Back to the Future of Soil Metagenomics

Nesme, Josephet; Achouak, W.; Agathos, S. N.; Bailey, M.; Baldrian, P.; Brunel, D.; Frostegård, Å.; Heulin, T.; Jansson, J. K.; Jurkevitch, E.; Kruus, K. L.; Kowalchuk, G. A.; Lagares, A.; Lappin-Scott, H. M.; Lemanceau, P.; Le Paslier, D.; Mandic-Mulec, I.; Murrell, J. C.; Myrold, D. D.; Nalin, R.; Nannipieri, P.; Neufeld, J. D.; O'Gara, F.; Parnell, J. J.; Pühler, A.; Pylro, Victor Satler; Ramos, J. L.; Roesch, Luiz Fernando Wurdig; Schloter, M.; Schleper, C.; Sczyrba, A.; Sessitsch, A.; Sjöling, S.; Sørensen, J.; Sørensen, S. J.; Tebbe, C. C.; Topp, E.; Tsiamis, G.; van Elsas, J. D.; van Keulen, G.; Widmer, F.; Wagner, M.; Zhang, T.; Zhang, X.; Zhao, L.; Zhu, Y. G.; Vogel, T. M.; Simonet, P.

Back to the Future of Soil Metagenomics

Detalhes bibliográficos
Autor(a) principal:	Nesme, Josephet
Data de Publicação:	2016
Outros Autores:	Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegård, Å., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R., Nannipieri, P., Neufeld, J. D., O'Gara, F., Parnell, J. J., Pühler, A., Pylro, Victor Satler, Ramos, J. L., Roesch, Luiz Fernando Wurdig, Schloter, M., Schleper, C., Sczyrba, A., Sessitsch, A., Sjöling, S., Sørensen, J., Sørensen, S. J., Tebbe, C. C., Topp, E., Tsiamis, G., van Elsas, J. D., van Keulen, G., Widmer, F., Wagner, M., Zhang, T., Zhang, X., Zhao, L., Zhu, Y. G., Vogel, T. M., Simonet, P.
Tipo de documento:	Artigo
Idioma:	eng
Título da fonte:	Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo:	https://www.arca.fiocruz.br/handle/icict/15011
Resumo:	Université de LyonEcully. Ecole Centrale de Lyon. Institut National de la Recherche Agronomique. Centre National de la Recherche Scientifique Laboratoire Ampère. Environmental Microbial Genomics Group. France/Research Unit for Environmental Genomics. Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt Neuherberg, Germany.

Metadados do item

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network_acronym_str	CRUZ
network_name_str	Repositório Institucional da FIOCRUZ (ARCA)
repository_id_str	2135
spelling	Nesme, JosephetAchouak, W.Agathos, S. N.Bailey, M.Baldrian, P.Brunel, D.Frostegård, Å.Heulin, T.Jansson, J. K.Jurkevitch, E.Kruus, K. L.Kowalchuk, G. A.Lagares, A.Lappin-Scott, H. M.Lemanceau, P.Le Paslier, D.Mandic-Mulec, I.Murrell, J. C.Myrold, D. D.Nalin, R.Nannipieri, P.Neufeld, J. D.O'Gara, F.Parnell, J. J.Pühler, A.Pylro, Victor SatlerRamos, J. L.Roesch, Luiz Fernando WurdigSchloter, M.Schleper, C.Sczyrba, A.Sessitsch, A.Sjöling, S.Sørensen, J.Sørensen, S. J.Tebbe, C. C.Topp, E.Tsiamis, G.van Elsas, J. D.van Keulen, G.Widmer, F.Wagner, M.Zhang, T.Zhang, X.Zhao, L.Zhu, Y. G.Vogel, T. M.Simonet, P.2016-07-20T18:21:38Z2016-07-20T18:21:38Z2016NESME, Josephet et al. Back to the Future of Soil Metagenomics. Front Microbiol., v. 7, art. 73, p. 1-5, Feb. 20161664-302Xhttps://www.arca.fiocruz.br/handle/icict/1501110.3389/fmicb.2016.00073engFrontiers Research FoundationBack to the Future of Soil Metagenomicsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversité de LyonEcully. Ecole Centrale de Lyon. Institut National de la Recherche Agronomique. Centre National de la Recherche Scientifique Laboratoire Ampère. Environmental Microbial Genomics Group. France/Research Unit for Environmental Genomics. Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt Neuherberg, Germany.Aix-Marseille Université. CEA. Centre National de la Recherche Scientifique. Laboratoire d'Écologie Microbienne de la Rhizosphère et Environnements Extrêmes. Biologie Végétale et de Microbiologie Environnementales. Saint-Paul-lez-Durance, France.Catholic University of LouvainLouvain-la-Neuve. Earth and Life Institute. Belgium/ Yachay Tech UniversityUrcuquí. School of Life Sciences and Biotechnology. Ecuador.Natural Environment Research Council. Centre for Ecology and Hydrology. Oxford. UK.Czech Academy of Sciences Praha. Institute of Microbiology. Laboratory of Environmental Microbiology. Czech Republic.Centre National de Génotypage Evry. Etude du Polymorphisme des Génomes Végétaux. Institut National de la Recherche Agronomique. Institut de Génomique. France.Norwegian University of Life Sciences