Generalized Ising measures for one-dimensional lattice gases and their applications

Detalhes bibliográficos
Autor(a) principal: Ngo Phuoc Nguyen Ngoc
Data de Publicação: 2022
Tipo de documento: Tese
Idioma: eng
Título da fonte: Biblioteca Digital de Teses e Dissertações da USP
Texto Completo: https://doi.org/10.11606/T.45.2022.tde-24052023-114357
Resumo: The processes studied are Interacting Particle Systems in which particles move on sites of a lattice with periodic boundary conditions. The particle interaction rule is the exclusion rule. Among the two classes of processes studied here, the first class is a generalization of the Exclusion Process. The generalization amounts to an extension of the dependence upon neighboring particles of a particle transition rate. In the other class of the processes studied, we substituted particles with rods that occupy several contiguous sites, defined that each rod may be in one of two possible states, and defined the rules for state switch. The transition rules for rod motion are similar to the rules for particles in our generalizations of the Exclusion Process. For each process constructed, we studied the conditions that ensure that its time-invariant distribution is an Ising type measure. The results relate the rates of motion and their ranges to the range and the interactions expressed in the potential function of Ising measure. We also studied the behavior of the process when they evolve in their respective invariant states. The study revealed novel phenomena in the behavior of particle flux as a function of particle density. One of the phenomena is non-monotonicity which has not been observed in the Classical Exclusion Process. For the interacting rod system, we revealed and explained the effect of cooperative pushing that had been observed previously in the RNA transcription process executed by RNA polymerase enzymes. Our results apply to understanding this biological process and to the traffic of cars that are traditionally modeled by the Exclusion Process.
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spelling info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis Generalized Ising measures for one-dimensional lattice gases and their applications Medidas de Gibbs generalizadas para os gases em redes unidimensionais e suas aplicações 2022-05-09Vladimir BelitskyGunter Markus SchutzAnatoli IambartsevJosé Ricardo Gonçalves de MendonçaManuel Alejandro Gonzalez NavarretePaulo Afonso Faria da VeigaNgo Phuoc Nguyen NgocUniversidade de São PauloEstatísticaUSPBR Alongamento de transcrição de RNA Canonical ensemble Conjunto canônico Conjunto grand canônico Cooperatividade Cooperativity Exclusion process Gibbs measure Grand-canonical ensemble Ising measure Kramers-Wannier matrices Markov models Matrizes de Kramers-Wannier Medida de Gibbs Medida de Ising Modelos de Markov Processo de exclusão RNA polimerase RNA polymerase Transcription elongation The processes studied are Interacting Particle Systems in which particles move on sites of a lattice with periodic boundary conditions. The particle interaction rule is the exclusion rule. Among the two classes of processes studied here, the first class is a generalization of the Exclusion Process. The generalization amounts to an extension of the dependence upon neighboring particles of a particle transition rate. In the other class of the processes studied, we substituted particles with rods that occupy several contiguous sites, defined that each rod may be in one of two possible states, and defined the rules for state switch. The transition rules for rod motion are similar to the rules for particles in our generalizations of the Exclusion Process. For each process constructed, we studied the conditions that ensure that its time-invariant distribution is an Ising type measure. The results relate the rates of motion and their ranges to the range and the interactions expressed in the potential function of Ising measure. We also studied the behavior of the process when they evolve in their respective invariant states. The study revealed novel phenomena in the behavior of particle flux as a function of particle density. One of the phenomena is non-monotonicity which has not been observed in the Classical Exclusion Process. For the interacting rod system, we revealed and explained the effect of cooperative pushing that had been observed previously in the RNA transcription process executed by RNA polymerase enzymes. Our results apply to understanding this biological process and to the traffic of cars that are traditionally modeled by the Exclusion Process. Os processes estudados na tese são sistemas de partículas que se movimentam pelos sítios de uma rede unidimensional com a condição periódica de fronteira. As partículas interagem pela lei de exclusão. Os processos estudados, nos quais cada partícula pode ocupar um só sítio da rede, são generalizações do Processo de Exclusão; a essência da generalização é a extensão do alcance de dependência de parâmetros de movimentos de partícula da posição e da presença de outras partículas. No outro tipo dos processos estudados substituímos partículas por bastões que ocupam mais que um sítio e defi nimos que cada bastão pode estar num de dois possíveis estados. As regras de interação entre os bostões são parecidas com as regras aplicadas na generalização do processo de Exclusão. Para cada processo construído estudamos as condições necessárias e sufi cientes para que a distribuição invariante de processo esteja do tipo da medida de Ising. Os resultados mostram as relações entre os parâmetros