Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018
| Autor(a) principal: | |
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| Data de Publicação: | 2020 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/45890 |
Resumo: | Department of Zoology, University of Oxford. Oxford, United Kingdom / Department of Pathobiology and Population Sciences, Royal Veterinary College. Hawkshead, United Kingdom. |
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Hill, Sara C.Souza, Renato deThézé, JulienClaro, IngraAguiar, Renato S.Abade, LeandroSantos, Fabiana C. P.Cunha, Mariana S.Nogueira, Juliana S.Salles, Flavia C. S.Rocco, Iray M.Maeda, Adriana Y.Vasami, Fernanda G. S.Plessis, Louis duSilveira, Paola P.Jesus, Jaqueline G. deQuick, JoshuaFernandes, Natália C. C. AGuerra, Juliana M.Réssio, Rodrigo A.Giovanetti, MartaAlcantara, Luiz C. J.Cirqueira, Cinthya S.Dıáz-Delgado, JosuéMacedo, Fernando L. L.Timenetsky, Maria do Carmo S. T.Paula, Regiane deSpinola, RobertaDeus, Juliana Telles deMucci, Luís F.Tubaki, Rosa MariaMenezes, Regiane M. T. deRamos, Patrícia L.Abreu, Andre Luiz deCruz, Laura N.Loman, NickDellicou, SimonPybu, Olivier G.Sabino, Ester C.Faria, Nuno R.2021-01-31T19:34:11Z2021-01-31T19:34:11Z2020HILL, Sarah C. et al. Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018. Plos Pathogens, v. 16, n. 8, e1008699, p. 1-18, Aug. 2020.2076-0817https://www.arca.fiocruz.br/handle/icict/4589010.1371/journal.ppat.1008699engPublic Library of ScienceEpizooticVírus da febre amarelaEpizoóticoSão PauloBrasilGenomic SurveillanceYellow Fever VirusEpizooticSão PauloBrazilGenomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleDepartment of Zoology, University of Oxford. Oxford, United Kingdom / Department of Pathobiology and Population Sciences, Royal Veterinary College. Hawkshead, United Kingdom.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Department of Zoology, University of Oxford. Oxford, United Kingdom / Université Clermont Auvergne, INRAE, VetAgro Sup, UMR EPIA., Saint-Genès- Champanelle, France.Universidade de São Paulo. Faculdade de Medicina. Instituto de Medicina Tropical. Departamento de Moléstias Infecciosas e Parasitárias. São Paulo, SP, Brasil.Laboratório de Virologia Molecular. Departamento de Genética, Instituto de Biologia, Rio de Janeiro, RJ, Brasil.Department of Zoology, University of Oxford. Oxford, United Kingdom.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Universidade de São Paulo. Faculdade de Medicina. Instituto de Medicina Tropical. Departamento de Moléstias Infecciosas e Parasitárias. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Department of Zoology, University of Oxford. Oxford, United Kingdom.Laboratório de Virologia Molecular, Departamento de Genética. Instituto de Biologia, Rio de Janeiro,RJ, Brasil.Laboratório de Virologia Molecular, Departamento de Genética. Instituto de Biologia, Rio de Janeiro,RJ, Brasil.Institute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom,Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Centro de Vigilância Epidemiológica "Prof. Alexandre Vranjac", São Paulo, SP, Brasil,Centro de Vigilância Epidemiológica "Prof. Alexandre Vranjac", São Paulo, SP, Brasil,Superintendência do Controle de Endemias. São Paulo, SP, Brasil.Superintendência do Controle de Endemias. São Paulo, SP, Brasil.Superintendência do Controle de Endemias. São Paulo, SP, Brasil.Superintendência do Controle de Endemias. São Paulo, SP, Brasil.Fundação Parque Zoológico de São Paulo. São Paulo, SP, Brasil.Ministério da Saúde. Secretaria de Vigilância em Saúde (SVS/MS). Brasília, DF, Brasil.Instituto Adolfo Lutz. São Paulo, SP, Brasil.Institute of Microbiology and Infection. University of Birmingham. Birmingham, United Kingdom.Epidemiology Lab (SpELL), Universite´ Libre de Bruxelles / Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.Department