Aas. Department of Chemistry, Biotechnology and Food Science. NMBU Nitrogen Group. Norway.Aix-Marseille Université. CEA. Centre National de la Recherche Scientifique. Laboratoire d'Écologie Microbienne de la Rhizosphère et Environnements Extrêmes., Biologie Végétale et de Microbiologie Environnementales Saint-Paul-lez-Durance, France.Pacific Northwest National Laboratory Richland. Earth and Biological Sciences Directorate WA, USA.Hebrew University of Jerusalem Rehovot.Faculty of Agriculture. Department of Plant Pathology and Microbiology. Food and Environment. Otto Warburg-Minerva Center in Agricultural Biotechnology. Israel.Technical Research Centre of Finland Espoo. Enzymology of Renewable Biomass. VTT. FinlandEcology and Biodiversity, Institute of Environmental Biology, Utrecht University Utrecht, Netherlands.Universidad Nacional de La Plata La Plata. Centro Científico Tecnológico-Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Biotecnología y Biología Molecular. Facultad de Ciencias Exactas. Departamento de Ciencia Biológicas. Argentina.Swansea University Swansea. Department of Biosciences. UK.Université de Bourgogne Dijon. Institut National de la Recherche Agronomique, Agroécologie. France.Université d'Evry Val d'Essonne Evry. Centre National de la Recherche Scientifiue. CEA/Direction des sciences du vivant/Institut de Génomique. Genoscope. France.Biotechnical Faculty- University of Ljubljana Ljubljana. Department of Food Science and Technology. Slovenia.University of East Anglia Norwich. School of Environmental Sciences. UK.Oregon State University. Department of Crop and Soil Science. Corvallis, OR, USA.NALINOV Dremil Lafage. France.Department of Agrifood and Environmental Science, University of Florence Florence, Italy.University of Waterloo. Department of Biology. Waterloo, ON, Canada.National University of IrelandCork. School of Microbiology. BIOMERIT Research Centre. Ireland/ Curtin University. School of Biomedical Science. Perth. WA, AustraliaNational Ecological Observatory Network Boulder. CO, USA.Bielefeld University. Institute for Genome Research and Systems Biology, Genome Research of Industrial Microorganisms. Center for Biotechnology. Bielefeld, Germany.Fundação Oswaldo Cruz. Centro de Pesquisa Rene Rachou. Grupo de Biologia Computacional e Genonica. Belo Horizonte, MG, Brasil.Consejo Superior de Investigaciones Científicas. Estación Experimental del Zaidín. Department of Environmental Protection. Granada, Spain.Universidade Federal do Pampa. São Gabriel, RS, Brasil.Research Unit for Environmental Genomics. Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Neuherberg, Germany.University of Vienna. Department of Ecogenomics and Systems Biology. Archaea Biology and Ecogenomics Division. Vienna, Austria.Bielefeld University. Center for Biotechnology and Faculty of Technology, Computational Metagenomics. Bielefeld, Germany.AIT Austrian Institute of Technology GmbH. Health and Environment Department, Bioresources. Tulln, Austria.Södertörn University. School of Natural Sciences and Environmental Studies. Huddinge, Sweden.University of Copenhagen. Department of Plant and Environmental Microbiology. Section of Genetics and Microbiology. Frederiksberg, Denmark.University of Copenhagen. Section of Microbiology, Department of Biology. Copenhagen, Denmark.Thünen-Institute of Biodiversity Braunschweig. Germany.University of Western Ontario. Agriculture and Agri-Food Canada. Department of Biology. London, ON, Canada.University of Patras. Department of Environmental and Natural Resources Management. Agrinio, Greece.University of Groningen. Groningen Institute for Evolutionary Life Sciences. Department of Microbial Ecology. Groningen, Netherlands.Medical School. Institute of Life Science. Swansea University. Swansea, UK.Agroscope Zürich.Institute for Sustainability Sciences. Molecular Ecology. Switzerland.University of Vienna Department of Microbiology and Ecosystem Science. Division of Microbial Ecology.Vienna, Austria.University of Hong Kong. Department of Civil Engineering. Environmental Biotechnology Laboratory. Hong Kong, ChinaShanghai Jiao Tong University. School of Life Sciences and Biotechnology. State