Phytogeographical origin of Madeiran common beans based on phaseolin patterns
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Pesquisa Agropecuária Brasileira (Online) |
Texto Completo: | https://seer.sct.embrapa.br/index.php/pab/article/view/8273 |
Resumo: | The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans. |
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Phytogeographical origin of Madeiran common beans based on phaseolin patternsOrigem fitogeográfica de feijões da Madeira com base em perfis de faseolinaPhaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technologyPhaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chipThe objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.O objetivo deste trabalho foi determinar a origem geográfica do "pool" genético do feijoeiro-comum (Phaseolus vulgaris) da ilha da Madeira, Portugal. Os perfis de faseolinas de 50 acessos que representam a diversidade do feijoeiro-comum coletados na ilha da Madeira, conservados no banco de germoplasma ISOPlexis, foram analisados por meio do sistema de eletroforese automática Experion, baseado na tecnologia "lab-on-a-chip". Cinco variedades padrão de feijoeiro, com perfis típicos de faseolina, foram usadas para determinar a origem fitogeográfica dos acessos de feijoeiro-comum da ilha da Madeira. Noventa e dois por cento dos acessos exibiram um perfil consistente com o dos tipos pertencentes ao "pool" genético Andino, enquanto não foi possível determinar a origem de 8% dos acessos restantes. A aplicação de um coeficiente de similaridade de 85%, com base em correlações de Pearson, aumentou o número de acessos com perfil incerto. A abordagem analítica utilizada permitiu determinar a origem andina do "pool" genético em 98% dos casos, e o agrupamento da variabilidade observada entre os feijões da Madeira. Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraPortuguese Foundation for the Science and TechnologyCentre of Macaronesian Studies (CEM)INTERREG IIIB program of FEDER (European Union)Silva, Emanuel Marques daCorreia, Anísia Soraia AbreuLopes, Nuno Alexandre AmaralNóbrega, Humberto Gil MoreiraGanança, José Filipe TeixeiraDomingues, Ana MariaKhadem, MahnazSlaski, Jan JacekCarvalho, Miguel Ângelo Almeida Pinheiro de2011-01-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/8273Pesquisa Agropecuaria Brasileira; v.45, n.8, ago. 2010; 863-871Pesquisa Agropecuária Brasileira; v.45, n.8, ago. 2010; 863-8711678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAenghttps://seer.sct.embrapa.br/index.php/pab/article/view/8273/6083https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/8273/3941info:eu-repo/semantics/openAccess2014-11-10T16:07:48Zoai:ojs.seer.sct.embrapa.br:article/8273Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2014-11-10T16:07:48Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns Origem fitogeográfica de feijões da Madeira com base em perfis de faseolina |
title |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
spellingShingle |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns Silva, Emanuel Marques da Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip |
title_short |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_full |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_fullStr |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_full_unstemmed |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_sort |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
author |
Silva, Emanuel Marques da |
author_facet |
Silva, Emanuel Marques da Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Mahnaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
author_role |
author |
author2 |
Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Mahnaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
Portuguese Foundation for the Science and Technology Centre of Macaronesian Studies (CEM) INTERREG IIIB program of FEDER (European Union) |
dc.contributor.author.fl_str_mv |
Silva, Emanuel Marques da Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Mahnaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
dc.subject.por.fl_str_mv |
Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip |
topic |
Phaseolus vulgaris; gene pool; genetic variability; germplasm; lab-on-a-chip technology Phaseolus vulgaris; pool genético; variabilidade genética; germoplasma; tecnologia lab-on-a-chip |
description |
The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-01-27 |
dc.type.none.fl_str_mv |
|
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/8273 |
url |
https://seer.sct.embrapa.br/index.php/pab/article/view/8273 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://seer.sct.embrapa.br/index.php/pab/article/view/8273/6083 https://seer.sct.embrapa.br/index.php/pab/article/downloadSuppFile/8273/3941 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
publisher.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira Pesquisa Agropecuária Brasileira |
dc.source.none.fl_str_mv |
Pesquisa Agropecuaria Brasileira; v.45, n.8, ago. 2010; 863-871 Pesquisa Agropecuária Brasileira; v.45, n.8, ago. 2010; 863-871 1678-3921 0100-104x reponame:Pesquisa Agropecuária Brasileira (Online) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Pesquisa Agropecuária Brasileira (Online) |
collection |
Pesquisa Agropecuária Brasileira (Online) |
repository.name.fl_str_mv |
Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
pab@sct.embrapa.br || sct.pab@embrapa.br |
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1793416691015745536 |