Lipid and transcriptome profile of the brain of pigs fed with different oil sources

Detalhes bibliográficos
Autor(a) principal: Silva, Bruna Pereira Martins da
Data de Publicação: 2022
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://www.teses.usp.br/teses/disponiveis/74/74135/tde-31012023-094032/
Resumo: Pigs (Sus scrofa) are production animals of great importance for the economy due to the production of quality animal protein and for animal and human science as biomedical model animals. The brain of pigs has great similarity to that of humans and may have its fatty acid (FA) content and profile modulated by diet. Lipids act as signals that regulate several important biological processes and may influence gene expression. Thus, the study of the effects of different lipid sources on the brain transcriptome profile, is of great importance for new insights associated with animal and human health. The general aim of this study was to evaluate the effect of different sources and levels of oil on the lipid and transcriptional profile of brain tissue. The experimental diets consisted of corn and soybean meal diets containing 1.5% soybean oil (SOY1.5), or 3% soybean oil (SOY3.0), or 3% canola oil (CO), or 3% fish oil (FO). The experimental period was 98 days, the diets were offered in the growth and finishing phases of immunocastrated males, and 18 animals per treatment/diet were used. After slaughter, brain samples were collected for determination of total lipid content and for FA profiling. Total mRNA extraction was performed for the sequencing of the pig brain transcriptome. For statistical analysis of differential expression, the DESeq2 package was used, in which DEG were identified (FDR < 0.05) among brain samples. After the DEG identification, functional enrichment analysis was performed by using MetaCore software, from which metabolic pathways and networks were identified (p-value < 0.05). For the analysis of different levels of soybean oil (SOY1.5 or SOY3.0), no changes in total lipid content and FA profile were observed. The metabolic pathways and networks were associated with lipid metabolism, immune response, and calcium transport. For the analysis of the different oil sources there were no changes in total lipid content and some FA showed statistical differences. The main pathways and networks identified were associated with cell signaling, lipid metabolism, synaptic transmission, and inflammatory processes. The results found herein could guide us for a better understanding of the effects and mechanisms of dietary FA on the transcriptome and the FA profile of the brain tissue. Furthermore, these results contribute to advances in the nutrigenomics field and to improvements in animal and human health. The results allowed the writing of two manuscripts, already submitted to international scientific journals, available in chapters 1 and 2 of this dissertation.
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spelling Lipid and transcriptome profile of the brain of pigs fed with different oil sourcesPerfil lipídico e do transcriptoma do cérebro de suínos alimentados com diferentes fontes de óleoÁcidos graxosBrain functionCell signalingExpressão gênicaFatty acidsFunção cerebralGene expressionHomeostase lipídicaLipid homeostasisMetabolic pathwaysNeuroproteçãoNeuroprotectionPigsRNA-seqRNA-seqSinalização celularSuínosVias metabólicasPigs (Sus scrofa) are production animals of great importance for the economy due to the production of quality animal protein and for animal and human science as biomedical model animals. The brain of pigs has great similarity to that of humans and may have its fatty acid (FA) content and profile modulated by diet. Lipids act as signals that regulate several important biological processes and may influence gene expression. Thus, the study of the effects of different lipid sources on the brain transcriptome profile, is of great importance for new insights associated with animal and human health. The general aim of this study was to evaluate the effect of different sources and levels of oil on the lipid and transcriptional profile of brain tissue. The experimental diets consisted of corn and soybean meal diets containing 1.5% soybean oil (SOY1.5), or 3% soybean oil (SOY3.0), or 3% canola oil (CO), or 3% fish oil (FO). The experimental period was 98 days, the diets were offered in the growth and finishing phases of immunocastrated males, and 18 animals per treatment/diet were used. After slaughter, brain samples were collected for determination of total lipid content and for FA profiling. Total mRNA extraction was performed for the sequencing of the pig brain transcriptome. For statistical analysis of differential expression, the DESeq2 package was used, in which DEG were identified (FDR < 0.05) among