Key Laboratory of Microbial Metabolism. Group of Microbial Ecology and Ecogenomics. Shanghai, China.Shanghai Jiao Tong University. School of Life Sciences and Biotechnology. State Key Laboratory of Microbial Metabolism. Group of Microbial Ecology and Ecogenomics. Shanghai, China.Chinese Academy of Sciences. Institute of Urban Environment. Xiamen, China.Centre National de la Recherche . Laboratoire Ampère. Environmental Microbial Genomics. Université de Lyon. Institut National de la Recherche Agronomique. Group Ecole Centrale de Lyon. Ecully, France.Medical School. Institute of Life Science. Swansea University. Swansea, UK.Direct extraction and characterization of microbial community DNA through PCR amplicon surveys and metagenomics has revolutionized the study of environmental microbiology and microbial ecology. In particular, metagenomic analysis of nucleic acids provides direct access to the genomes of the “uncultivated majority.” Accelerated by advances in sequencing technology, microbiologists have discovered more novel phyla, classes, genera, and genes from microorganisms in the first decade and a half of the twenty-first century than since these “many very little living animalcules” were first discovered by van Leeuwenhoek (Table 1). The unsurpassed diversity of soils promises continued exploration of a range of industrial, agricultural, and environmental functions. The ability to explore soil microbial communities with increasing capacity offers the highest promise for answering many outstanding who, what, where, when, why, and with whom questions such as: Which microorganisms are linked to which soil habitats? How do microbial abundances change with changing edaphic conditions? How do microbial assemblages interact and influence one another synergistically or antagonistically? What is the full extent of soil microbial diversity, both functionally and phylogenetically? What are the dynamics of microbial communities in space and time? How sensitive are microbial communities to a changing climate? What is the role of horizontal gene transfer in the stability of microbial communities? Do highly diverse microbial communities confer resistance and resilience in soils?MetagenomicMicrobial EcologySoil EcologySoil MicrobiologyTerrestrial Microbiologyinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/15011/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALNesme, Josephet _ Back_CPqRR_2016.pdfNesme, Josephet _ Back_CPqRR_2016.pdfapplication/pdf293083https://www.arca.fiocruz.br/bitstream/icict/15011/2/Nesme%2c%20Josephet%20_%20Back_CPqRR_2016.pdfbe4a55b1c080f84bc9ac1257f47600feMD52TEXTNesme, Josephet _ Back_CPqRR_2016.pdf.txtNesme, Josephet _ Back_CPqRR_2016.pdf.txtExtracted texttext/plain32871https://www.arca.fiocruz.br/bitstream/icict/15011/3/Nesme%2c%20Josephet%20_%20Back_CPqRR_2016.pdf.txtf764ee96d837763f712240110f54b5f8MD53icict/150112019-06-19 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dc.title.pt_BR.fl_str_mv	Back to the Future of Soil Metagenomics
title	Back to the Future of Soil Metagenomics
spellingShingle	Back to the Future of Soil Metagenomics Nesme, Josephet Metagenomic Microbial Ecology Soil Ecology Soil Microbiology Terrestrial Microbiology
title_short	Back to the Future of Soil Metagenomics
title_full	Back to the Future of Soil Metagenomics
title_fullStr	Back to the Future of Soil Metagenomics
title_full_unstemmed	Back to the Future of Soil Metagenomics
title_sort	Back to the Future of Soil Metagenomics
author	Nesme, Josephet
author_facet	Nesme, Josephet Achouak, W. Agathos, S. N. Bailey, M. Baldrian, P. Brunel, D. Frostegård, Å. Heulin, T. Jansson, J. K. Jurkevitch, E. Kruus, K. L. Kowalchuk, G. A. Lagares, A. Lappin-Scott, H. M. Lemanceau, P. Le Paslier, D. Mandic-Mulec, I. Murrell, J. C. Myrold, D. D. Nalin, R. Nannipieri, P. Neufeld, J. D. O'Gara, F. Parnell, J. J. Pühler, A. Pylro, Victor Satler Ramos, J. L. Roesch, Luiz Fernando Wurdig Schloter, M. Schleper, C. Sczyrba, A. Sessitsch, A. Sjöling, S. Sørensen, J. Sørensen, S. J. Tebbe, C. C. Topp, E. Tsiamis, G. van Elsas, J. D. van Keulen, G. Widmer, F. Wagner, M. Zhang, T. Zhang, X. Zhao, L. Zhu, Y. G. Vogel, T. M. Simonet, P.
