The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid
Autor(a) principal: | |
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Data de Publicação: | 2008 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
Texto Completo: | https://www.arca.fiocruz.br/handle/icict/19391 |
Resumo: | Gonçalves, Marilda de Souza Fundação Oswaldo Cruz. Centro de Pesquisas Gonçalo Moniz. Salvador, BA, Brasil “Documento produzido em parceria ou por autor vinculado à Fiocruz, mas não consta à informação no documento”. aLaboratório de Genômica e Expressão – Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil bLaboratório de Ecotoxicologia, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, 13400-970, Piracicaba – SP, Brazil cLaboratório de Bioinformatica da Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, Brazil dLaboratório de Pesquisa em Microbiologia (LAPEM), Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana (UEFS), 44031-460, Feira de Santana – BA, Brazil eInstituto de Computação, Universidade Estadual de Campinas, 13084-971, Campinas – SP, Brazil fLudwig Institute For Cancer Research, 01509-010, São Paulo – SP, Brazil gDepartamento de Genética e Evolução e Laboratório de Genética Animal, Centro de Biologia Molecular e Engenharia Genética – CBMEG, Universidade Estadual de Campinas, 13035-875, Campinas – SP, Brazil hDepartamento de Parasitologia, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil iCEPLAC/CEPEC/SEFIT, 45600-970, Itabuna – BA, Brazil jLaboratoório de Biologia Molecular – Faculdade de Farmácia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil kLaboratório de Biologia Molecular – Departamento de Biologia Geral, Instituto de Biologia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil lSustainable Perennial Crops Laboratory, USDA-ARS, 10300 Baltimore, Av., BARC-W, Beltsville, MD 20740, USA mDepartamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, Brazil |
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Formighieri, Eduardo FernandesTiburcio, Ricardo AArmas, Eduardo Dutra deMedrano, Francisco JavierShimo, HugoCarels, NicolasGóes Neto, AristótelesCotomacci, CarolinaCarazzolle, Marcelo FalsarellaPinto, Naiara SardinhaThomazella, Daniela Paula de ToledoRincones, JohanaDigiampietri, LucianoCarraro, Dirce MariaEspin, Ana Maria Lima de AzeredoReis, Sérgio Furtado dosDeckmann, Ana CarolinaGramacho, KarinaGonçalves, Marilda de SouzaMoura Neto, José Pereira deBarbosa, Luciana VeigaMeinhardt, Lyndel WCascardo, Júlio Cezar de MattosPereira, Gonçalo Amarante Guimarães2017-06-14T16:04:19Z2017-06-14T16:04:19Z2008FORMIGHIERI, E. F. et al. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid. Mycological Research, v. 112, p. 1136–1152, 2008.0953-7562https://www.arca.fiocruz.br/handle/icict/1939110.1016/j.mycres.2008.04.014Gonçalves, Marilda de Souza Fundação Oswaldo Cruz. Centro de Pesquisas Gonçalo Moniz. Salvador, BA, Brasil “Documento produzido em parceria ou por autor vinculado à Fiocruz, mas não consta à informação no documento”. aLaboratório de Genômica e Expressão – Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil bLaboratório de Ecotoxicologia, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, 13400-970, Piracicaba – SP, Brazil cLaboratório de Bioinformatica da Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, Brazil dLaboratório de Pesquisa em Microbiologia (LAPEM), Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana (UEFS), 44031-460, Feira de Santana – BA, Brazil eInstituto de Computação, Universidade Estadual de Campinas, 13084-971, Campinas – SP, Brazil fLudwig Institute For Cancer Research, 01509-010, São Paulo – SP, Brazil gDepartamento de Genética e Evolução e Laboratório de Genética Animal, Centro de Biologia Molecular e Engenharia Genética – CBMEG, Universidade Estadual de Campinas, 13035-875, Campinas – SP, Brazil hDepartamento de Parasitologia, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil iCEPLAC/CEPEC/SEFIT, 45600-970, Itabuna – BA, Brazil jLaboratoório de Biologia Molecular – Faculdade de Farmácia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil kLaboratório de Biologia Molecular – Departamento de Biologia Geral, Instituto de Biologia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil lSustainable Perennial Crops Laboratory, USDA-ARS, 10300 Baltimore, Av., BARC-W, Beltsville, MD 20740, USA mDepartamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, BrazilBrazilian