brain samples. After the DEG identification, functional enrichment analysis was performed by using MetaCore software, from which metabolic pathways and networks were identified (p-value < 0.05). For the analysis of different levels of soybean oil (SOY1.5 or SOY3.0), no changes in total lipid content and FA profile were observed. The metabolic pathways and networks were associated with lipid metabolism, immune response, and calcium transport. For the analysis of the different oil sources there were no changes in total lipid content and some FA showed statistical differences. The main pathways and networks identified were associated with cell signaling, lipid metabolism, synaptic transmission, and inflammatory processes. The results found herein could guide us for a better understanding of the effects and mechanisms of dietary FA on the transcriptome and the FA profile of the brain tissue. Furthermore, these results contribute to advances in the nutrigenomics field and to improvements in animal and human health. The results allowed the writing of two manuscripts, already submitted to international scientific journals, available in chapters 1 and 2 of this dissertation.Os suínos (Sus scrofa) são animais de produção de grande importância para a economia devido à produção de proteína animal de qualidade e para a ciência animal e humana, como animais modelo biomédicos. O cérebro de suínos possui grande similaridade com o dos humanos e pode ter seu conteúdo e perfil de ácidos graxos (AG) modulados pela dieta. Os lipídios atuam como sinalizadores que regulam diversos processos biológicos importantes e podem influenciar na expressão gênica. Assim, o estudo dos efeitos de diferentes fontes de lipídios sobre o perfil do transcriptoma do cérebro, é de grande importância para novos insights associados à saúde animal e humana. O objetivo geral desse estudo foi avaliar o efeito de diferentes fontes e níveis de óleo sobre o perfil lipídico e transcricional do tecido cerebral. As dietas experimentais consistiam em dietas de milho e farelo de soja contendo 1,5% de óleo de soja (SOY1.5), ou 3% de óleo de soja (SOY3.0), ou 3% de óleo de canola (CO), ou 3% de óleo de peixe (FO). O período experimental foi de 98 dias, as dietas foram oferecidas nas fases de crescimento e terminação de machos imunocastrados e foram utilizados 18 animais por tratamento/dieta. Após o abate, as amostras de cérebro foram coletadas para a determinação do conteúdo total de lipídios e para o perfil de AG. A extração de RNAm total foi realizada para o sequenciamento do transcriptoma do cérebro dos suínos. Para a análise estatística da expressão diferencial foi utilizado o pacote DESeq2, em que foram identificados os GDE (FDR < 0,05) entre as amostras de cérebro. Após a identificação dos GDE, foi realizada a análise de enriquecimento funcional pelo software MetaCore, a partir do qual foram identificadas vias e redes metabólicas (p-valor < 0,05). Para a análise dos diferentes níveis de óleo de soja (SOY1.5 ou SOY3.0), não foram observadas mudanças no conteúdo total de lipídios e no perfil de AG. As vias e redes metabólicas foram associadas ao metabolismo lipídico, a resposta imune e ao transporte de cálcio. Para a análise das diferentes fontes de óleo não houve mudanças no conteúdo total de lipídios e alguns AG apresentaram diferenças estatísticas. As principais vias e redes identificadas foram associadas a sinalização celular, ao metabolismo lipídico, a transmissão sináptica e a processos inflamatórios. Os resultados aqui encontrados podem nos orientar para uma melhor compreensão dos efeitos e mecanismos dos AG dietéticos no transcriptoma e no perfil de AG do tecido cerebral. Além disso, esses resultados contribuem para os avanços na área da nutrigenômica e para melhorias na saúde animal e humana. Os resultados propiciaram a escrita de dois manuscritos, já submetidos em revistas científicas internacionais, disponibilizados nos capítulos 1 e 2 desta dissertação.Biblioteca Digitais de Teses e Dissertações da USPCesar, Aline Silva MelloSilva, Bruna Pereira Martins da2022-06-23info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/74/74135/tde-31012023-094032/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2023-01-31T12:50:17Zoai:teses.usp.br:tde-31012023-094032Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212023-01-31T12:50:17Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Lipid and transcriptome profile of the brain of pigs fed with different oil sources
Perfil lipídico e do transcriptoma do cérebro de suínos alimentados com diferentes fontes de óleo
title Lipid and transcriptome profile of the brain of pigs fed with different oil sources
spellingShingle Lipid and transcriptome profile of the brain of pigs fed with different oil sources
Silva, Bruna Pereira Martins da
