Genomic taxonomy of Vibrios

Detalhes bibliográficos
Autor(a) principal: Thompson, Cristiane C.
Data de Publicação: 2009
Outros Autores: Vicente, Ana Carolina P., Souza, Rangel C., Vasconcelos, Ana Tereza R., Vesth, Tammi, Alves, Nelson, Ussery, David W., Iida, Tetsuya, Thompson, Fabiano L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/30923
Resumo: Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil.
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spelling Thompson, Cristiane C.Vicente, Ana Carolina P.Souza, Rangel C.Vasconcelos, Ana Tereza R.Vesth, TammiAlves, NelsonUssery, David W.Iida, TetsuyaThompson, Fabiano L.2019-01-08T14:51:38Z2019-01-08T14:51:38Z2009THOMPSON, Cristiane C. Genomic taxonomy of virbios. BMC Evolutionary Biology, v.9, n.258, 16p, Oct. 2009.1471-2148https://www.arca.fiocruz.br/handle/icict/3092310.1186/1471-2148-9-258engBioMed CentralTaxonomia genômicaVibriosAnálise de Sequência MultilocusIdentidade Média de AminoácidosGenomic taxonomyvibriosMultilocus Sequence AnalysisAverage Amino Acid IdentityGenome BLAST atlasesGenomic taxonomy of Vibriosinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil.Laboratório Nacional de Computação Científica. Departamento de Matemática Aplicada e Computacional. Laboratório de Bioinformática. Petrópolis, RJ, Brasil.Laboratório Nacional de Computação Científica. Departamento de Matemática Aplicada e Computacional. Laboratório de Bioinformática. Petrópolis, RJ, Brasil.The Technical University of Denmark. Center for Biological Sequence Analysis. Department of Biotechnology. Lyngby, Denmark.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.The Technical University of Denmark. Center for Biological Sequence Analysis. Department of Biotechnology. Lyngby, Denmark.Osaka University. Research Institute for Microbial Diseases. International Research Center for Infectious Diseases. Laboratory of Genomic Research on Pathogenic Bacteria. Osaka, Japan.Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil.Vibrio taxonomy has been based on a polyphasic approach. In this study, we retrieve useful taxonomic information (i.e. data that can be used to distinguish different taxonomic levels, such as species and genera) from 32 genome sequences of different vibrio species. We use a variety of tools to explore the taxonomic relationship between the sequenced genomes, including Multilocus Sequence Analysis (MLSA), supertrees, Average Amino Acid Identity (AAI), genomic signatures, and Genome BLAST atlases. Our aim is to analyse the usefulness of these tools for species identification in vibrios.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/30923/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALcristianethompson_anavicente_etal_IOC-2009.pdfcristianethompson_anavicente_etal_IOC-2009.pdfapplication/pdf2836016https://www.arca.fiocruz.br/bitstream/icict/30923/2/cristianethompson_anavicente_etal_IOC-2009.pdf89fff9da6d8ee15fafdd77d8e1b9549aMD52TEXTcristianethompson_anavicente_etal_IOC-2009.pdf.txtcristianethompson_anavicente_etal_IOC-2009.pdf.txtExtracted texttext/plain75209https://www.arca.fiocruz.br/bitstream/icict/30923/3/cristianethompson_anavicente_etal_IOC-2009.pdf.txtd6cb6a40ebf7f5ea90f6bc5180fac819MD53icict/309232019-01-09 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dc.title.pt_BR.fl_str_mv Genomic taxonomy of Vibrios
title Genomic taxonomy of Vibrios
spellingShingle Genomic taxonomy of Vibrios
Thompson, Cristiane C.
Taxonomia genômica
Vibrios
Análise de Sequência Multilocus
Identidade Média de Aminoácidos
Genomic taxonomy
vibrios
Multilocus Sequence Analysis
Average Amino Acid Identity
Genome BLAST atlases
title_short Genomic taxonomy of Vibrios
title_full Genomic taxonomy of Vibrios
title_fullStr Genomic taxonomy of Vibrios
title_full_unstemmed Genomic taxonomy of Vibrios
title_sort Genomic taxonomy of Vibrios
author Thompson, Cristiane C.
author_facet Thompson, Cristiane C.
Vicente, Ana Carolina P.
Souza, Rangel C.
Vasconcelos, Ana Tereza R.
Vesth, Tammi
Alves, Nelson
Ussery, David W.
Iida, Tetsuya
Thompson, Fabiano L.
author_role author
author2 Vicente, Ana Carolina P.
Souza, Rangel C.
Vasconcelos, Ana Tereza R.
Vesth, Tammi
Alves, Nelson
Ussery, David W.
Iida, Tetsuya
Thompson, Fabiano L.
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Thompson, Cristiane C.
Vicente, Ana Carolina P.
Souza, Rangel C.
Vasconcelos, Ana Tereza R.
Vesth, Tammi
Alves, Nelson
Ussery, David W.
Iida, Tetsuya
Thompson, Fabiano L.
dc.subject.other.pt_BR.fl_str_mv Taxonomia genômica
Vibrios
Análise de Sequência Multilocus
Identidade Média de Aminoácidos
topic Taxonomia genômica
Vibrios
Análise de Sequência Multilocus
Identidade Média de Aminoácidos
Genomic taxonomy
vibrios
Multilocus Sequence Analysis
Average Amino Acid Identity
Genome BLAST atlases
dc.subject.en.pt_BR.fl_str_mv Genomic taxonomy
vibrios
Multilocus Sequence Analysis
Average Amino Acid Identity
Genome BLAST atlases
description Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil.
publishDate 2009
dc.date.issued.fl_str_mv 2009
dc.date.accessioned.fl_str_mv 2019-01-08T14:51:38Z
dc.date.available.fl_str_mv 2019-01-08T14:51:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv THOMPSON, Cristiane C. Genomic taxonomy of virbios. BMC Evolutionary Biology, v.9, n.258, 16p, Oct. 2009.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/30923
dc.identifier.issn.pt_BR.fl_str_mv 1471-2148
dc.identifier.doi.none.fl_str_mv 10.1186/1471-2148-9-258
identifier_str_mv THOMPSON, Cristiane C. Genomic taxonomy of virbios. BMC Evolutionary Biology, v.9, n.258, 16p, Oct. 2009.
1471-2148
10.1186/1471-2148-9-258
url https://www.arca.fiocruz.br/handle/icict/30923
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
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