Streptococcal taxonomy based on genome sequence analyses

Detalhes bibliográficos
Autor(a) principal: Thompson, Cristiane C.
Data de Publicação: 2013
Outros Autores: Emmel, Vanessa E., Fonseca, Erica L., Marin, Michel A., Vicente, Ana Carolina P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/12553
Resumo: Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.
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spelling Thompson, Cristiane C.Emmel, Vanessa E.Fonseca, Erica L.Marin, Michel A.Vicente, Ana Carolina P.2016-01-19T12:08:40Z2016-01-19T12:08:40Z2013THOMPSON, Cristiane C.; et al. Streptococcal taxonomy based on genome sequence analyses. F1000Research, v.2, n.67, 2013.2046-140https://www.arca.fiocruz.br/handle/icict/1255310.12688/f1000research.2-67.v12046-1402engF1000ResearchInfecções EstreptocócicasGenomaStreptococcal taxonomyGenome sequence analysesStreptococcal taxonomy based on genome sequence analysesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.The identification of the clinically relevant viridans streptococci group, at species level, is still problematic. The aim of this study was to extract taxonomic information from the complete genome sequences of 67 streptococci, comprising 19 species, by means of genomic analyses, multilocus sequence analysis (MLSA), average amino acid identity (AAI), genomic signatures, genome-to-genome distances (GGD) and codon usage bias. We then attempted to determine the usefulness of these genomic tools for species identification in streptococci. Our results showed that MLSA, AAI and GGD analyses are robust markers to identify streptococci at the species level, for instance, S. pneumoniae, S. mitis, and S. oralis. A Streptococcus species can be defined as a group of strains that share ≥ 95% DNA similarity in MLSA and AAI, and > 70% DNA identity in GGD. 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dc.title.pt_BR.fl_str_mv Streptococcal taxonomy based on genome sequence analyses
title Streptococcal taxonomy based on genome sequence analyses
spellingShingle Streptococcal taxonomy based on genome sequence analyses
Thompson, Cristiane C.
Infecções Estreptocócicas
Genoma
Streptococcal taxonomy
Genome sequence analyses
title_short Streptococcal taxonomy based on genome sequence analyses
title_full Streptococcal taxonomy based on genome sequence analyses
title_fullStr Streptococcal taxonomy based on genome sequence analyses
title_full_unstemmed Streptococcal taxonomy based on genome sequence analyses
title_sort Streptococcal taxonomy based on genome sequence analyses
author Thompson, Cristiane C.
author_facet Thompson, Cristiane C.
Emmel, Vanessa E.
Fonseca, Erica L.
Marin, Michel A.
Vicente, Ana Carolina P.
author_role author
author2 Emmel, Vanessa E.
Fonseca, Erica L.
Marin, Michel A.
Vicente, Ana Carolina P.
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Thompson, Cristiane C.
Emmel, Vanessa E.
Fonseca, Erica L.
Marin, Michel A.
Vicente, Ana Carolina P.
dc.subject.other.pt_BR.fl_str_mv Infecções Estreptocócicas
Genoma
topic Infecções Estreptocócicas
Genoma
Streptococcal taxonomy
Genome sequence analyses
dc.subject.en.pt_BR.fl_str_mv Streptococcal taxonomy
Genome sequence analyses
description Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microorganismos. Rio de Janeiro, RJ, Brasil.
publishDate 2013
dc.date.issued.fl_str_mv 2013
dc.date.accessioned.fl_str_mv 2016-01-19T12:08:40Z
dc.date.available.fl_str_mv 2016-01-19T12:08:40Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv THOMPSON, Cristiane C.; et al. Streptococcal taxonomy based on genome sequence analyses. F1000Research, v.2, n.67, 2013.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/12553
dc.identifier.issn.none.fl_str_mv 2046-140
dc.identifier.doi.none.fl_str_mv 10.12688/f1000research.2-67.v1
dc.identifier.eissn.none.fl_str_mv 2046-1402
identifier_str_mv THOMPSON, Cristiane C.; et al. Streptococcal taxonomy based on genome sequence analyses. F1000Research, v.2, n.67, 2013.
2046-140
10.12688/f1000research.2-67.v1
2046-1402
url https://www.arca.fiocruz.br/handle/icict/12553
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv F1000Research
publisher.none.fl_str_mv F1000Research
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
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