Ácidos graxos
Brain function
Cell signaling
Expressão gênica
Fatty acids
Função cerebral
Gene expression
Homeostase lipídica
Lipid homeostasis
Metabolic pathways
Neuroproteção
Neuroprotection
Pigs
RNA-seq
RNA-seq
Sinalização celular
Suínos
Vias metabólicas
title_short Lipid and transcriptome profile of the brain of pigs fed with different oil sources
title_full Lipid and transcriptome profile of the brain of pigs fed with different oil sources
title_fullStr Lipid and transcriptome profile of the brain of pigs fed with different oil sources
title_full_unstemmed Lipid and transcriptome profile of the brain of pigs fed with different oil sources
title_sort Lipid and transcriptome profile of the brain of pigs fed with different oil sources
author Silva, Bruna Pereira Martins da
author_facet Silva, Bruna Pereira Martins da
author_role author
dc.contributor.none.fl_str_mv Cesar, Aline Silva Mello
dc.contributor.author.fl_str_mv Silva, Bruna Pereira Martins da
dc.subject.por.fl_str_mv Ácidos graxos
Brain function
Cell signaling
Expressão gênica
Fatty acids
Função cerebral
Gene expression
Homeostase lipídica
Lipid homeostasis
Metabolic pathways
Neuroproteção
Neuroprotection
Pigs
RNA-seq
RNA-seq
Sinalização celular
Suínos
Vias metabólicas
topic Ácidos graxos
Brain function
Cell signaling
Expressão gênica
Fatty acids
Função cerebral
Gene expression
Homeostase lipídica
Lipid homeostasis
Metabolic pathways
Neuroproteção
Neuroprotection
Pigs
RNA-seq
RNA-seq
Sinalização celular
Suínos
Vias metabólicas
description Pigs (Sus scrofa) are production animals of great importance for the economy due to the production of quality animal protein and for animal and human science as biomedical model animals. The brain of pigs has great similarity to that of humans and may have its fatty acid (FA) content and profile modulated by diet. Lipids act as signals that regulate several important biological processes and may influence gene expression. Thus, the study of the effects of different lipid sources on the brain transcriptome profile, is of great importance for new insights associated with animal and human health. The general aim of this study was to evaluate the effect of different sources and levels of oil on the lipid and transcriptional profile of brain tissue. The experimental diets consisted of corn and soybean meal diets containing 1.5% soybean oil (SOY1.5), or 3% soybean oil (SOY3.0), or 3% canola oil (CO), or 3% fish oil (FO). The experimental period was 98 days, the diets were offered in the growth and finishing phases of immunocastrated males, and 18 animals per treatment/diet were used. After slaughter, brain samples were collected for determination of total lipid content and for FA profiling. Total mRNA extraction was performed for the sequencing of the pig brain transcriptome. For statistical analysis of differential expression, the DESeq2 package was used, in which DEG were identified (FDR < 0.05) among brain samples. After the DEG identification, functional enrichment analysis was performed by using MetaCore software, from which metabolic pathways and networks were identified (p-value < 0.05). For the analysis of different levels of soybean oil (SOY1.5 or SOY3.0), no changes in total lipid content and FA profile were observed. The metabolic pathways and networks were associated with lipid metabolism, immune response, and calcium transport. For the analysis of the different oil sources there were no changes in total lipid content and some FA showed statistical differences. The main pathways and networks identified were associated with cell signaling, lipid metabolism, synaptic transmission, and inflammatory processes. The results found herein could guide us for a better understanding of the effects and mechanisms of dietary FA on the transcriptome and the FA profile of the brain tissue. Furthermore, these results contribute to advances in the nutrigenomics field and to improvements in animal and human health. The results allowed the writing of two manuscripts, already submitted to international scientific journals, available in chapters 1 and 2 of this dissertation.
publishDate 2022
dc.date.none.fl_str_mv 2022-06-23
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/74/74135/tde-31012023-094032/
url https://www.teses.usp.br/teses/disponiveis/74/74135/tde-31012023-094032/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.coverage.none.fl_str_mv
dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
dc.source.none.fl_str_mv
reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
collection Biblioteca Digital de Teses e Dissertações da USP
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
repository.mail.fl_str_mv virginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.br
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