author_role	author
author2	Achouak, W. Agathos, S. N. Bailey, M. Baldrian, P. Brunel, D. Frostegård, Å. Heulin, T. Jansson, J. K. Jurkevitch, E. Kruus, K. L. Kowalchuk, G. A. Lagares, A. Lappin-Scott, H. M. Lemanceau, P. Le Paslier, D. Mandic-Mulec, I. Murrell, J. C. Myrold, D. D. Nalin, R. Nannipieri, P. Neufeld, J. D. O'Gara, F. Parnell, J. J. Pühler, A. Pylro, Victor Satler Ramos, J. L. Roesch, Luiz Fernando Wurdig Schloter, M. Schleper, C. Sczyrba, A. Sessitsch, A. Sjöling, S. Sørensen, J. Sørensen, S. J. Tebbe, C. C. Topp, E. Tsiamis, G. van Elsas, J. D. van Keulen, G. Widmer, F. Wagner, M. Zhang, T. Zhang, X. Zhao, L. Zhu, Y. G. Vogel, T. M. Simonet, P.
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.contributor.author.fl_str_mv	Nesme, Josephet Achouak, W. Agathos, S. N. Bailey, M. Baldrian, P. Brunel, D. Frostegård, Å. Heulin, T. Jansson, J. K. Jurkevitch, E. Kruus, K. L. Kowalchuk, G. A. Lagares, A. Lappin-Scott, H. M. Lemanceau, P. Le Paslier, D. Mandic-Mulec, I. Murrell, J. C. Myrold, D. D. Nalin, R. Nannipieri, P. Neufeld, J. D. O'Gara, F. Parnell, J. J. Pühler, A. Pylro, Victor Satler Ramos, J. L. Roesch, Luiz Fernando Wurdig Schloter, M. Schleper, C. Sczyrba, A. Sessitsch, A. Sjöling, S. Sørensen, J. Sørensen, S. J. Tebbe, C. C. Topp, E. Tsiamis, G. van Elsas, J. D. van Keulen, G. Widmer, F. Wagner, M. Zhang, T. Zhang, X. Zhao, L. Zhu, Y. G. Vogel, T. M. Simonet, P.
dc.subject.en.pt_BR.fl_str_mv	Metagenomic Microbial Ecology Soil Ecology Soil Microbiology Terrestrial Microbiology
topic	Metagenomic Microbial Ecology Soil Ecology Soil Microbiology Terrestrial Microbiology
description	Université de LyonEcully. Ecole Centrale de Lyon. Institut National de la Recherche Agronomique. Centre National de la Recherche Scientifique Laboratoire Ampère. Environmental Microbial Genomics Group. France/Research Unit for Environmental Genomics. Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt Neuherberg, Germany.
publishDate	2016
dc.date.accessioned.fl_str_mv	2016-07-20T18:21:38Z
dc.date.available.fl_str_mv	2016-07-20T18:21:38Z
dc.date.issued.fl_str_mv	2016
dc.type.status.fl_str_mv	info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv	info:eu-repo/semantics/article
format	article
status_str	publishedVersion
dc.identifier.citation.fl_str_mv	NESME, Josephet et al. Back to the Future of Soil Metagenomics. Front Microbiol., v. 7, art. 73, p. 1-5, Feb. 2016
dc.identifier.uri.fl_str_mv	https://www.arca.fiocruz.br/handle/icict/15011
dc.identifier.issn.pt_BR.fl_str_mv	1664-302X
dc.identifier.doi.none.fl_str_mv	10.3389/fmicb.2016.00073
identifier_str_mv	NESME, Josephet et al. Back to the Future of Soil Metagenomics. Front Microbiol., v. 7, art. 73, p. 1-5, Feb. 2016 1664-302X 10.3389/fmicb.2016.00073
url	https://www.arca.fiocruz.br/handle/icict/15011
dc.language.iso.fl_str_mv	eng
language	eng
dc.rights.driver.fl_str_mv	info:eu-repo/semantics/openAccess
eu_rights_str_mv	openAccess
dc.publisher.none.fl_str_mv	Frontiers Research Foundation
publisher.none.fl_str_mv	Frontiers Research Foundation
dc.source.none.fl_str_mv	reponame:Repositório Institucional da FIOCRUZ (ARCA) instname:Fundação Oswaldo Cruz (FIOCRUZ) instacron:FIOCRUZ
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reponame_str	Repositório Institucional da FIOCRUZ (ARCA)
collection	Repositório Institucional da FIOCRUZ (ARCA)
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repository.name.fl_str_mv	Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)
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Back to the Future of Soil Metagenomics

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