Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984

Detalhes bibliográficos
Autor(a) principal: Dias, Everton Santos
Data de Publicação: 2020
Tipo de documento: Tese
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://www.teses.usp.br/teses/disponiveis/59/59131/tde-17062021-185152/
Resumo: Our study is divided into two chapters. The first is a phylogenetic proposition based on molecular data for the Leptoceridae family estimating the divergence time between clades and proposing a hypothesis of historical biogeography for family. In order to achieve these objectives, we use the database of the first phylogenetic proposition of the family based on molecular data, which is available on GenBank. This referred proposition used 33 genera and did not estimate the time of divergence. In this context, we added to the matrix the data of five more genera (Amazonatolica, Amphoropsyche, Leptecho, Neoathripsodes and Russobex), using 38 of the 46 genera of Leptoceridae. The sequences were aligned using the MAFFT platform with the E-INS-i protocol. Models of nucleotide substitution were selected using the Akaike Information Criterion (AIC) in jModelTest 2 through the CIPRES platform. The Bayesian inference was implemented in MrBayes through the CIPRES platform. The diversification times was inferred using a relaxed clock through the BEAST 2 platform using fossils and data from the literature as calibration points. A biogeographic analysis was implemented on the R package BioGeoBears. Our results suggested the origin of Leptoceridae about 130 million years ago (MYA) in the supercontinent Gondwana with a first cladogenesis separating two big clades: (Leptorussinae + Triplectidinae), and (Grumichelinae + Leptocerinae). The divergence between these two big lineages is congruent with the division of Gondwana around 135 (MYA) into two blocks: Western Gondwana and Eastern Gondwana. The Leptorussinae + Triplectidinae clade has a possible ancestral range of distribution in Eastern Gondwana, while the Grumichellinae + Leptocerinae clade with a possible ancestral range distribution in Western Gondwana. The second chapter consists of the reanalysis of specimens of the monotypic genus Achoropsyche deposited in some collections. This genus occurs in the Neotropical region (from Venezuela to Argentina) and has an unusually widespread distribution for an only one species. With the reanalysis of these specimens, we are proposing five new species, four for Brazil and one for Ecuador. In addition, we propose a phylogeny based on morphological data to understand the evolution of the characters and the relationship between species. The data matrix was performed at Mesquite and the phylogenetic analyzes were performed using the Parsimony criterion implemented in the TNT software. Additionally, we perform a scanning electron microscopy (SEM) to analyze ultra-structures of the head, thorax and abdomen. The phylogenetic approach associated with the SEM photos has enabled us to redefine the diagnosis of the genus. In addition, we are proposing an identification key for males of the genus and a map of species distribution.
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spelling Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984Sistemática e biogeografia de Leptoceridae (Trichoptera) com revisão de Achoropsyche Holzenthal, 1984BayAreaBayareaBayesian inferenceBioGeoBearsDivergence timeInferência BayesianaLong-horned caddisfliesMorfologiaNeotropical regionParcimôniaParsimonyRegião neotropicalScanning electron microscopyTempo de divergênciaOur study is divided into two chapters. The first is a phylogenetic proposition based on molecular data for the Leptoceridae family estimating the divergence time between clades and proposing a hypothesis of historical biogeography for family. In order to achieve these objectives, we use the database of the first phylogenetic proposition of the family based on molecular data, which is available on GenBank. This referred proposition used 33 genera and did not estimate the time of divergence. In this context, we added to the matrix the data of five more genera (Amazonatolica, Amphoropsyche, Leptecho, Neoathripsodes and Russobex), using 38 of the 46 genera of Leptoceridae. The sequences were aligned using the MAFFT platform with the E-INS-i protocol. Models of nucleotide substitution were selected using the Akaike Information Criterion (AIC) in jModelTest 2 through the CIPRES platform. The Bayesian inference was implemented in MrBayes through the CIPRES platform. The diversification times was inferred using a relaxed clock through the BEAST 2 platform using fossils and data from the literature as calibration points. A biogeographic analysis was implemented on the R package BioGeoBears. Our results suggested the origin of Leptoceridae about 130 million years ago (MYA) in the supercontinent Gondwana with a first cladogenesis separating two big clades: (Leptorussinae + Triplectidinae), and (Grumichelinae + Leptocerinae). The divergence between these two big lineages is congruent with the division of Gondwana around 135 (MYA) into two blocks: Western Gondwana and Eastern Gondwana. The