de interação entre partículas (ou bastões) e a forma da função-potencial nas correspondentes medidas de Ising. Na tese, analisamos também o comportamento dos processos construídos quando eles evoluem de acordo com suas distribuições invariantes. Os resultados de análise revelam diversos fenómenos novos que ocorrem no fluxo de partículas e de bostões. Observamos e explicamos o comportamento não monótono de fluxo em relação da densidade de partículas que estaria ausente caso as partículas se movimentassem no Processo clássico de Exclusão. Também, observamos e explicamos o efeito de cooperação de bastões que aumenta a velocidade de cada bastão (\"empurrão coletivo\"). Os resultados aplicam-se aos estudos do processo de transcrição de RNA produzido por RNA polimerase a partir da informação contida em DNA, e também aos estudos de trânsito de veículos. https://doi.org/10.11606/T.45.2022.tde-24052023-114357info:eu-repo/semantics/openAccessengreponame:Biblioteca Digital de Teses e Dissertações da USPinstname:Universidade de São Paulo (USP)instacron:USP2023-12-21T20:03:19Zoai:teses.usp.br:tde-24052023-114357Biblioteca Digital de Teses e Dissertaçõeshttp://www.teses.usp.br/PUBhttp://www.teses.usp.br/cgi-bin/mtd2br.plvirginia@if.usp.br|| atendimento@aguia.usp.br||virginia@if.usp.bropendoar:27212023-12-22T13:14:29.664192Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)false
dc.title.en.fl_str_mv Generalized Ising measures for one-dimensional lattice gases and their applications
dc.title.alternative.pt.fl_str_mv Medidas de Gibbs generalizadas para os gases em redes unidimensionais e suas aplicações
title Generalized Ising measures for one-dimensional lattice gases and their applications
spellingShingle Generalized Ising measures for one-dimensional lattice gases and their applications
Ngo Phuoc Nguyen Ngoc
title_short Generalized Ising measures for one-dimensional lattice gases and their applications
title_full Generalized Ising measures for one-dimensional lattice gases and their applications
title_fullStr Generalized Ising measures for one-dimensional lattice gases and their applications
title_full_unstemmed Generalized Ising measures for one-dimensional lattice gases and their applications
title_sort Generalized Ising measures for one-dimensional lattice gases and their applications
author Ngo Phuoc Nguyen Ngoc
author_facet Ngo Phuoc Nguyen Ngoc
author_role author
dc.contributor.advisor1.fl_str_mv Vladimir Belitsky
dc.contributor.advisor-co1.fl_str_mv Gunter Markus Schutz
dc.contributor.referee1.fl_str_mv Anatoli Iambartsev
dc.contributor.referee2.fl_str_mv José Ricardo Gonçalves de Mendonça
dc.contributor.referee3.fl_str_mv Manuel Alejandro Gonzalez Navarrete
dc.contributor.referee4.fl_str_mv Paulo Afonso Faria da Veiga
dc.contributor.author.fl_str_mv Ngo Phuoc Nguyen Ngoc
contributor_str_mv Vladimir Belitsky
Gunter Markus Schutz
Anatoli Iambartsev
José Ricardo Gonçalves de Mendonça
Manuel Alejandro Gonzalez Navarrete
Paulo Afonso Faria da Veiga
description The processes studied are Interacting Particle Systems in which particles move on sites of a lattice with periodic boundary conditions. The particle interaction rule is the exclusion rule. Among the two classes of processes studied here, the first class is a generalization of the Exclusion Process. The generalization amounts to an extension of the dependence upon neighboring particles of a particle transition rate. In the other class of the processes studied, we substituted particles with rods that occupy several contiguous sites, defined that each rod may be in one of two possible states, and defined the rules for state switch. The transition rules for rod motion are similar to the rules for particles in our generalizations of the Exclusion Process. For each process constructed, we studied the conditions that ensure that its time-invariant distribution is an Ising type measure. The results relate the rates of motion and their ranges to the range and the interactions expressed in the potential function of Ising measure. We also studied the behavior of the process when they evolve in their respective invariant states. The study revealed novel phenomena in the behavior of particle flux as a function of particle density. One of the phenomena is non-monotonicity which has not been observed in the Classical Exclusion Process. For the interacting rod system, we revealed and explained the effect of cooperative pushing that had been observed previously in the RNA transcription process executed by RNA polymerase enzymes. Our results apply to understanding this biological process and to the traffic of cars that are traditionally modeled by the Exclusion Process.
publishDate 2022
dc.date.issued.fl_str_mv 2022-05-09
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
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dc.identifier.uri.fl_str_mv https://doi.org/10.11606/T.45.2022.tde-24052023-114357
url https://doi.org/10.11606/T.45.2022.tde-24052023-114357
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Universidade de São Paulo
dc.publisher.program.fl_str_mv Estatística
dc.publisher.initials.fl_str_mv USP
dc.publisher.country.fl_str_mv BR
publisher.none.fl_str_mv Universidade de São Paulo
dc.source.none.fl_str_mv reponame:Biblioteca Digital de Teses e Dissertações da USP
instname:Universidade de São Paulo (USP)
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reponame_str Biblioteca Digital de Teses e Dissertações da USP
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da USP - Universidade de São Paulo (USP)
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