agencies CNPq (research fellowship to N. C.), Capes, CNPq Regional Genoma Program, SEAGRIm and FAPESP (No. 02/09280-1).Múltipla – ver em NotasWe present here the sequence of the mitochondrial genome of the basidiomycete phytopathogenic hemibiotrophic fungus Moniliophthora perniciosa, causal agent of the Witches' Broom Disease in Theobroma cacao. The DNA is a circular molecule of 109,103 base pairs, with 31.9% GC, and is the largest sequenced so far. This size is due essentially to the presence of numerous non-conserved hypothetical ORFs. It contains the 14 genes coding for proteins involved in the oxidative phosphorylation, the two rRNA genes, one ORF coding for a ribosomal protein (rps3), and a set of 26 tRNA genes that recognize codons for all amino acids. Seven homing endonucleases are located inside introns. Except atp8, all conserved known genes are in the same orientation. Phylogenetic analysis based on the cox genes agrees with the commonly accepted fungal taxonomy. An uncommon feature of this mitochondrial genome is the presence of a region that contains a set of four, relatively small, nested, inverted repeats enclosing two genes coding for polymerases with an invertron-type structure and three conserved hypothetical genes interpreted as the stable integration of a mitochondrial linear plasmid. The integration of this plasmid seems to be a recent evolutionary event that could have implications in fungal biology. This sequence is available under GenBank accession number AY376688.engElsevierBasidiomycotaUso de códonCrinipellis perniciosaGenômicaMarasmiaceaeDoença das vassouras das bruxasBasidiomycotaCodon usageCrinipellis perniciosaGenomicsMarasmiaceaeWitches’ broom diseaseThe mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmidinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/19391/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALFormighieri E The mitochondrial genome of the ....pdfFormighieri E The mitochondrial genome of the 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dc.title.pt_BR.fl_str_mv |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
title |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
spellingShingle |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid Formighieri, Eduardo Fernandes Basidiomycota Uso de códon Crinipellis perniciosa Genômica Marasmiaceae Doença das vassouras das bruxas Basidiomycota Codon usage Crinipellis perniciosa Genomics Marasmiaceae Witches’ broom disease |
title_short |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
title_full |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
title_fullStr |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
title_full_unstemmed |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
title_sort |
The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid |
author |
Formighieri, Eduardo Fernandes |
author_facet |
Formighieri, Eduardo Fernandes Tiburcio, Ricardo A Armas, Eduardo Dutra de Medrano, Francisco Javier Shimo, Hugo Carels, Nicolas Góes Neto, Aristóteles Cotomacci, Carolina Carazzolle, Marcelo Falsarella Pinto, Naiara Sardinha Thomazella, Daniela Paula de Toledo Rincones, Johana Digiampietri, Luciano Carraro, Dirce Maria Espin, Ana Maria Lima de Azeredo Reis, Sérgio Furtado dos Deckmann, Ana Carolina Gramacho, Karina Gonçalves, Marilda de Souza Moura Neto, José Pereira de Barbosa, Luciana Veiga Meinhardt, Lyndel W Cascardo, Júlio Cezar de Mattos Pereira, Gonçalo Amarante Guimarães |
author_role |
author |
author2 |
Tiburcio, Ricardo A Armas, Eduardo Dutra de Medrano, Francisco Javier Shimo, Hugo Carels, Nicolas Góes Neto, Aristóteles Cotomacci, Carolina Carazzolle, Marcelo Falsarella Pinto, Naiara Sardinha Thomazella, Daniela Paula de Toledo Rincones, Johana Digiampietri, Luciano Carraro, Dirce Maria Espin, Ana Maria Lima de Azeredo Reis, Sérgio Furtado dos Deckmann, Ana Carolina Gramacho, Karina Gonçalves, Marilda de Souza Moura Neto, José Pereira de Barbosa, Luciana Veiga Meinhardt, Lyndel W Cascardo, Júlio Cezar de Mattos Pereira, Gonçalo Amarante Guimarães |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Formighieri, Eduardo Fernandes Tiburcio, Ricardo A Armas, Eduardo Dutra de Medrano, Francisco Javier Shimo, Hugo Carels, Nicolas Góes Neto, Aristóteles Cotomacci, Carolina Carazzolle, Marcelo Falsarella Pinto, Naiara Sardinha Thomazella, Daniela Paula de Toledo Rincones, Johana Digiampietri, Luciano Carraro, Dirce Maria Espin, Ana Maria Lima de Azeredo Reis, Sérgio Furtado dos Deckmann, Ana Carolina Gramacho, Karina Gonçalves, Marilda de Souza Moura Neto, José Pereira de Barbosa, Luciana Veiga Meinhardt, Lyndel W Cascardo, Júlio Cezar de Mattos Pereira, Gonçalo Amarante Guimarães |