Leptorussinae + Triplectidinae clade has a possible ancestral range of distribution in Eastern Gondwana, while the Grumichellinae + Leptocerinae clade with a possible ancestral range distribution in Western Gondwana. The second chapter consists of the reanalysis of specimens of the monotypic genus Achoropsyche deposited in some collections. This genus occurs in the Neotropical region (from Venezuela to Argentina) and has an unusually widespread distribution for an only one species. With the reanalysis of these specimens, we are proposing five new species, four for Brazil and one for Ecuador. In addition, we propose a phylogeny based on morphological data to understand the evolution of the characters and the relationship between species. The data matrix was performed at Mesquite and the phylogenetic analyzes were performed using the Parsimony criterion implemented in the TNT software. Additionally, we perform a scanning electron microscopy (SEM) to analyze ultra-structures of the head, thorax and abdomen. The phylogenetic approach associated with the SEM photos has enabled us to redefine the diagnosis of the genus. In addition, we are proposing an identification key for males of the genus and a map of species distribution.O nosso estudo está divido em dois capítulos. O primeiro deles consiste numa proposição filogenética baseado em dados moleculares para família Leptoceridae estimando o tempo de divergência entre os clados e propondo uma hipótese de biogeografia histórica para família. Para realização desses objetivos nos utilizamos a base de dados da primeira proposta filogenética da família baseado em dados moleculares disponível no GenBank. Como a referida proposta utilizou somente 33 gêneros e não estimou o tempo de divergência. Nesse contexto, adicionamos na matriz de dados mais cinco gêneros (Amazonatolica, Amphoropsyche, Leptecho, Neoathripsodes e Russobex), totalizando 38 dos 46 gêneros de Leptoceridae. As sequencias foram alinhadas através da plataforma MAFFT com o protocolo E-INS-i. O modelo de substituição de nucleotídeo para cada gene foi selecionado utilizando o Akaike Information Criterion (AIC) implementado no jModelTest 2 através da plataforma CIPRES. A inferência Bayesiana foi implementada no MrBayes através da plataforma CIPRES. Para inferir tempos de diversificação foram inferidos usando um relógio morfológico relaxado através dos plataforma BEAST 2 utilizando fósseis e dados da literatura como ponto de calibração. A análise biogeográfica foi implementada com a plataforma R BioGeoBears. Nossos resultados sugerem que a origem de Leptoceridae ocorreu cerca de 130 milhões de anos atrás (MYA) no supercontinente Gondwana com a primeira cladogênese resultando em dois clados: ((Leptorussinae + Triplectidinae) + (Grumichelinae + Leptocerinae)). A divergência entre essas duas grandes linhagens é congruente com a divisão de Gondwana em dois blocos em torno de 135 (MYA) em: West Gondwana e East Gondwana. O clado Leptorussinae + Triplectidinae tem o possível intervalo ancestral de distribuição no East Gondwana, enquanto o clado Grumichellinae + Leptocerinae tem o possível intervalo ancestral de distribuição no West Gondwana. O segundo capítulo consiste na reanalise dos espécimes do gênero monotípico Achoropsyche depositados em algumas coleções. Este gênero ocorre na região Neotropical (Venezuela à Argentina) e possuí uma incomum ampla distribuição para uma única espécie. Com a reanalise desses espécimes, estamos propondo cinco espécies novas, quatro para o Brasil e uma para o Equador. Além disso, propomos uma filogenia baseados em dados morfológicos para entender a evolução dos caracteres e a relação de parentesco entre as espécies. A matriz de dados foi feita no Mesquite e as análises filogenéticas foi realizada através do critério de Parcimônia implementada no software TNT. Além disso, realizamos uma microscopia eletrônica de varredura (MEV) para analisar ultra estruturas da cabeça, tórax e abdômen. Essa abordagem filogenética associado com as fotos do MEV nos proporcionou redefinir a diagnose do gênero. Além disso, estamos propondo uma chave de identificação para os machos do gênero e um mapa de distribuição das espécies.Biblioteca Digitais de Teses e Dissertações da USPBispo, Pitágoras da ConceiçãoCalor, Adolfo RicardoDias, Everton Santos2020-12-21info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttps://www.teses.usp.br/teses/disponiveis/59/59131/tde-17062021-185152/reponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USPLiberar o conteúdo para acesso público.info:eu-repo/semantics/openAccesseng2021-06-21T20:30:02Zoai:teses.usp.br:tde-17062021-185152Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212021-06-21T20:30:02Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
Sistemática e biogeografia de Leptoceridae (Trichoptera) com revisão de Achoropsyche Holzenthal, 1984
title Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
spellingShingle Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
Dias, Everton Santos
BayArea
Bayarea
Bayesian inference
BioGeoBears
Divergence time
Inferência Bayesiana
Long-horned caddisflies
Morfologia
Neotropical region
Parcimônia
