Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus

Detalhes bibliográficos
Autor(a) principal: Silva, Fabio O. Morais
Data de Publicação: 2014
Outros Autores: Rezende, Antonio Mauro, Pimentel, Catarina, Santos, Catia I., Clemente, Carla, Raposo, Ana Varela, Resende, Daniela de Melo, Silva, Sofia M. da, Oliveira, Luciana Marcia de, Matos, Marcia, Costa, Daniela Arruda, Flores, Orfeu, Ruiz, Jeronimo Conceição, Pousada, Claudina Rodrigues
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/9726
Resumo: Universidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, Portugal
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spelling Silva, Fabio O. MoraisRezende, Antonio MauroPimentel, CatarinaSantos, Catia I.Clemente, CarlaRaposo, Ana VarelaResende, Daniela de MeloSilva, Sofia M. daOliveira, Luciana Marcia deMatos, MarciaCosta, Daniela ArrudaFlores, OrfeuRuiz, Jeronimo ConceiçãoPousada, Claudina Rodrigues2015-03-17T17:02:51Z2015-03-17T17:02:51Z2014SILVA, Fabio O. Morais et al. Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus. Microbiologyopen, v. 3, n. 4, p. 513-30, 20142045-8827https://www.arca.fiocruz.br/handle/icict/972610.1002/mbo3.184engWiley Online LibraryGenome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genusinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalFundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo Informatica de Biossistemas. Belo Horizonte, MG, BrasilUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalSTAB VIDA. Caparica, PortugalUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalFundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo Informatica de Biossistemas. Belo Horizonte, MG, BrasilUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalFundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo Informatica de Biossistemas. Belo Horizonte, MG, Brasil/Universidade Federal de Minas Gerais. Departamento de Microbiologia. Belo Horizonte, MG, BrasilSTAB VIDA. Caparica, PortugalFundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo Informatica de Biossistemas. Belo Horizonte, MG, BrasilSTAB VIDA. Caparica, PortugalFundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo Informatica de Biossistemas. Belo Horizonte, MG, BrasilUniversidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, PortugalDesulfovibrio gigas is a model organism of sulfate-reducing bacteria of which energy metabolism and stress response have been extensively studied. The complete genomic context of this organism was however, not yet available. The sequencing of the D. gigas genome provides insights into the integrated network of energy conserving complexes and structures present in this bacterium. Comparison with genomes of other Desulfovibrio spp. reveals the presence of two different CRISPR/Cas systems in D. gigas. Phylogenetic analysis using conserved protein sequences (encoded by rpoB and gyrB) indicates two main groups of Desulfovibrio spp, being D. gigas more closely related to D. vulgaris and D. desulfuricans strains. Gene duplications were found such as those encoding fumarate reductase, formate dehydrogenase, and superoxide dismutase. Complexes not yet described within Desulfovibrio genus were identified: Mnh complex, a v-type ATP-synthase as well as genes encoding the MinCDE system that could be responsible for the larger size of D. gigas when compared to other members of the genus. A low number of hydrogenases and the absence of the codh/acs and pfl genes, both present in D. vulgaris strains, indicate that intermediate cycling mechanisms may contribute substantially less to the energy gain in D. gigas compared to other Desulfovibrio spp. This might be compensated by the presence of other unique genomic arrangements of complexes such as the Rnf and the Hdr/Flox, or by the presence of NAD(P)H related complexes, like the Nuo, NfnAB or Mnh.AnalysisDesulfovibrio gigascomparative genomicsgenomeinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82352https://www.arca.fiocruz.br/bitstream/icict/9726/1/license.txtafbdf7d7a9bcf771a1cc7edf5f618413MD51ORIGINAL2014_156.pdf2014_156.pdfapplication/pdf2070413https://www.arca.fiocruz.br/bitstream/icict/9726/2/2014_156.pdf8beeaec125086732b7d96f7d51f123f3MD52TEXT2014_156.pdf.txt2014_156.pdf.txtExtracted texttext/plain77777https://www.arca.fiocruz.br/bitstream/icict/9726/3/2014_156.pdf.txt9c1b44d342e9d51dd36299cccaf6281eMD53icict/97262019-06-19 10:12:05.366oai:www.arca.fiocruz.br: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ório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352019-06-19T13:12:05Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)false
dc.title.pt_BR.fl_str_mv Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
title Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
spellingShingle Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
Silva, Fabio O. Morais
Analysis
Desulfovibrio gigas
comparative genomics
genome
title_short Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
title_full Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
title_fullStr Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
title_full_unstemmed Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
title_sort Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus
author Silva, Fabio O. Morais
author_facet Silva, Fabio O. Morais
Rezende, Antonio Mauro
Pimentel, Catarina
Santos, Catia I.
Clemente, Carla
Raposo, Ana Varela
Resende, Daniela de Melo
Silva, Sofia M. da
Oliveira, Luciana Marcia de
Matos, Marcia
Costa, Daniela Arruda
Flores, Orfeu
Ruiz, Jeronimo Conceição
Pousada, Claudina Rodrigues
author_role author
author2 Rezende, Antonio Mauro
Pimentel, Catarina
Santos, Catia I.
Clemente, Carla
Raposo, Ana Varela
Resende, Daniela de Melo
Silva, Sofia M. da
Oliveira, Luciana Marcia de
Matos, Marcia
Costa, Daniela Arruda
Flores, Orfeu
Ruiz, Jeronimo Conceição
Pousada, Claudina Rodrigues
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Silva, Fabio O. Morais
Rezende, Antonio Mauro
Pimentel, Catarina
Santos, Catia I.
Clemente, Carla
Raposo, Ana Varela
Resende, Daniela de Melo
Silva, Sofia M. da
Oliveira, Luciana Marcia de
Matos, Marcia
Costa, Daniela Arruda
Flores, Orfeu
Ruiz, Jeronimo Conceição
Pousada, Claudina Rodrigues
dc.subject.en.pt_BR.fl_str_mv Analysis
Desulfovibrio gigas
comparative genomics
genome
topic Analysis
Desulfovibrio gigas
comparative genomics
genome
description Universidade Nova de Lisboa. Instituto de Tecnologia Quimica e Biologica Antonio Xavier. Oeiras, Portugal
publishDate 2014
dc.date.issued.fl_str_mv 2014
dc.date.accessioned.fl_str_mv 2015-03-17T17:02:51Z
dc.date.available.fl_str_mv 2015-03-17T17:02:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv SILVA, Fabio O. Morais et al. Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus. Microbiologyopen, v. 3, n. 4, p. 513-30, 2014
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/9726
dc.identifier.issn.none.fl_str_mv 2045-8827
dc.identifier.doi.none.fl_str_mv 10.1002/mbo3.184
identifier_str_mv SILVA, Fabio O. Morais et al. Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus. Microbiologyopen, v. 3, n. 4, p. 513-30, 2014
2045-8827
10.1002/mbo3.184
url https://www.arca.fiocruz.br/handle/icict/9726
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Wiley Online Library
publisher.none.fl_str_mv Wiley Online Library
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
bitstream.url.fl_str_mv https://www.arca.fiocruz.br/bitstream/icict/9726/1/license.txt
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