Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population

Detalhes bibliográficos
Autor(a) principal: Ambo, Marcel
Data de Publicação: 2008
Outros Autores: Campos, Raquel de Lello Rocha, Moura, Ana Sílvia Meira Tavares, Boschiero, Clarissa, Rosário, Millor Fernandes do, Ledur, Mônica Corrêa, Nones, Kátia, Coutinho, Luiz Lehmann
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: https://www.revistas.usp.br/sa/article/view/22320
Resumo: A linkage map is essential not only for quantitative trait loci (QTL) mapping, but also for the organization and location of genes along the chromosomes. The present study is part of a project whose major objective is, besides from construction the linkage maps, the whole genome scan for mapping QTL for performance traits in the Brazilian experimental chicken population. Linkage maps of chicken chromosomes 6 to 8, 11 and 13 were constructed based on this population. The population was developed from two generations of crossbreeding between a broiler and a layer line. Fifty-one microsatellite markers were tested, from which 28 were informative: 4, 8, 7, 4 and 5 for chromosomes 6, 7, 8, 11 and 13, respectively. A SNP located in the leptin receptor gene was included for chromosome 8. Ten parental, 8 F1 and 459 F2 chickens from five full-sib families were genotyped with these markers. The number of total informative meioses per locus varied from 232 to 862, and the number of phase-known informative meioses from 0 to 764. Marker orders in the chromosomes coincided with those of the chicken consensus map, except for markers ADL0147 and MCW0213, on chromosome 13, which were inverted. The reduced number of phase-known informative meioses for ADL0147 (150) may be pointed out as a possible cause for this inversion, apart from the relative short distance between the two markers involved in the inversion (10.5 cM).
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spelling Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population Mapas de ligação dos cromossomos 6, 7, 8, 11 e 13 de uma população brasileira de galinha Gallus galluslocos de características quantitativas (QTLs)mapas genéticosmarcadores microssatélitesmelhoramento animalGallus gallusquantitative trait loci (QTL)genetic mapsmicrosatellite markersanimal breeding A linkage map is essential not only for quantitative trait loci (QTL) mapping, but also for the organization and location of genes along the chromosomes. The present study is part of a project whose major objective is, besides from construction the linkage maps, the whole genome scan for mapping QTL for performance traits in the Brazilian experimental chicken population. Linkage maps of chicken chromosomes 6 to 8, 11 and 13 were constructed based on this population. The population was developed from two generations of crossbreeding between a broiler and a layer line. Fifty-one microsatellite markers were tested, from which 28 were informative: 4, 8, 7, 4 and 5 for chromosomes 6, 7, 8, 11 and 13, respectively. A SNP located in the leptin receptor gene was included for chromosome 8. Ten parental, 8 F1 and 459 F2 chickens from five full-sib families were genotyped with these markers. The number of total informative meioses per locus varied from 232 to 862, and the number of phase-known informative meioses from 0 to 764. Marker orders in the chromosomes coincided with those of the chicken consensus map, except for markers ADL0147 and MCW0213, on chromosome 13, which were inverted. The reduced number of phase-known informative meioses for ADL0147 (150) may be pointed out as a possible cause for this inversion, apart from the relative short distance between the two markers involved in the inversion (10.5 cM). O mapa de ligação além de ser fundamental no mapeamento de locos de características quantitativas (QTLs) é importante na organização e localização de genes distribuídos ao longo dos cromossomos. O presente estudo é parte de um trabalho cujo objetivo maior, é a análise de mapeamento de QTLs para características de desempenho no genoma de uma população experimental desenvolvida no Brasil. Com base nesta população foram construídos os mapas de ligação dos cromossomos 6 a 8, 11 e 13 da galinha. A população foi desenvolvida a partir de duas gerações de cruzamentos entre uma linhagem de corte e uma de postura. Foram testados 51 marcadores microssatélites, dos quais 28 foram informativos: 4, 8, 7, 4 e 5 dos cromossomos 6, 7, 8, 11 e 13, respectivamente. Um SNP localizado no gene do receptor da leptina foi incluído no cromossomo 8. Os 10 parentais, 8 F1 e um total de 459 aves F2 de cinco famílias de irmãos completos foram genotipados com estes marcadores. O número de meioses informativas totais por loco variou de 232 a 862 e o de meioses informativas de fase conhecida de 0 a 764. A ordem dos marcadores nos cromossomos coincidiu com a do mapa consenso da galinha, com exceção dos marcadores ADL0147 e MCW0213 do cromossomo 13 que tiveram sua ordem invertida. O número reduzido de meioses informativas de fase conhecida para o marcador ADL0147 (150) pode ser apontado como uma possível causa para a inversão, além da relativa proximidade entre os dois marcadores envolvidos na inversão (10,5 cM). Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz2008-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://www.revistas.usp.br/sa/article/view/2232010.1590/S0103-90162008000500001Scientia Agricola; v. 65 n. 5 (2008); 447-452Scientia Agricola; Vol. 65 No. 5 (2008); 447-452Scientia Agricola; Vol. 65 Núm. 5 (2008); 447-4521678-992X0103-9016reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USPenghttps://www.revistas.usp.br/sa/article/view/22320/24344Copyright (c) 2015 Scientia Agricolainfo:eu-repo/semantics/openAccessAmbo, MarcelCampos, Raquel de Lello RochaMoura, Ana Sílvia Meira TavaresBoschiero, ClarissaRosário, Millor Fernandes doLedur, Mônica CorrêaNones, KátiaCoutinho, Luiz Lehmann2015-07-07T18:05:53Zoai:revistas.usp.br:article/22320Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2015-07-07T18:05:53Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
Mapas de ligação dos cromossomos 6, 7, 8, 11 e 13 de uma população brasileira de galinha
title Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
spellingShingle Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
Ambo, Marcel
Gallus gallus
locos de características quantitativas (QTLs)
mapas genéticos
marcadores microssatélites
melhoramento animal
Gallus gallus
quantitative trait loci (QTL)
genetic maps
microsatellite markers
animal breeding
title_short Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
title_full Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
title_fullStr Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
title_full_unstemmed Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
title_sort Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
author Ambo, Marcel
author_facet Ambo, Marcel
Campos, Raquel de Lello Rocha
Moura, Ana Sílvia Meira Tavares
Boschiero, Clarissa
Rosário, Millor Fernandes do
Ledur, Mônica Corrêa
Nones, Kátia
Coutinho, Luiz Lehmann
author_role author
author2 Campos, Raquel de Lello Rocha
Moura, Ana Sílvia Meira Tavares
Boschiero, Clarissa
Rosário, Millor Fernandes do
Ledur, Mônica Corrêa
Nones, Kátia
Coutinho, Luiz Lehmann
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ambo, Marcel
Campos, Raquel de Lello Rocha
Moura, Ana Sílvia Meira Tavares
Boschiero, Clarissa
Rosário, Millor Fernandes do
Ledur, Mônica Corrêa
Nones, Kátia
Coutinho, Luiz Lehmann
dc.subject.por.fl_str_mv Gallus gallus
locos de características quantitativas (QTLs)
mapas genéticos
marcadores microssatélites
melhoramento animal
Gallus gallus
quantitative trait loci (QTL)
genetic maps
microsatellite markers
animal breeding
topic Gallus gallus
locos de características quantitativas (QTLs)
mapas genéticos
marcadores microssatélites
melhoramento animal
Gallus gallus
quantitative trait loci (QTL)
genetic maps
microsatellite markers
animal breeding
description A linkage map is essential not only for quantitative trait loci (QTL) mapping, but also for the organization and location of genes along the chromosomes. The present study is part of a project whose major objective is, besides from construction the linkage maps, the whole genome scan for mapping QTL for performance traits in the Brazilian experimental chicken population. Linkage maps of chicken chromosomes 6 to 8, 11 and 13 were constructed based on this population. The population was developed from two generations of crossbreeding between a broiler and a layer line. Fifty-one microsatellite markers were tested, from which 28 were informative: 4, 8, 7, 4 and 5 for chromosomes 6, 7, 8, 11 and 13, respectively. A SNP located in the leptin receptor gene was included for chromosome 8. Ten parental, 8 F1 and 459 F2 chickens from five full-sib families were genotyped with these markers. The number of total informative meioses per locus varied from 232 to 862, and the number of phase-known informative meioses from 0 to 764. Marker orders in the chromosomes coincided with those of the chicken consensus map, except for markers ADL0147 and MCW0213, on chromosome 13, which were inverted. The reduced number of phase-known informative meioses for ADL0147 (150) may be pointed out as a possible cause for this inversion, apart from the relative short distance between the two markers involved in the inversion (10.5 cM).
publishDate 2008
dc.date.none.fl_str_mv 2008-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://www.revistas.usp.br/sa/article/view/22320
10.1590/S0103-90162008000500001
url https://www.revistas.usp.br/sa/article/view/22320
identifier_str_mv 10.1590/S0103-90162008000500001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://www.revistas.usp.br/sa/article/view/22320/24344
dc.rights.driver.fl_str_mv Copyright (c) 2015 Scientia Agricola
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2015 Scientia Agricola
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz
publisher.none.fl_str_mv Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz
dc.source.none.fl_str_mv Scientia Agricola; v. 65 n. 5 (2008); 447-452
Scientia Agricola; Vol. 65 No. 5 (2008); 447-452
Scientia Agricola; Vol. 65 Núm. 5 (2008); 447-452
1678-992X
0103-9016
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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