-assisted phenotyping by digital images in papaya breeding program
title_full_unstemmed Model-assisted phenotyping by digital images in papaya breeding program
title_sort Model-assisted phenotyping by digital images in papaya breeding program
author Cortes,Diego Fernando Marmolejo
author_facet Cortes,Diego Fernando Marmolejo
Catarina,Renato Santa
Barros,Gislanne Brito de Araújo
Arêdes,Fernanda Abreu Santana
Silveira,Silvaldo Felipe da
Ferreguetti,Geraldo Antônio
Ramos,Helaine Christine Cancela
Viana,Alexandre Pio
Pereira,Messias Gonzaga
author_role author
author2 Catarina,Renato Santa
Barros,Gislanne Brito de Araújo
Arêdes,Fernanda Abreu Santana
Silveira,Silvaldo Felipe da
Ferreguetti,Geraldo Antônio
Ramos,Helaine Christine Cancela
Viana,Alexandre Pio
Pereira,Messias Gonzaga
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Cortes,Diego Fernando Marmolejo
Catarina,Renato Santa
Barros,Gislanne Brito de Araújo
Arêdes,Fernanda Abreu Santana
Silveira,Silvaldo Felipe da
Ferreguetti,Geraldo Antônio
Ramos,Helaine Christine Cancela
Viana,Alexandre Pio
Pereira,Messias Gonzaga
dc.subject.por.fl_str_mv Carica papaya
phenomics
digital image processing
topic Carica papaya
phenomics
digital image processing
description ABSTRACT Manual phenotyping for papaya Carica papaya (L) breeding purposes limits the evaluation of a great number of plants and hampers selection of superior genotypes. This study aimed to validate two methodologies for the phenotyping of morpho-agronomic plant traits using image analysis and fruit traits through image processing. In plants of the ‘THB’ variety and ‘UENF/Caliman-01’ hybrid two images (A and B) were analyzed to estimate commercial and irregularly shaped fruits. Image A was also used in the estimation of plant height, stem diameter and the first fruit insertion height. In ‘THB’ fruits, largest and smallest diameters, length, and volume were estimated by using a caliper and image processing (IP). Volume was obtained by water column displacement (WCD) and by the expression of ellipsoid approximation (EA). Correlations above 0.85 between manual and image measurements were obtained for all traits. The averages of the morpho-agronomic traits, estimated by using images, were similar when compared to the averages measured manually. In addition, the errors of the proposed methodologies were low compared to manual phenotyping. Bland-Altman's approach indicated agreement between the volume estimated by WCD and EA using caliper and IP. The strong association obtained between volume and fruit weight suggests the use of regression to estimate this trait. Thus, the expectation is that image-based phenotyping can be used to expand the experiments, thereby maintaining accuracy and providing greater genetic gains in the selection of superior genotypes.
publishDate 2017
dc.date.none.fl_str_mv 2017-08-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162017000400294
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1678-992x-2016-0134
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.74 n.4 2017
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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