Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.

Detalhes bibliográficos
Autor(a) principal: PÉRTILLE, F.
Data de Publicação: 2015
Outros Autores: ZANELLA, R., FELÍCIO, A. M., LEDUR, M. C., PEIXOTO, J. de O., COUTINHO, L. L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1025835
http://dx.doi.org/10.4238/2015.September.9.11
Resumo: Genetic selection for production traits has resulted in a rapid improvement in animal performance and development. Previous studies have mapped quantitative trait loci for body weight at 35 and 41 days, and drum and thigh yield, onto chicken chromosome 4. We investigated this region for single nucleotide polymorphisms and their associations with important economic traits. Three positional candidate genes were studied: KLF3 (Krüeppel-like factor 3), SLIT2 (Slit homolog 2), and PPARGC1A (peroxisome proliferator-activated receptor gamma, coactivator 1 alpha). Fragment sequencing of these genes was conducted in 11 F1 animals, and one polymorphism in each gene was selected and genotyped in an F2 population (N = 276) and a paternal broiler line TT (N = 840). Associations were identified with growth, carcass, and fat traits in the F2 and the paternal line (P < 0.05). Using single markers in both the F2 and the TT line, KLF3 was associated with weight gain (P < 0.05), PPPARGC1A was associated with liver and wing-parts weights and yields (P < 0.05), and SLIT2 was associated with back yield (P < 0.05) and fat traits (P < 0.05). Using multiple markers, KLF3 lost its significance in both populations, and SLIT2 was associated with feed conversion only in the TT population (P < 0.05). The QTLs mapped in the F2 population could be partly explained by PPARGC1A and SLIT2, which were associated with body weight at 35 and 41 days, respectively, and with drum and thigh yield in the same population. The results of this study indicate the importance of these genes for production traits.
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spelling Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.BroilerGenetica animalGenomaPolimorfismo genéticoAve domésticaPolymorphismGallus gallusGenetic polymorphismQuantitative trait lociGenetic selection for production traits has resulted in a rapid improvement in animal performance and development. Previous studies have mapped quantitative trait loci for body weight at 35 and 41 days, and drum and thigh yield, onto chicken chromosome 4. We investigated this region for single nucleotide polymorphisms and their associations with important economic traits. Three positional candidate genes were studied: KLF3 (Krüeppel-like factor 3), SLIT2 (Slit homolog 2), and PPARGC1A (peroxisome proliferator-activated receptor gamma, coactivator 1 alpha). Fragment sequencing of these genes was conducted in 11 F1 animals, and one polymorphism in each gene was selected and genotyped in an F2 population (N = 276) and a paternal broiler line TT (N = 840). Associations were identified with growth, carcass, and fat traits in the F2 and the paternal line (P < 0.05). Using single markers in both the F2 and the TT line, KLF3 was associated with weight gain (P < 0.05), PPPARGC1A was associated with liver and wing-parts weights and yields (P < 0.05), and SLIT2 was associated with back yield (P < 0.05) and fat traits (P < 0.05). Using multiple markers, KLF3 lost its significance in both populations, and SLIT2 was associated with feed conversion only in the TT population (P < 0.05). The QTLs mapped in the F2 population could be partly explained by PPARGC1A and SLIT2, which were associated with body weight at 35 and 41 days, respectively, and with drum and thigh yield in the same population. The results of this study indicate the importance of these genes for production traits.FÁBIO PÉRTILLE, ESALQ; RICARDO ZANELLA, CNPq; ANDRESSA MARIA FELÍCIO, ESALQ; MONICA CORREA LEDUR, CNPSA; JANE DE OLIVEIRA PEIXOTO, CNPSA; LUIZ LEHMANN COUTINHO, ESALQ.PÉRTILLE, F.ZANELLA, R.FELÍCIO, A. M.LEDUR, M. C.PEIXOTO, J. de O.COUTINHO, L. L.2018-01-26T23:41:58Z2018-01-26T23:41:58Z2015-10-0520152018-01-26T23:41:58Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 14, n. 3, p. 10717-10728, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1025835http://dx.doi.org/10.4238/2015.September.9.11enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2018-01-26T23:42:05Zoai:www.alice.cnptia.embrapa.br:doc/1025835Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542018-01-26T23:42:05falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542018-01-26T23:42:05Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
title Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
spellingShingle Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
PÉRTILLE, F.