of Zoology, University of Oxford. Oxford, United Kingdom / Department of Pathobiology and Population Sciences, Royal Veterinary College, Hawkshead, United Kingdom.Universidade de São Paulo. Faculdade de Medicina. Instituto de Medicina Tropical. Departamento de Moléstias Infecciosas e Parasitárias. São Paulo, SP, Brasil.Department of Zoology, University of Oxford. Oxford, United Kingdom.São Paulo, a densely inhabited state in southeast Brazil that contains the fourth most populated city in the world, recently experienced its largest yellow fever virus (YFV) outbreak in decades. YFV does not normally circulate extensively in São Paulo, so most people were unvaccinated when the outbreak began. Surveillance in non-human primates (NHPs) is important for determining the magnitude and geographic extent of an epizootic, thereby helping to evaluate the risk of YFV spillover to humans. Data from infected NHPs can give more accurate insights into YFV spread than when using data from human cases alone. To contextualise human cases, identify epizootic foci and uncover the rate and direction of YFV spread in São Paulo, we generated and analysed virus genomic data and epizootic case data from NHPs in São Paulo. We report the occurrence of three spatiotemporally distinct phases of the outbreak in São Paulo prior to February 2018. We generated 51 new virus genomes from YFV positive cases identified in 23 different municipalities in São Paulo, mostly sampled from NHPs between October 2016 and January 2018. Although we observe substantial heterogeneity in lineage dispersal velocities between phylogenetic branches, continuous phylogeographic analyses of generated YFV genomes suggest that YFV lineages spread in São Paulo at a mean rate of approximately 1km per day during all phases of the outbreak. Viral lineages from the first epizootic phase in northern São Paulo subsequently dispersed towards the south of the state to cause the second and third epizootic phases there. This alters our understanding of how YFV was introduced into the densely populated south of São Paulo state. Our results shed light on the sylvatic transmission of YFV in highly fragmented forested regions in São Paulo state and highlight the importance of continued surveillance of zoonotic pathogens in sentinel species.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/45890/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALMartaGiovanetti_LuizJALcantara_etal_IOC_2020.pdfMartaGiovanetti_LuizJALcantara_etal_IOC_2020.pdfapplication/pdf2401749https://www.arca.fiocruz.br/bitstream/icict/45890/2/MartaGiovanetti_LuizJALcantara_etal_IOC_2020.pdfd60ee7fd12fc80617985ae185dbdffe0MD52TEXTMartaGiovanetti_LuizJALcantara_etal_IOC_2020.pdf.txtMartaGiovanetti_LuizJALcantara_etal_IOC_2020.pdf.txtExtracted 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| dc.title.pt_BR.fl_str_mv |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| title |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| spellingShingle |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 Hill, Sara C. Epizootic Vírus da febre amarela Epizoótico São Paulo Brasil Genomic Surveillance Yellow Fever Virus Epizootic São Paulo Brazil |
| title_short |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| title_full |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| title_fullStr |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| title_full_unstemmed |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| title_sort |
Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018 |
| author |
Hill, Sara C. |
| author_facet |
