A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures

Detalhes bibliográficos
Autor(a) principal: Mailier,J.
Data de Publicação: 2010
Outros Autores: Wouwer,A. Vande
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Journal of Chemical Engineering
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322010000300003
Resumo: The purpose of this paper is to report on the development of a procedure for inferring black-box, yet biologically interpretable, dynamic models of bioprocesses based on sets of measurements of a few external components (biomass, substrates, and products of interest). The procedure has three main steps: (a) the determination of the number of macroscopic biological reactions linking the measured components; (b) the estimation of a first reaction scheme, which has interesting mathematical properties, but might lack a biological interpretation; and (c) the "projection" (or transformation) of this reaction scheme onto a biologically-consistent scheme. The advantage of the method is that it allows the fast prototyping of models for the culture of microorganisms that are not well documented. The good performance of the third step of the method is demonstrated by application to an example of microalgal culture.
id ABEQ-1_14b74fda40d077fe0b37abd148ed45b4
oai_identifier_str oai:scielo:S0104-66322010000300003
network_acronym_str ABEQ-1
network_name_str Brazilian Journal of Chemical Engineering
repository_id_str
spelling A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae culturesReaction networksMathematical modelingParameter estimationBioprocessesThe purpose of this paper is to report on the development of a procedure for inferring black-box, yet biologically interpretable, dynamic models of bioprocesses based on sets of measurements of a few external components (biomass, substrates, and products of interest). The procedure has three main steps: (a) the determination of the number of macroscopic biological reactions linking the measured components; (b) the estimation of a first reaction scheme, which has interesting mathematical properties, but might lack a biological interpretation; and (c) the "projection" (or transformation) of this reaction scheme onto a biologically-consistent scheme. The advantage of the method is that it allows the fast prototyping of models for the culture of microorganisms that are not well documented. The good performance of the third step of the method is demonstrated by application to an example of microalgal culture.Brazilian Society of Chemical Engineering2010-09-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322010000300003Brazilian Journal of Chemical Engineering v.27 n.3 2010reponame:Brazilian Journal of Chemical Engineeringinstname:Associação Brasileira de Engenharia Química (ABEQ)instacron:ABEQ10.1590/S0104-66322010000300003info:eu-repo/semantics/openAccessMailier,J.Wouwer,A. Vandeeng2010-11-29T00:00:00Zoai:scielo:S0104-66322010000300003Revistahttps://www.scielo.br/j/bjce/https://old.scielo.br/oai/scielo-oai.phprgiudici@usp.br||rgiudici@usp.br1678-43830104-6632opendoar:2010-11-29T00:00Brazilian Journal of Chemical Engineering - Associação Brasileira de Engenharia Química (ABEQ)false
dc.title.none.fl_str_mv A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
title A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
spellingShingle A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
Mailier,J.
Reaction networks
Mathematical modeling
Parameter estimation
Bioprocesses
title_short A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
title_full A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
title_fullStr A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
title_full_unstemmed A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
title_sort A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures
author Mailier,J.
author_facet Mailier,J.
Wouwer,A. Vande
author_role author
author2 Wouwer,A. Vande
author2_role author
dc.contributor.author.fl_str_mv Mailier,J.
Wouwer,A. Vande
dc.subject.por.fl_str_mv Reaction networks
Mathematical modeling
Parameter estimation
Bioprocesses
topic Reaction networks
Mathematical modeling
Parameter estimation
Bioprocesses
description The purpose of this paper is to report on the development of a procedure for inferring black-box, yet biologically interpretable, dynamic models of bioprocesses based on sets of measurements of a few external components (biomass, substrates, and products of interest). The procedure has three main steps: (a) the determination of the number of macroscopic biological reactions linking the measured components; (b) the estimation of a first reaction scheme, which has interesting mathematical properties, but might lack a biological interpretation; and (c) the "projection" (or transformation) of this reaction scheme onto a biologically-consistent scheme. The advantage of the method is that it allows the fast prototyping of models for the culture of microorganisms that are not well documented. The good performance of the third step of the method is demonstrated by application to an example of microalgal culture.
publishDate 2010
dc.date.none.fl_str_mv 2010-09-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322010000300003
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0104-66322010000300003
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0104-66322010000300003
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Brazilian Society of Chemical Engineering
publisher.none.fl_str_mv Brazilian Society of Chemical Engineering
dc.source.none.fl_str_mv Brazilian Journal of Chemical Engineering v.27 n.3 2010
reponame:Brazilian Journal of Chemical Engineering
instname:Associação Brasileira de Engenharia Química (ABEQ)
instacron:ABEQ
instname_str Associação Brasileira de Engenharia Química (ABEQ)
instacron_str ABEQ
institution ABEQ
reponame_str Brazilian Journal of Chemical Engineering
collection Brazilian Journal of Chemical Engineering
repository.name.fl_str_mv Brazilian Journal of Chemical Engineering - Associação Brasileira de Engenharia Química (ABEQ)
repository.mail.fl_str_mv rgiudici@usp.br||rgiudici@usp.br
_version_ 1754213173126234112