Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus

Detalhes bibliográficos
Autor(a) principal: Toma, Gustavo A.
Data de Publicação: 2023
Outros Autores: dos Santos, Natália [UNESP], dos Santos, Rodrigo [UNESP], Rab, Petr, Kretschmer, Rafael, Ezaz, Tariq, Bertollo, Luiz A. C., Liehr, Thomas, Porto-Foresti, Fábio [UNESP], Hatanaka, Terumi, Tanomtong, Alongklod, Utsunomia, Ricardo [UNESP], Cioffi, Marcelo B.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/ijms24109005
http://hdl.handle.net/11449/250002
Resumo: Scleropages formosus (Osteoglossiformes, Teleostei) represents one of the most valued ornamental fishes, yet it is critically endangered due to overexploitation and habitat destruction. This species encompasses three major color groups that naturally occur in allopatric populations, but the evolutionary and taxonomic relationships of S. formosus color varieties remain uncertain. Here, we utilized a range of molecular cytogenetic techniques to characterize the karyotypes of five S. formosus color phenotypes, which correspond to naturally occurring variants: the red ones (Super Red); the golden ones (Golden Crossback and Highback Golden); the green ones (Asian Green and Yellow Tail Silver). Additionally, we describe the satellitome of S. formosus (Highback Golden) by applying a high-throughput sequencing technology. All color phenotypes possessed the same karyotype structure 2n = 50 (8m/sm + 42st/a) and distribution of SatDNAs, but different chromosomal locations of rDNAs, which were involved in a chromosome size polymorphism. Our results show indications of population genetic structure and microstructure differences in karyotypes of the color phenotypes. However, the findings do not clearly back up the hypothesis that there are discrete lineages or evolutionary units among the color phenotypes of S. formosus, but another case of interspecific chromosome stasis cannot be excluded.
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spelling Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosuschromosomecytogenomicsmolecular cytogeneticsOsteoglossiformesSatDNAScleropages formosus (Osteoglossiformes, Teleostei) represents one of the most valued ornamental fishes, yet it is critically endangered due to overexploitation and habitat destruction. This species encompasses three major color groups that naturally occur in allopatric populations, but the evolutionary and taxonomic relationships of S. formosus color varieties remain uncertain. Here, we utilized a range of molecular cytogenetic techniques to characterize the karyotypes of five S. formosus color phenotypes, which correspond to naturally occurring variants: the red ones (Super Red); the golden ones (Golden Crossback and Highback Golden); the green ones (Asian Green and Yellow Tail Silver). Additionally, we describe the satellitome of S. formosus (Highback Golden) by applying a high-throughput sequencing technology. All color phenotypes possessed the same karyotype structure 2n = 50 (8m/sm + 42st/a) and distribution of SatDNAs, but different chromosomal locations of rDNAs, which were involved in a chromosome size polymorphism. Our results show indications of population genetic structure and microstructure differences in karyotypes of the color phenotypes. However, the findings do not clearly back up the hypothesis that there are discrete lineages or evolutionary units among the color phenotypes of S. formosus, but another case of interspecific chromosome stasis cannot be excluded.German-Israeli Foundation for Scientific Research and DevelopmentDepartamento de Genética e Evolução Universidade Federal de São Carlos, SPFaculdade de Ciências UNESP, SPLaboratory of Fish Genetics Institute of Animal Physiology and Genetics Czech Academy of Sciences, Rumburská 89Departamento de Ecologia Zoologia e Genética Universidade Federal de Pelotas, RSInstitute for Aplied Ecology University of CanberraInstitute of Human Genetics University Hospital JenaDepartment of Biology Faculty of Science Khon Kaen University, Khon KaenFaculdade de Ciências UNESP, SPGerman-Israeli Foundation for Scientific Research and Development: 512648189Universidade Federal de São Carlos (UFSCar)Universidade Estadual Paulista (UNESP)Czech Academy of SciencesUniversidade Federal de PelotasUniversity of CanberraUniversity Hospital JenaKhon Kaen UniversityToma, Gustavo A.dos Santos, Natália [UNESP]dos Santos, Rodrigo [UNESP]Rab, PetrKretschmer, RafaelEzaz, TariqBertollo, Luiz A. C.Liehr, ThomasPorto-Foresti, Fábio [UNESP]Hatanaka, TerumiTanomtong, AlongklodUtsunomia, Ricardo [UNESP]Cioffi, Marcelo B.2023-07-29T16:15:05Z2023-07-29T16:15:05Z2023-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/ijms24109005International Journal of Molecular Sciences, v. 24, n. 10, 2023.1422-00671661-6596http://hdl.handle.net/11449/25000210.3390/ijms241090052-s2.0-85160446965Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Molecular Sciencesinfo:eu-repo/semantics/openAccess2024-04-23T15:23:50Zoai:repositorio.unesp.br:11449/250002Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-04-23T15:23:50Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
title Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
spellingShingle Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
Toma, Gustavo A.