Broiler
Genetica animal
Genoma
Polimorfismo genético
Ave doméstica
Polymorphism
Gallus gallus
Genetic polymorphism
Quantitative trait loci
title_short Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
title_full Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
title_fullStr Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
title_full_unstemmed Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
title_sort Identification of polymorphisms associated with production traits on chicken (Gallus gallus) chromosome 4.
author PÉRTILLE, F.
author_facet PÉRTILLE, F.
ZANELLA, R.
FELÍCIO, A. M.
LEDUR, M. C.
PEIXOTO, J. de O.
COUTINHO, L. L.
author_role author
author2 ZANELLA, R.
FELÍCIO, A. M.
LEDUR, M. C.
PEIXOTO, J. de O.
COUTINHO, L. L.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv FÁBIO PÉRTILLE, ESALQ; RICARDO ZANELLA, CNPq; ANDRESSA MARIA FELÍCIO, ESALQ; MONICA CORREA LEDUR, CNPSA; JANE DE OLIVEIRA PEIXOTO, CNPSA; LUIZ LEHMANN COUTINHO, ESALQ.
dc.contributor.author.fl_str_mv PÉRTILLE, F.
ZANELLA, R.
FELÍCIO, A. M.
LEDUR, M. C.
PEIXOTO, J. de O.
COUTINHO, L. L.
dc.subject.por.fl_str_mv Broiler
Genetica animal
Genoma
Polimorfismo genético
Ave doméstica
Polymorphism
Gallus gallus
Genetic polymorphism
Quantitative trait loci
topic Broiler
Genetica animal
Genoma
Polimorfismo genético
Ave doméstica
Polymorphism
Gallus gallus
Genetic polymorphism
Quantitative trait loci
description Genetic selection for production traits has resulted in a rapid improvement in animal performance and development. Previous studies have mapped quantitative trait loci for body weight at 35 and 41 days, and drum and thigh yield, onto chicken chromosome 4. We investigated this region for single nucleotide polymorphisms and their associations with important economic traits. Three positional candidate genes were studied: KLF3 (Krüeppel-like factor 3), SLIT2 (Slit homolog 2), and PPARGC1A (peroxisome proliferator-activated receptor gamma, coactivator 1 alpha). Fragment sequencing of these genes was conducted in 11 F1 animals, and one polymorphism in each gene was selected and genotyped in an F2 population (N = 276) and a paternal broiler line TT (N = 840). Associations were identified with growth, carcass, and fat traits in the F2 and the paternal line (P < 0.05). Using single markers in both the F2 and the TT line, KLF3 was associated with weight gain (P < 0.05), PPPARGC1A was associated with liver and wing-parts weights and yields (P < 0.05), and SLIT2 was associated with back yield (P < 0.05) and fat traits (P < 0.05). Using multiple markers, KLF3 lost its significance in both populations, and SLIT2 was associated with feed conversion only in the TT population (P < 0.05). The QTLs mapped in the F2 population could be partly explained by PPARGC1A and SLIT2, which were associated with body weight at 35 and 41 days, respectively, and with drum and thigh yield in the same population. The results of this study indicate the importance of these genes for production traits.
publishDate 2015
dc.date.none.fl_str_mv 2015-10-05
2015
2018-01-26T23:41:58Z
2018-01-26T23:41:58Z
2018-01-26T23:41:58Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 14, n. 3, p. 10717-10728, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1025835
http://dx.doi.org/10.4238/2015.September.9.11
identifier_str_mv Genetics and Molecular Research, v. 14, n. 3, p. 10717-10728, 2015.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1025835
http://dx.doi.org/10.4238/2015.September.9.11
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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