Hill, Sara C. Souza, Renato de Thézé, Julien Claro, Ingra Aguiar, Renato S. Abade, Leandro Santos, Fabiana C. P. Cunha, Mariana S. Nogueira, Juliana S. Salles, Flavia C. S. Rocco, Iray M. Maeda, Adriana Y. Vasami, Fernanda G. S. Plessis, Louis du Silveira, Paola P. Jesus, Jaqueline G. de Quick, Joshua Fernandes, Natália C. C. A Guerra, Juliana M. Réssio, Rodrigo A. Giovanetti, Marta Alcantara, Luiz C. J. Cirqueira, Cinthya S. Dıáz-Delgado, Josué Macedo, Fernando L. L. Timenetsky, Maria do Carmo S. T. Paula, Regiane de Spinola, Roberta Deus, Juliana Telles de Mucci, Luís F. Tubaki, Rosa Maria Menezes, Regiane M. T. de Ramos, Patrícia L. Abreu, Andre Luiz de Cruz, Laura N. Loman, Nick Dellicou, Simon Pybu, Olivier G. Sabino, Ester C. Faria, Nuno R. |
| author_role |
author |
| author2 |
Souza, Renato de Thézé, Julien Claro, Ingra Aguiar, Renato S. Abade, Leandro Santos, Fabiana C. P. Cunha, Mariana S. Nogueira, Juliana S. Salles, Flavia C. S. Rocco, Iray M. Maeda, Adriana Y. Vasami, Fernanda G. S. Plessis, Louis du Silveira, Paola P. Jesus, Jaqueline G. de Quick, Joshua Fernandes, Natália C. C. A Guerra, Juliana M. Réssio, Rodrigo A. Giovanetti, Marta Alcantara, Luiz C. J. Cirqueira, Cinthya S. Dıáz-Delgado, Josué Macedo, Fernando L. L. Timenetsky, Maria do Carmo S. T. Paula, Regiane de Spinola, Roberta Deus, Juliana Telles de Mucci, Luís F. Tubaki, Rosa Maria Menezes, Regiane M. T. de Ramos, Patrícia L. Abreu, Andre Luiz de Cruz, Laura N. Loman, Nick Dellicou, Simon Pybu, Olivier G. Sabino, Ester C. Faria, Nuno R. |
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author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Hill, Sara C. Souza, Renato de Thézé, Julien Claro, Ingra Aguiar, Renato S. Abade, Leandro Santos, Fabiana C. P. Cunha, Mariana S. Nogueira, Juliana S. Salles, Flavia C. S. Rocco, Iray M. Maeda, Adriana Y. Vasami, Fernanda G. S. Plessis, Louis du Silveira, Paola P. Jesus, Jaqueline G. de Quick, Joshua Fernandes, Natália C. C. A Guerra, Juliana M. Réssio, Rodrigo A. Giovanetti, Marta Alcantara, Luiz C. J. Cirqueira, Cinthya S. Dıáz-Delgado, Josué Macedo, Fernando L. L. Timenetsky, Maria do Carmo S. T. Paula, Regiane de Spinola, Roberta Deus, Juliana Telles de Mucci, Luís F. Tubaki, Rosa Maria Menezes, Regiane M. T. de Ramos, Patrícia L. Abreu, Andre Luiz de Cruz, Laura N. Loman, Nick Dellicou, Simon Pybu, Olivier G. Sabino, Ester C. Faria, Nuno R. |
| dc.subject.other.pt_BR.fl_str_mv |
Epizootic Vírus da febre amarela Epizoótico São Paulo Brasil |
| topic |
Epizootic Vírus da febre amarela Epizoótico São Paulo Brasil Genomic Surveillance Yellow Fever Virus Epizootic São Paulo Brazil |
| dc.subject.en.pt_BR.fl_str_mv |
Genomic Surveillance Yellow Fever Virus Epizootic São Paulo Brazil |
| description |
Department of Zoology, University of Oxford. Oxford, United Kingdom / Department of Pathobiology and Population Sciences, Royal Veterinary College. Hawkshead, United Kingdom. |
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2020 |
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2020 |
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2021-01-31T19:34:11Z |
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2021-01-31T19:34:11Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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| dc.identifier.citation.fl_str_mv |
HILL, Sarah C. et al. Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018. Plos Pathogens, v. 16, n. 8, e1008699, p. 1-18, Aug. 2020. |
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https://www.arca.fiocruz.br/handle/icict/45890 |
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2076-0817 |
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10.1371/journal.ppat.1008699 |
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HILL, Sarah C. et al. Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018. Plos Pathogens, v. 16, n. 8, e1008699, p. 1-18, Aug. 2020. 2076-0817 10.1371/journal.ppat.1008699 |
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Public Library of Science |
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