Phytogeographical origin of Madeiran common beans based on phaseolin patterns

Detalhes bibliográficos
Autor(a) principal: Silva, Emanuel Marques da
Data de Publicação: 2011
Outros Autores: Correia, Anísia Soraia Abreu, Lopes, Nuno Alexandre Amaral, Nóbrega, Humberto Gil Moreira, Ganança, José Filipe Teixeira, Domingues, Ana Maria, Khadem, Mahnaz, Slaski, Jan Jacek, Carvalho, Miguel Ângelo Almeida Pinheiro de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Pesquisa Agropecuária Brasileira (Online)
Texto Completo: https://seer.sct.embrapa.br/index.php/pab/article/view/8273
Resumo: The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.
id EMBRAPA-4_95182ebe27c03008a615560d55b82715
oai_identifier_str oai:ojs.seer.sct.embrapa.br:article/8273
network_acronym_str EMBRAPA-4
network_name_str Pesquisa Agropecuária Brasileira (Online)
repository_id_str
spelling Phytogeographical origin of Madeiran common beans based on phaseolin patternsOrigem fitogeográfica de feijões da Madeira com base em perfis de faseolinaPhaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technologyPhaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chipThe objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.O objetivo deste trabalho foi determinar a origem geográfica do "pool" genético do feijoeiro-comum (Phaseolus vulgaris) da ilha da Madeira, Portugal. Os perfis de faseolinas de 50 acessos que representam a diversidade do feijoeiro-comum coletados na ilha da Madeira, conservados no banco de germoplasma ISOPlexis, foram analisados por meio do sistema de eletroforese automática Experion, baseado na tecnologia "lab-on-a-chip". Cinco variedades padrão de feijoeiro, com perfis típicos de faseolina, foram usadas para determinar a origem fitogeográfica dos acessos de feijoeiro-comum da ilha da Madeira. Noventa e dois por cento dos acessos exibiram um perfil consistente com o dos tipos pertencentes ao "pool" genético Andino, enquanto não foi possível determinar a origem de 8% dos acessos restantes. A aplicação de um coeficiente de similaridade de 85%, com base em correlações de Pearson, aumentou o número de acessos com perfil incerto. A abordagem analítica utilizada permitiu determinar a origem andina do "pool" genético em 98% dos casos, e o agrupamento da variabilidade observada entre os feijões da Madeira. Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraPortuguese Foundation for the Science and TechnologyCentre of Macaronesian Studies (CEM)INTERREG IIIB program of FEDER (European Union)Silva, Emanuel Marques daCorreia, Anísia Soraia AbreuLopes, Nuno Alexandre AmaralNóbrega, Humberto Gil MoreiraGanança, José Filipe TeixeiraDomingues, Ana MariaKhadem, MahnazSlaski, Jan JacekCarvalho, Miguel Ângelo Almeida Pinheiro de2011-01-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/8273Pesquisa Agropecuaria Brasileira; v.45, n.8, ago. 2010; 863-871Pesquisa Agropecuária Brasileira; v.45, n.8, ago. 2010; 863-8711678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAenghttps://seer.sct.embrapa.br/index.php/pab/article/view/8273/6083https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/8273/3941info:eu-repo/semantics/openAccess2014-11-10T16:07:48Zoai:ojs.seer.sct.embrapa.br:article/8273Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2014-11-10T16:07:48Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Phytogeographical origin of Madeiran common beans based on phaseolin patterns
Origem fitogeográfica de feijões da Madeira com base em perfis de faseolina
title Phytogeographical origin of Madeiran common beans based on phaseolin patterns
spellingShingle Phytogeographical origin of Madeiran common beans based on phaseolin patterns
Silva, Emanuel Marques da
Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology
Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip
title_short Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_full Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_fullStr Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_full_unstemmed Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_sort Phytogeographical origin of Madeiran common beans based on phaseolin patterns
author Silva, Emanuel Marques da
author_facet Silva, Emanuel Marques da
Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Mahnaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
author_role author
author2 Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Mahnaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv
Portuguese Foundation for the Science and Technology
Centre of Macaronesian Studies (CEM)
INTERREG IIIB program of FEDER (European Union)
dc.contributor.author.fl_str_mv Silva, Emanuel Marques da
Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Mahnaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
dc.subject.por.fl_str_mv Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology
Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip
topic Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology
Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip
description The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.
publishDate 2011
dc.date.none.fl_str_mv 2011-01-27
dc.type.none.fl_str_mv
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/8273
url https://seer.sct.embrapa.br/index.php/pab/article/view/8273
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/8273/6083
https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/8273/3941
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
dc.source.none.fl_str_mv Pesquisa Agropecuaria Brasileira; v.45, n.8, ago. 2010; 863-871
Pesquisa Agropecuária Brasileira; v.45, n.8, ago. 2010; 863-871
1678-3921
0100-104x
reponame:Pesquisa Agropecuária Brasileira (Online)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Pesquisa Agropecuária Brasileira (Online)
collection Pesquisa Agropecuária Brasileira (Online)
repository.name.fl_str_mv Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv pab@sct.embrapa.br || sct.pab@embrapa.br
_version_ 1793416691015745536