chromosome
cytogenomics
molecular cytogenetics
Osteoglossiformes
SatDNA
title_short Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
title_full Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
title_fullStr Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
title_full_unstemmed Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
title_sort Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus
author Toma, Gustavo A.
author_facet Toma, Gustavo A.
dos Santos, Natália [UNESP]
dos Santos, Rodrigo [UNESP]
Rab, Petr
Kretschmer, Rafael
Ezaz, Tariq
Bertollo, Luiz A. C.
Liehr, Thomas
Porto-Foresti, Fábio [UNESP]
Hatanaka, Terumi
Tanomtong, Alongklod
Utsunomia, Ricardo [UNESP]
Cioffi, Marcelo B.
author_role author
author2 dos Santos, Natália [UNESP]
dos Santos, Rodrigo [UNESP]
Rab, Petr
Kretschmer, Rafael
Ezaz, Tariq
Bertollo, Luiz A. C.
Liehr, Thomas
Porto-Foresti, Fábio [UNESP]
Hatanaka, Terumi
Tanomtong, Alongklod
Utsunomia, Ricardo [UNESP]
Cioffi, Marcelo B.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de São Carlos (UFSCar)
Universidade Estadual Paulista (UNESP)
Czech Academy of Sciences
Universidade Federal de Pelotas
University of Canberra
University Hospital Jena
Khon Kaen University
dc.contributor.author.fl_str_mv Toma, Gustavo A.
dos Santos, Natália [UNESP]
dos Santos, Rodrigo [UNESP]
Rab, Petr
Kretschmer, Rafael
Ezaz, Tariq
Bertollo, Luiz A. C.
Liehr, Thomas
Porto-Foresti, Fábio [UNESP]
Hatanaka, Terumi
Tanomtong, Alongklod
Utsunomia, Ricardo [UNESP]
Cioffi, Marcelo B.
dc.subject.por.fl_str_mv chromosome
cytogenomics
molecular cytogenetics
Osteoglossiformes
SatDNA
topic chromosome
cytogenomics
molecular cytogenetics
Osteoglossiformes
SatDNA
description Scleropages formosus (Osteoglossiformes, Teleostei) represents one of the most valued ornamental fishes, yet it is critically endangered due to overexploitation and habitat destruction. This species encompasses three major color groups that naturally occur in allopatric populations, but the evolutionary and taxonomic relationships of S. formosus color varieties remain uncertain. Here, we utilized a range of molecular cytogenetic techniques to characterize the karyotypes of five S. formosus color phenotypes, which correspond to naturally occurring variants: the red ones (Super Red); the golden ones (Golden Crossback and Highback Golden); the green ones (Asian Green and Yellow Tail Silver). Additionally, we describe the satellitome of S. formosus (Highback Golden) by applying a high-throughput sequencing technology. All color phenotypes possessed the same karyotype structure 2n = 50 (8m/sm + 42st/a) and distribution of SatDNAs, but different chromosomal locations of rDNAs, which were involved in a chromosome size polymorphism. Our results show indications of population genetic structure and microstructure differences in karyotypes of the color phenotypes. However, the findings do not clearly back up the hypothesis that there are discrete lineages or evolutionary units among the color phenotypes of S. formosus, but another case of interspecific chromosome stasis cannot be excluded.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T16:15:05Z
2023-07-29T16:15:05Z
2023-05-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/ijms24109005
International Journal of Molecular Sciences, v. 24, n. 10, 2023.
1422-0067
1661-6596
http://hdl.handle.net/11449/250002
10.3390/ijms24109005
2-s2.0-85160446965
url http://dx.doi.org/10.3390/ijms24109005
http://hdl.handle.net/11449/250002
identifier_str_mv International Journal of Molecular Sciences, v. 24, n. 10, 2023.
1422-0067
1661-6596
10.3390/ijms24109005
2-s2.0-85160446965
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv International Journal of Molecular Sciences
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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