Bayesian estimation of genotypic and phenotypic correlations from crop variety trials

Detalhes bibliográficos
Autor(a) principal: Omer,Siraj Osman
Data de Publicação: 2016
Outros Autores: Abdalla,Abdel Wahab H, Mohammed,Mohammed H., Singh,Murari
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Crop Breeding and Applied Biotechnology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-70332016000100014
Resumo: Abstract Genotypic and phenotypic correlations are necessary for constructing indirect selection indices. Bayesian analysis, therefore, was applied to obtain posterior distributions of the correlations, and the estimates were compared with those under a frequentist approach. Three a priori distributions for standard deviation components based on uniform distribution, positive values from t- distribution, and positive values from normal distribution were examined, while a priori distribution for correlation was taken as a uniform distribution. The prior based on uniform was best found using the deviation information criterion. Data from sorghum genotypes evaluated in complete blocks in 2010-2011 in Northern Kordofan, Sudan, resulted in a posterior mean of 0.48 for genotypic correlation between seed yield and seed weight with posterior standard deviation of 0.24. Due to a wider inference base and the fact that it makes use of prior information, we recommend the Bayesian approach in estimation of genotypic correlations.
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spelling Bayesian estimation of genotypic and phenotypic correlations from crop variety trialsBayesian estimationgenotypic and phenotypic correlationsheritabilityR2WinBUGSAbstract Genotypic and phenotypic correlations are necessary for constructing indirect selection indices. Bayesian analysis, therefore, was applied to obtain posterior distributions of the correlations, and the estimates were compared with those under a frequentist approach. Three a priori distributions for standard deviation components based on uniform distribution, positive values from t- distribution, and positive values from normal distribution were examined, while a priori distribution for correlation was taken as a uniform distribution. The prior based on uniform was best found using the deviation information criterion. Data from sorghum genotypes evaluated in complete blocks in 2010-2011 in Northern Kordofan, Sudan, resulted in a posterior mean of 0.48 for genotypic correlation between seed yield and seed weight with posterior standard deviation of 0.24. Due to a wider inference base and the fact that it makes use of prior information, we recommend the Bayesian approach in estimation of genotypic correlations.Crop Breeding and Applied Biotechnology2016-03-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-70332016000100014Crop Breeding and Applied Biotechnology v.16 n.1 2016reponame:Crop Breeding and Applied Biotechnologyinstname:Sociedade Brasileira de Melhoramento de Plantasinstacron:CBAB10.1590/1984-70332016v16n1a3info:eu-repo/semantics/openAccessOmer,Siraj OsmanAbdalla,Abdel Wahab HMohammed,Mohammed H.Singh,Murarieng2016-04-19T00:00:00Zoai:scielo:S1984-70332016000100014Revistahttps://cbab.sbmp.org.br/#ONGhttps://old.scielo.br/oai/scielo-oai.phpcbabjournal@gmail.com||cbab@ufv.br1984-70331518-7853opendoar:2016-04-19T00:00Crop Breeding and Applied Biotechnology - Sociedade Brasileira de Melhoramento de Plantasfalse
dc.title.none.fl_str_mv Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
title Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
spellingShingle Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
Omer,Siraj Osman
Bayesian estimation
genotypic and phenotypic correlations
heritability
R2WinBUGS
title_short Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
title_full Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
title_fullStr Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
title_full_unstemmed Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
title_sort Bayesian estimation of genotypic and phenotypic correlations from crop variety trials
author Omer,Siraj Osman
author_facet Omer,Siraj Osman
Abdalla,Abdel Wahab H
Mohammed,Mohammed H.
Singh,Murari
author_role author
author2 Abdalla,Abdel Wahab H
Mohammed,Mohammed H.
Singh,Murari
author2_role author
author
author
dc.contributor.author.fl_str_mv Omer,Siraj Osman
Abdalla,Abdel Wahab H
Mohammed,Mohammed H.
Singh,Murari
dc.subject.por.fl_str_mv Bayesian estimation
genotypic and phenotypic correlations
heritability
R2WinBUGS
topic Bayesian estimation
genotypic and phenotypic correlations
heritability
R2WinBUGS
description Abstract Genotypic and phenotypic correlations are necessary for constructing indirect selection indices. Bayesian analysis, therefore, was applied to obtain posterior distributions of the correlations, and the estimates were compared with those under a frequentist approach. Three a priori distributions for standard deviation components based on uniform distribution, positive values from t- distribution, and positive values from normal distribution were examined, while a priori distribution for correlation was taken as a uniform distribution. The prior based on uniform was best found using the deviation information criterion. Data from sorghum genotypes evaluated in complete blocks in 2010-2011 in Northern Kordofan, Sudan, resulted in a posterior mean of 0.48 for genotypic correlation between seed yield and seed weight with posterior standard deviation of 0.24. Due to a wider inference base and the fact that it makes use of prior information, we recommend the Bayesian approach in estimation of genotypic correlations.
publishDate 2016
dc.date.none.fl_str_mv 2016-03-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-70332016000100014
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1984-70332016000100014
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1984-70332016v16n1a3
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Crop Breeding and Applied Biotechnology
publisher.none.fl_str_mv Crop Breeding and Applied Biotechnology
dc.source.none.fl_str_mv Crop Breeding and Applied Biotechnology v.16 n.1 2016
reponame:Crop Breeding and Applied Biotechnology
instname:Sociedade Brasileira de Melhoramento de Plantas
instacron:CBAB
instname_str Sociedade Brasileira de Melhoramento de Plantas
instacron_str CBAB
institution CBAB
reponame_str Crop Breeding and Applied Biotechnology
collection Crop Breeding and Applied Biotechnology
repository.name.fl_str_mv Crop Breeding and Applied Biotechnology - Sociedade Brasileira de Melhoramento de Plantas
repository.mail.fl_str_mv cbabjournal@gmail.com||cbab@ufv.br
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