Parsimony
Região neotropical
Scanning electron microscopy
Tempo de divergência
title_short Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
title_full Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
title_fullStr Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
title_full_unstemmed Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
title_sort Systematic and biogeography of Leptoceridae (Trichoptera) with review of Achoropsyche Holzenthal, 1984
author Dias, Everton Santos
author_facet Dias, Everton Santos
author_role author
dc.contributor.none.fl_str_mv Bispo, Pitágoras da Conceição
Calor, Adolfo Ricardo
dc.contributor.author.fl_str_mv Dias, Everton Santos
dc.subject.por.fl_str_mv BayArea
Bayarea
Bayesian inference
BioGeoBears
Divergence time
Inferência Bayesiana
Long-horned caddisflies
Morfologia
Neotropical region
Parcimônia
Parsimony
Região neotropical
Scanning electron microscopy
Tempo de divergência
topic BayArea
Bayarea
Bayesian inference
BioGeoBears
Divergence time
Inferência Bayesiana
Long-horned caddisflies
Morfologia
Neotropical region
Parcimônia
Parsimony
Região neotropical
Scanning electron microscopy
Tempo de divergência
description Our study is divided into two chapters. The first is a phylogenetic proposition based on molecular data for the Leptoceridae family estimating the divergence time between clades and proposing a hypothesis of historical biogeography for family. In order to achieve these objectives, we use the database of the first phylogenetic proposition of the family based on molecular data, which is available on GenBank. This referred proposition used 33 genera and did not estimate the time of divergence. In this context, we added to the matrix the data of five more genera (Amazonatolica, Amphoropsyche, Leptecho, Neoathripsodes and Russobex), using 38 of the 46 genera of Leptoceridae. The sequences were aligned using the MAFFT platform with the E-INS-i protocol. Models of nucleotide substitution were selected using the Akaike Information Criterion (AIC) in jModelTest 2 through the CIPRES platform. The Bayesian inference was implemented in MrBayes through the CIPRES platform. The diversification times was inferred using a relaxed clock through the BEAST 2 platform using fossils and data from the literature as calibration points. A biogeographic analysis was implemented on the R package BioGeoBears. Our results suggested the origin of Leptoceridae about 130 million years ago (MYA) in the supercontinent Gondwana with a first cladogenesis separating two big clades: (Leptorussinae + Triplectidinae), and (Grumichelinae + Leptocerinae). The divergence between these two big lineages is congruent with the division of Gondwana around 135 (MYA) into two blocks: Western Gondwana and Eastern Gondwana. The Leptorussinae + Triplectidinae clade has a possible ancestral range of distribution in Eastern Gondwana, while the Grumichellinae + Leptocerinae clade with a possible ancestral range distribution in Western Gondwana. The second chapter consists of the reanalysis of specimens of the monotypic genus Achoropsyche deposited in some collections. This genus occurs in the Neotropical region (from Venezuela to Argentina) and has an unusually widespread distribution for an only one species. With the reanalysis of these specimens, we are proposing five new species, four for Brazil and one for Ecuador. In addition, we propose a phylogeny based on morphological data to understand the evolution of the characters and the relationship between species. The data matrix was performed at Mesquite and the phylogenetic analyzes were performed using the Parsimony criterion implemented in the TNT software. Additionally, we perform a scanning electron microscopy (SEM) to analyze ultra-structures of the head, thorax and abdomen. The phylogenetic approach associated with the SEM photos has enabled us to redefine the diagnosis of the genus. In addition, we are proposing an identification key for males of the genus and a map of species distribution.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-21
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.teses.usp.br/teses/disponiveis/59/59131/tde-17062021-185152/
url https://www.teses.usp.br/teses/disponiveis/59/59131/tde-17062021-185152/
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv
dc.rights.driver.fl_str_mv Liberar o conteúdo para acesso público.
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Liberar o conteúdo para acesso público.
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
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dc.publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
publisher.none.fl_str_mv Biblioteca Digitais de Teses e Dissertações da USP
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reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
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instname_str Universidade de São Paulo (USP)
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institution USP
reponame_str Biblioteca Digital de Teses e Dissertações da USP
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
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