Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences

Detalhes bibliográficos
Autor(a) principal: Gräf, Tiago
Data de Publicação: 2020
Outros Autores: Delatorre, Edson, Bello, Gonzalo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/40431
Resumo: CNPq
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spelling Gräf, TiagoDelatorre, EdsonBello, Gonzalo2020-03-20T18:10:38Z2020-03-20T18:10:38Z2020GRÄF, Tiago; DELATORRE, Edson; BELLO, Gonzalo. Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences. Memórias do Instituto Oswaldo Cruz, v. 115, n. e190461, p. 1-5, 2020.0074-0276https://www.arca.fiocruz.br/handle/icict/4043110.1590/0074-027601904611678-8060CNPqFAPERJFundação Oswaldo Cruz. Instituto Gonçalo Moniz. Salvador, BA, Brasil.Universidade Federal do Espírito Santo. Centro de Ciências Exatas, Naturais e da Saúde. Departamento de Biologia. Alegre, ES, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de AIDS e Imunologia Molecular. Rio de Janeiro, RJ, Brasil.Phylogenetic analyses were crucial to elucidate the origin and spread of the pandemic human immunodeficiency virus type 1 (HIV-1) group M virus, both during the pre-epidemic period of cryptic dissemination in human populations as well as during the epidemic phase of spread. The use of phylogenetics and phylodynamics approaches has provided important insights to track the founder events that resulted in the spread of HIV-1 strains across vast geographic areas, specific countries and within geographically restricted communities. In the recent years, the use of phylogenetic analysis combined with the huge availability of HIV sequences has become an increasingly important approach to reconstruct HIV transmission networks and understand transmission dynamics in concentrated and generalised epidemics. Significant efforts to obtain viral sequences from newly HIV-infected individuals could certainly contribute to detect rapidly expanding HIV-1 lineages, identify key populations at high-risk and understand what public health interventions should be prioritised in different scenarios.engInstituto Oswaldo Cruz, Ministério da SaúdeHIV-1FilogenéticaFilogeografiaClusters de transmissãoHIV-1PhylogeneticsPhylogeographyTransmission clustersPhylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferencesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; 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dc.title.en_US.fl_str_mv Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
title Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
spellingShingle Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
Gräf, Tiago
HIV-1
Filogenética
Filogeografia
Clusters de transmissão
HIV-1
Phylogenetics
Phylogeography
Transmission clusters
title_short Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
title_full Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
title_fullStr Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
title_full_unstemmed Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
title_sort Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences
author Gräf, Tiago
author_facet Gräf, Tiago
Delatorre, Edson
Bello, Gonzalo
author_role author
author2 Delatorre, Edson
Bello, Gonzalo
author2_role author
author
dc.contributor.author.fl_str_mv Gräf, Tiago
Delatorre, Edson
Bello, Gonzalo
dc.subject.other.pt_BR.fl_str_mv HIV-1
Filogenética
Filogeografia
Clusters de transmissão
topic HIV-1
Filogenética
Filogeografia
Clusters de transmissão
HIV-1
Phylogenetics
Phylogeography
Transmission clusters
dc.subject.en.en_US.fl_str_mv HIV-1
Phylogenetics
Phylogeography
Transmission clusters
description CNPq
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-03-20T18:10:38Z
dc.date.available.fl_str_mv 2020-03-20T18:10:38Z
dc.date.issued.fl_str_mv 2020
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv GRÄF, Tiago; DELATORRE, Edson; BELLO, Gonzalo. Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences. Memórias do Instituto Oswaldo Cruz, v. 115, n. e190461, p. 1-5, 2020.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/40431
dc.identifier.issn.pt_BR.fl_str_mv 0074-0276
dc.identifier.doi.pt_BR.fl_str_mv 10.1590/0074-02760190461
dc.identifier.eissn.pt_BR.fl_str_mv 1678-8060
identifier_str_mv GRÄF, Tiago; DELATORRE, Edson; BELLO, Gonzalo. Phylogenetics applied to the human immunodeficiency virus type 1 (HIV-1): from the cross-species transmissions to the contact network inferences. Memórias do Instituto Oswaldo Cruz, v. 115, n. e190461, p. 1-5, 2020.
0074-0276
10.1590/0074-02760190461
1678-8060
url https://www.arca.fiocruz.br/handle/icict/40431
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Instituto Oswaldo Cruz, Ministério da Saúde
publisher.none.fl_str_mv Instituto Oswaldo Cruz, Ministério da Saúde
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
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instacron_str FIOCRUZ
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