dc.subject.other.pt_BR.fl_str_mv |
Basidiomycota Uso de códon Crinipellis perniciosa Genômica Marasmiaceae Doença das vassouras das bruxas |
topic |
Basidiomycota Uso de códon Crinipellis perniciosa Genômica Marasmiaceae Doença das vassouras das bruxas Basidiomycota Codon usage Crinipellis perniciosa Genomics Marasmiaceae Witches’ broom disease |
dc.subject.en.pt_BR.fl_str_mv |
Basidiomycota Codon usage Crinipellis perniciosa Genomics Marasmiaceae Witches’ broom disease |
description |
Gonçalves, Marilda de Souza Fundação Oswaldo Cruz. Centro de Pesquisas Gonçalo Moniz. Salvador, BA, Brasil “Documento produzido em parceria ou por autor vinculado à Fiocruz, mas não consta à informação no documento”. aLaboratório de Genômica e Expressão – Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil bLaboratório de Ecotoxicologia, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, 13400-970, Piracicaba – SP, Brazil cLaboratório de Bioinformatica da Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, Brazil dLaboratório de Pesquisa em Microbiologia (LAPEM), Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana (UEFS), 44031-460, Feira de Santana – BA, Brazil eInstituto de Computação, Universidade Estadual de Campinas, 13084-971, Campinas – SP, Brazil fLudwig Institute For Cancer Research, 01509-010, São Paulo – SP, Brazil gDepartamento de Genética e Evolução e Laboratório de Genética Animal, Centro de Biologia Molecular e Engenharia Genética – CBMEG, Universidade Estadual de Campinas, 13035-875, Campinas – SP, Brazil hDepartamento de Parasitologia, Instituto de Biologia, Universidade Estadual de Campinas, 13083-970, Campinas – SP, Brazil iCEPLAC/CEPEC/SEFIT, 45600-970, Itabuna – BA, Brazil jLaboratoório de Biologia Molecular – Faculdade de Farmácia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil kLaboratório de Biologia Molecular – Departamento de Biologia Geral, Instituto de Biologia, Universidade Federal da Bahia, 40170-290, Salvador – BA, Brazil lSustainable Perennial Crops Laboratory, USDA-ARS, 10300 Baltimore, Av., BARC-W, Beltsville, MD 20740, USA mDepartamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, 45650-000, Ilhéus – BA, Brazil |
publishDate |
2008 |
dc.date.issued.fl_str_mv |
2008 |
dc.date.accessioned.fl_str_mv |
2017-06-14T16:04:19Z |
dc.date.available.fl_str_mv |
2017-06-14T16:04:19Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
FORMIGHIERI, E. F. et al. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid. Mycological Research, v. 112, p. 1136–1152, 2008. |
dc.identifier.uri.fl_str_mv |
https://www.arca.fiocruz.br/handle/icict/19391 |
dc.identifier.issn.pt_BR.fl_str_mv |
0953-7562 |
dc.identifier.doi.none.fl_str_mv |
10.1016/j.mycres.2008.04.014 |
identifier_str_mv |
FORMIGHIERI, E. F. et al. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109 kb in size and contains a stable integrated plasmid. Mycological Research, v. 112, p. 1136–1152, 2008. 0953-7562 10.1016/j.mycres.2008.04.014 |
url |
https://www.arca.fiocruz.br/handle/icict/19391 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Elsevier |
publisher.none.fl_str_mv |
Elsevier |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da FIOCRUZ (ARCA) instname:Fundação Oswaldo Cruz (FIOCRUZ) instacron:FIOCRUZ |
instname_str |
Fundação Oswaldo Cruz (FIOCRUZ) |
instacron_str |
FIOCRUZ |
institution |
FIOCRUZ |
reponame_str |
Repositório Institucional da FIOCRUZ (ARCA) |
collection |
Repositório Institucional da FIOCRUZ (ARCA) |
bitstream.url.fl_str_mv |
https://www.arca.fiocruz.br/bitstream/icict/19391/1/license.txt https://www.arca.fiocruz.br/bitstream/icict/19391/2/Formighieri%20E%20The%20mitochondrial%20genome%20of%20the%20....pdf https://www.arca.fiocruz.br/bitstream/icict/19391/3/Formighieri%20E%20The%20mitochondrial%20genome%20of%20the%20....pdf.txt |
bitstream.checksum.fl_str_mv |
5a560609d32a3863062d77ff32785d58 1d7bfb99c858a3d07acdc7d7365fc026 f814c1db6a5ba5ab6265fd09f9447105 |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ) |
repository.mail.fl_str_mv |
repositorio.arca@fiocruz.br |
_version_ |
1813008994002796544 |